RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 PIK3C2AO00443 1686 aa14.58□□□□□ -0.08
USP11-209ENST00000488848 INSRP06213 1382 aa14.58□□□□□ -0.08
USP11-209ENST00000488848 SMG6Q86US8 1419 aaKnown RBP14.58□□□□□ -0.08
USP11-209ENST00000488848 NLRP13Q86W25 1043 aa14.57□□□□□ -0.08
USP11-209ENST00000488848 PHF8Q9UPP1 1060 aa14.57□□□□□ -0.08
USP11-209ENST00000488848 MARF1Q9Y4F3 1742 aaKnown RBP14.57□□□□□ -0.08
USP11-209ENST00000488848 FYB1O15117 783 aa14.56□□□□□ -0.08
USP11-209ENST00000488848 ATF3P18847 181 aa14.56□□□□□ -0.08
USP11-209ENST00000488848 AATKQ6ZMQ8 1374 aa14.56□□□□□ -0.08
USP11-209ENST00000488848 NHSL1Q5SYE7 1610 aa14.55□□□□□ -0.08
USP11-209ENST00000488848 TTC21BQ7Z4L5 1316 aa14.55□□□□□ -0.08
USP11-209ENST00000488848 ALS2Q96Q42 1657 aa14.55□□□□□ -0.08
USP11-209ENST00000488848 C14orf37Q86TY3 774 aa14.54□□□□□ -0.08
USP11-209ENST00000488848 PXDNQ92626 1479 aa14.54□□□□□ -0.08
USP11-209ENST00000488848 MED1Q15648 1581 aaPredicted RBP14.53□□□□□ -0.08
USP11-209ENST00000488848 RBM33Q96EV2 1170 aaKnown RBP14.53□□□□□ -0.08
USP11-209ENST00000488848 PHRF1Q9P1Y6 1649 aaKnown RBP14.52□□□□□ -0.08
USP11-209ENST00000488848 SBNO1A3KN83 1393 aa14.52□□□□□ -0.08
USP11-209ENST00000488848 PNPLA6Q8IY17 1366 aa14.51□□□□□ -0.09
USP11-209ENST00000488848 PPP2R1AP30153 589 aa14.51□□□□□ -0.09
USP11-209ENST00000488848 CC2D1BQ5T0F9 858 aaKnown RBP14.51□□□□□ -0.09
USP11-209ENST00000488848 AHDC1Q5TGY3 1603 aaPredicted RBP14.51□□□□□ -0.09
USP11-209ENST00000488848 SLIT3O75094 1523 aa14.51□□□□□ -0.09
USP11-209ENST00000488848 NGDNQ8NEJ9 315 aaKnown RBP14.5□□□□□ -0.09
USP11-209ENST00000488848 COL3A1P02461 1466 aaPredicted RBP14.5□□□□□ -0.09
USP11-209ENST00000488848 KIF24Q5T7B8 1368 aa14.49□□□□□ -0.09
USP11-209ENST00000488848 NPHP3Q7Z494 1330 aa14.49□□□□□ -0.09
USP11-209ENST00000488848 ESCO1Q5FWF5 840 aa14.49□□□□□ -0.09
USP11-209ENST00000488848 ORAI2Q96SN7 254 aa14.49□□□□□ -0.09
USP11-209ENST00000488848 PHF23Q9BUL5 403 aaPredicted RBP14.49□□□□□ -0.09
USP11-209ENST00000488848 CDK12Q9NYV4 1490 aaPredicted RBP14.49□□□□□ -0.09
USP11-209ENST00000488848 CRYBG1Q9Y4K1 1723 aa14.49□□□□□ -0.09
USP11-209ENST00000488848 NUTM2FA1L443 756 aa14.48□□□□□ -0.09
USP11-209ENST00000488848 BRINP3Q76B58 766 aa14.48□□□□□ -0.09
USP11-209ENST00000488848 MORC1Q86VD1 984 aa14.48□□□□□ -0.09
USP11-209ENST00000488848 PMFBP1Q8TBY8 1022 aa14.48□□□□□ -0.09
USP11-209ENST00000488848 SLAIN2Q9P270 581 aa14.48□□□□□ -0.09
USP11-209ENST00000488848 USP19O94966 1318 aa14.47□□□□□ -0.09
USP11-209ENST00000488848 NFAT5O94916 1531 aa14.47□□□□□ -0.09
USP11-209ENST00000488848 ABCC6O95255 1503 aa14.47□□□□□ -0.09
USP11-209ENST00000488848 SHPRHQ149N8 1683 aa14.47□□□□□ -0.09
USP11-209ENST00000488848 SOS2Q07890 1332 aaPredicted RBP14.46□□□□□ -0.09
USP11-209ENST00000488848 NME9Q86XW9 330 aa14.46□□□□□ -0.09
USP11-209ENST00000488848 PNISRQ8TF01 805 aaKnown RBP14.46□□□□□ -0.09
USP11-209ENST00000488848 TNS3Q68CZ2 1445 aa14.46□□□□□ -0.09
USP11-209ENST00000488848 COG3Q96JB2 828 aa14.45□□□□□ -0.1
USP11-209ENST00000488848 GGNBP2Q9H3C7 697 aa14.45□□□□□ -0.1
USP11-209ENST00000488848 MAP2P11137 1827 aaKnown RBP14.45□□□□□ -0.1
USP11-209ENST00000488848 ROBO1Q9Y6N7 1651 aa14.45□□□□□ -0.1
USP11-209ENST00000488848 CCDC184Q52MB2 194 aa14.44□□□□□ -0.1
USP11-209ENST00000488848 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.44□□□□□ -0.1
USP11-209ENST00000488848 MRS2Q9HD23 443 aa14.44□□□□□ -0.1
USP11-209ENST00000488848 ARHGEF10O15013 1369 aa14.44□□□□□ -0.1
USP11-209ENST00000488848 PSME1Q06323 249 aa14.43□□□□□ -0.1
USP11-209ENST00000488848 RTL1A6NKG5 1358 aa14.43□□□□□ -0.1
USP11-209ENST00000488848 BLMP54132 1417 aaPredicted RBP14.42□□□□□ -0.1
USP11-209ENST00000488848 COL22A1Q8NFW1 1626 aaPredicted RBP14.42□□□□□ -0.1
USP11-209ENST00000488848 FOXO3O43524 673 aa14.42□□□□□ -0.1
USP11-209ENST00000488848 KRT28Q7Z3Y7 464 aa14.41□□□□□ -0.1
USP11-209ENST00000488848 PEAK1Q9H792 1746 aa14.41□□□□□ -0.1
USP11-209ENST00000488848 SPATA31A3Q5VYP0 1347 aa14.41□□□□□ -0.1
USP11-209ENST00000488848 POLKQ9UBT6 870 aa14.4□□□□□ -0.1
USP11-209ENST00000488848 ABCA3Q99758 1704 aa14.4□□□□□ -0.1
USP11-209ENST00000488848 RGPD1P0DJD0 1748 aa14.39□□□□□ -0.11
USP11-209ENST00000488848 COL16A1Q07092 1604 aaPredicted RBP14.39□□□□□ -0.11
USP11-209ENST00000488848 MTHFSP49914 203 aa14.38□□□□□ -0.11
USP11-209ENST00000488848 ABTB2Q8N961 1025 aa14.38□□□□□ -0.11
USP11-209ENST00000488848 KCNH5Q8NCM2 988 aa14.38□□□□□ -0.11
USP11-209ENST00000488848 ZRANB1Q9UGI0 708 aa14.38□□□□□ -0.11
USP11-209ENST00000488848 LTN1O94822 1766 aa14.37□□□□□ -0.11
USP11-209ENST00000488848 CPDO75976 1380 aa14.37□□□□□ -0.11
USP11-209ENST00000488848 FLT4P35916 1363 aa14.37□□□□□ -0.11
USP11-209ENST00000488848 CFAP53Q96M91 514 aa14.37□□□□□ -0.11
USP11-209ENST00000488848 NLRP6P59044 892 aa14.36□□□□□ -0.11
USP11-209ENST00000488848 TOM1O60784 492 aa14.35□□□□□ -0.11
USP11-209ENST00000488848 NCBP3Q53F19 620 aaKnown RBP14.35□□□□□ -0.11
USP11-209ENST00000488848 CAMTA1Q9Y6Y1 1673 aa14.35□□□□□ -0.11
USP11-209ENST00000488848 COL18A1P39060 1754 aa14.34□□□□□ -0.11
USP11-209ENST00000488848 NCAPD2Q15021 1401 aa14.34□□□□□ -0.11
USP11-209ENST00000488848 MAP3K19Q56UN5 1328 aa14.34□□□□□ -0.11
USP11-209ENST00000488848 CERKQ8TCT0 537 aa14.33□□□□□ -0.12
USP11-209ENST00000488848 PLEKHG2Q9H7P9 1386 aa14.33□□□□□ -0.12
USP11-209ENST00000488848 ARHGEF25Q86VW2 580 aa14.32□□□□□ -0.12
USP11-209ENST00000488848 EMILIN1Q9Y6C2 1016 aa14.32□□□□□ -0.12
USP11-209ENST00000488848 LMO7Q8WWI1 1683 aa14.32□□□□□ -0.12
USP11-209ENST00000488848 FAM208AQ9UK61 1670 aaKnown RBP14.32□□□□□ -0.12
USP11-209ENST00000488848 PHLPP1O60346 1717 aa14.32□□□□□ -0.12
USP11-209ENST00000488848 PAK3O75914 559 aaPredicted RBP14.31□□□□□ -0.12
USP11-209ENST00000488848 GCP02774 474 aa14.31□□□□□ -0.12
USP11-209ENST00000488848 NGEFQ8N5V2 710 aa14.31□□□□□ -0.12
USP11-209ENST00000488848 KDRP35968 1356 aa14.31□□□□□ -0.12
USP11-209ENST00000488848 IL13P35225 146 aa14.3□□□□□ -0.12
USP11-209ENST00000488848 TNNT2P45379 298 aaPredicted RBP14.3□□□□□ -0.12
USP11-209ENST00000488848 CNGB1Q14028 1251 aaPredicted RBP14.3□□□□□ -0.12
USP11-209ENST00000488848 DIAPH1O60610 1272 aaKnown RBP14.29□□□□□ -0.12
USP11-209ENST00000488848 XPCQ01831 940 aaPredicted RBP14.29□□□□□ -0.12
USP11-209ENST00000488848 RRS1Q15050 365 aaKnown RBP14.29□□□□□ -0.12
USP11-209ENST00000488848 IP6K1Q92551 441 aa14.29□□□□□ -0.12
USP11-209ENST00000488848 DDX17Q92841 729 aaKnown RBP14.29□□□□□ -0.12
USP11-209ENST00000488848 LRRC59Q96AG4 307 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms