RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 NUTM2FA1L443 756 aa12.61□□□□□ -0.39
SF3B1-211ENST00000487698 SMG6Q86US8 1419 aaKnown RBP12.61□□□□□ -0.39
SF3B1-211ENST00000487698 NME9Q86XW9 330 aa12.61□□□□□ -0.39
SF3B1-211ENST00000487698 HSPA2P54652 639 aa12.6□□□□□ -0.39
SF3B1-211ENST00000487698 OVOS2A0A0J9YW53 1432 aa12.6□□□□□ -0.39
SF3B1-211ENST00000487698 OVOS2Q6IE36 1432 aa12.6□□□□□ -0.39
SF3B1-211ENST00000487698 PIK3C2AO00443 1686 aa12.6□□□□□ -0.39
SF3B1-211ENST00000487698 PNPLA6Q8IY17 1366 aa12.6□□□□□ -0.39
SF3B1-211ENST00000487698 MARF1Q9Y4F3 1742 aaKnown RBP12.59□□□□□ -0.39
SF3B1-211ENST00000487698 TTC21BQ7Z4L5 1316 aa12.59□□□□□ -0.39
SF3B1-211ENST00000487698 AATKQ6ZMQ8 1374 aa12.59□□□□□ -0.39
SF3B1-211ENST00000487698 CFAP53Q96M91 514 aa12.59□□□□□ -0.39
SF3B1-211ENST00000487698 SENP3-EIF4A1A0A087X0R7 540 aa12.58□□□□□ -0.4
SF3B1-211ENST00000487698 XIRP1Q702N8 1843 aaKnown RBP12.58□□□□□ -0.4
SF3B1-211ENST00000487698 CDK12Q9NYV4 1490 aaPredicted RBP12.57□□□□□ -0.4
SF3B1-211ENST00000487698 RBM33Q96EV2 1170 aaKnown RBP12.57□□□□□ -0.4
SF3B1-211ENST00000487698 ZRANB1Q9UGI0 708 aa12.57□□□□□ -0.4
SF3B1-211ENST00000487698 TTC21AQ8NDW8 1320 aa12.57□□□□□ -0.4
SF3B1-211ENST00000487698 IQSEC2Q5JU85 1478 aa12.57□□□□□ -0.4
SF3B1-211ENST00000487698 LRRC7Q96NW7 1537 aa12.57□□□□□ -0.4
SF3B1-211ENST00000487698 PMFBP1Q8TBY8 1022 aa12.56□□□□□ -0.4
SF3B1-211ENST00000487698 NCOA3Q9Y6Q9 1424 aa12.56□□□□□ -0.4
SF3B1-211ENST00000487698 COG3Q96JB2 828 aa12.56□□□□□ -0.4
SF3B1-211ENST00000487698 KIF1AQ12756 1690 aa12.56□□□□□ -0.4
SF3B1-211ENST00000487698 POLKQ9UBT6 870 aa12.55□□□□□ -0.4
SF3B1-211ENST00000487698 USP31Q70CQ4 1352 aa12.55□□□□□ -0.4
SF3B1-211ENST00000487698 DCCP43146 1447 aa12.55□□□□□ -0.4
SF3B1-211ENST00000487698 PDE3BQ13370 1112 aa12.55□□□□□ -0.4
SF3B1-211ENST00000487698 NGDNQ8NEJ9 315 aaKnown RBP12.55□□□□□ -0.4
SF3B1-211ENST00000487698 NUDCQ9Y266 331 aa12.55□□□□□ -0.4
SF3B1-211ENST00000487698 ZNF521Q96K83 1311 aa12.54□□□□□ -0.4
SF3B1-211ENST00000487698 PROSER2Q86WR7 435 aaPredicted RBP12.54□□□□□ -0.4
SF3B1-211ENST00000487698 PEAK1Q9H792 1746 aa12.54□□□□□ -0.4
SF3B1-211ENST00000487698 CCDC146Q8IYE0 955 aa12.53□□□□□ -0.4
SF3B1-211ENST00000487698 TMEM94Q12767 1356 aa12.53□□□□□ -0.4
SF3B1-211ENST00000487698 PHF8Q9UPP1 1060 aa12.53□□□□□ -0.4
SF3B1-211ENST00000487698 FBLN1P23142 703 aa12.52□□□□□ -0.4
SF3B1-211ENST00000487698 TRPM3Q9HCF6 1732 aaPredicted RBP12.52□□□□□ -0.41
SF3B1-211ENST00000487698 C14orf37Q86TY3 774 aa12.52□□□□□ -0.41
SF3B1-211ENST00000487698 NGEFQ8N5V2 710 aa12.52□□□□□ -0.41
SF3B1-211ENST00000487698 C19orf44Q9H6X5 657 aa12.52□□□□□ -0.41
SF3B1-211ENST00000487698 SALL2Q9Y467 1007 aaPredicted RBP12.52□□□□□ -0.41
SF3B1-211ENST00000487698 EMILIN1Q9Y6C2 1016 aa12.52□□□□□ -0.41
SF3B1-211ENST00000487698 C1orf167Q5SNV9 1468 aa12.51□□□□□ -0.41
SF3B1-211ENST00000487698 APAF1O14727 1248 aa12.5□□□□□ -0.41
SF3B1-211ENST00000487698 DIAPH1O60610 1272 aaKnown RBP12.5□□□□□ -0.41
SF3B1-211ENST00000487698 RUNDC1Q96C34 613 aa12.5□□□□□ -0.41
SF3B1-211ENST00000487698 MST1RQ04912 1400 aa12.5□□□□□ -0.41
SF3B1-211ENST00000487698 RGPD1P0DJD0 1748 aa12.5□□□□□ -0.41
SF3B1-211ENST00000487698 U2AF1L5P0DN76 240 aaPredicted RBP12.49□□□□□ -0.41
SF3B1-211ENST00000487698 U2AF1Q01081 240 aaKnown RBP eCLIP12.49□□□□□ -0.414e-8■□□□□ 11
SF3B1-211ENST00000487698 SUPT16HQ9Y5B9 1047 aaKnown RBP12.49□□□□□ -0.41
SF3B1-211ENST00000487698 RRS1Q15050 365 aaKnown RBP12.49□□□□□ -0.41
SF3B1-211ENST00000487698 ESCO1Q5FWF5 840 aa12.49□□□□□ -0.41
SF3B1-211ENST00000487698 CDCA7LQ96GN5 454 aa12.49□□□□□ -0.41
SF3B1-211ENST00000487698 NCBP3Q53F19 620 aaKnown RBP12.47□□□□□ -0.41
SF3B1-211ENST00000487698 PLEKHF1Q96S99 279 aa12.47□□□□□ -0.41
SF3B1-211ENST00000487698 PHF23Q9BUL5 403 aaPredicted RBP12.47□□□□□ -0.41
SF3B1-211ENST00000487698 LTN1O94822 1766 aa12.47□□□□□ -0.41
SF3B1-211ENST00000487698 ALS2Q96Q42 1657 aa12.47□□□□□ -0.41
SF3B1-211ENST00000487698 PPM1GO15355 546 aaPredicted RBP12.47□□□□□ -0.41
SF3B1-211ENST00000487698 IL13P35225 146 aa12.47□□□□□ -0.41
SF3B1-211ENST00000487698 ORAI2Q96SN7 254 aa12.47□□□□□ -0.41
SF3B1-211ENST00000487698 RNF123Q5XPI4 1314 aa12.47□□□□□ -0.41
SF3B1-211ENST00000487698 U2SURPO15042 1029 aaKnown RBP12.46□□□□□ -0.41
SF3B1-211ENST00000487698 TCP11L2Q8N4U5 519 aa12.46□□□□□ -0.41
SF3B1-211ENST00000487698 PHRF1Q9P1Y6 1649 aaKnown RBP12.46□□□□□ -0.41
SF3B1-211ENST00000487698 NFAT5O94916 1531 aa12.46□□□□□ -0.41
SF3B1-211ENST00000487698 NEFLP07196 543 aa12.46□□□□□ -0.42
SF3B1-211ENST00000487698 GOLGA2Q08379 1002 aa12.45□□□□□ -0.42
SF3B1-211ENST00000487698 FKBP8Q14318 412 aa12.45□□□□□ -0.42
SF3B1-211ENST00000487698 SBNO1A3KN83 1393 aa12.45□□□□□ -0.42
SF3B1-211ENST00000487698 MSH6P52701 1360 aa12.45□□□□□ -0.42
SF3B1-211ENST00000487698 KIF24Q5T7B8 1368 aa12.45□□□□□ -0.42
SF3B1-211ENST00000487698 SLIT3O75094 1523 aa12.45□□□□□ -0.42
SF3B1-211ENST00000487698 ATF3P18847 181 aa12.44□□□□□ -0.42
SF3B1-211ENST00000487698 NLRP6P59044 892 aa12.44□□□□□ -0.42
SF3B1-211ENST00000487698 CCDC27Q2M243 656 aa12.44□□□□□ -0.42
SF3B1-211ENST00000487698 TRMT2AQ8IZ69 625 aaKnown RBP12.44□□□□□ -0.42
SF3B1-211ENST00000487698 MAP3K19Q56UN5 1328 aa12.44□□□□□ -0.42
SF3B1-211ENST00000487698 ZNF335Q9H4Z2 1342 aaPredicted RBP12.44□□□□□ -0.42
SF3B1-211ENST00000487698 FLT4P35916 1363 aa12.44□□□□□ -0.42
SF3B1-211ENST00000487698 FCHSD2O94868 740 aa12.44□□□□□ -0.42
SF3B1-211ENST00000487698 DUSP27Q5VZP5 1158 aa12.44□□□□□ -0.42
SF3B1-211ENST00000487698 WWC1Q8IX03 1113 aa12.44□□□□□ -0.42
SF3B1-211ENST00000487698 ABTB2Q8N961 1025 aa12.44□□□□□ -0.42
SF3B1-211ENST00000487698 RSPH6AQ9H0K4 717 aa12.44□□□□□ -0.42
SF3B1-211ENST00000487698 PSME1Q06323 249 aa12.43□□□□□ -0.42
SF3B1-211ENST00000487698 SLFN5Q08AF3 891 aa12.43□□□□□ -0.42
SF3B1-211ENST00000487698 CADPS2Q86UW7 1296 aa12.43□□□□□ -0.42
SF3B1-211ENST00000487698 DLG5Q8TDM6 1919 aa12.43□□□□□ -0.42
SF3B1-211ENST00000487698 PAK3O75914 559 aaPredicted RBP12.43□□□□□ -0.42
SF3B1-211ENST00000487698 DMRT2Q9Y5R5 561 aa12.43□□□□□ -0.42
SF3B1-211ENST00000487698 FOXO3O43524 673 aa12.42□□□□□ -0.42
SF3B1-211ENST00000487698 PNNQ9H307 717 aaKnown RBP12.42□□□□□ -0.42
SF3B1-211ENST00000487698 RRP7AQ9Y3A4 280 aaKnown RBP12.42□□□□□ -0.42
SF3B1-211ENST00000487698 EIF4A2Q14240 407 aaKnown RBP12.41□□□□□ -0.42
SF3B1-211ENST00000487698 SPINK5Q9NQ38 1064 aaPredicted RBP12.41□□□□□ -0.42
SF3B1-211ENST00000487698 RTL1A6NKG5 1358 aa12.41□□□□□ -0.42
SF3B1-211ENST00000487698 NUTM2GQ5VZR2 741 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms