RNA–Protein interactions for RNA: ENST00000486806.1

MCF2L-227, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 361 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-227ENST00000486806 SOS2Q07890 1332 aaPredicted RBP13.14□□□□□ -0.31
MCF2L-227ENST00000486806 TTC21BQ7Z4L5 1316 aa13.14□□□□□ -0.31
MCF2L-227ENST00000486806 TTC21AQ8NDW8 1320 aa13.14□□□□□ -0.31
MCF2L-227ENST00000486806 DDX17Q92841 729 aaKnown RBP13.14□□□□□ -0.31
MCF2L-227ENST00000486806 KNSTRNQ9Y448 316 aa13.14□□□□□ -0.31
MCF2L-227ENST00000486806 USP54Q70EL1 1684 aa13.14□□□□□ -0.31
MCF2L-227ENST00000486806 CGNL1Q0VF96 1302 aa13.13□□□□□ -0.31
MCF2L-227ENST00000486806 OVOS2A0A0J9YW53 1432 aa13.13□□□□□ -0.31
MCF2L-227ENST00000486806 TNS3Q68CZ2 1445 aa13.13□□□□□ -0.31
MCF2L-227ENST00000486806 OVOS2Q6IE36 1432 aa13.13□□□□□ -0.31
MCF2L-227ENST00000486806 ALS2Q96Q42 1657 aa13.12□□□□□ -0.31
MCF2L-227ENST00000486806 USP31Q70CQ4 1352 aa13.12□□□□□ -0.31
MCF2L-227ENST00000486806 KIF20BQ96Q89 1820 aa13.12□□□□□ -0.31
MCF2L-227ENST00000486806 PSME1Q06323 249 aa13.12□□□□□ -0.31
MCF2L-227ENST00000486806 KRT28Q7Z3Y7 464 aa13.12□□□□□ -0.31
MCF2L-227ENST00000486806 PARD3Q8TEW0 1356 aa13.11□□□□□ -0.31
MCF2L-227ENST00000486806 COL16A1Q07092 1604 aaPredicted RBP13.11□□□□□ -0.31
MCF2L-227ENST00000486806 FYB1O15117 783 aa13.11□□□□□ -0.31
MCF2L-227ENST00000486806 XPCQ01831 940 aaPredicted RBP13.11□□□□□ -0.31
MCF2L-227ENST00000486806 DIEXFQ68CQ4 756 aaKnown RBP13.11□□□□□ -0.31
MCF2L-227ENST00000486806 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.11□□□□□ -0.31
MCF2L-227ENST00000486806 MED1Q15648 1581 aaPredicted RBP13.11□□□□□ -0.31
MCF2L-227ENST00000486806 PIP4K2BP78356 416 aa13.1□□□□□ -0.31
MCF2L-227ENST00000486806 NME9Q86XW9 330 aa13.1□□□□□ -0.31
MCF2L-227ENST00000486806 ANKRD26Q9UPS8 1709 aa13.1□□□□□ -0.31
MCF2L-227ENST00000486806 MARF1Q9Y4F3 1742 aaKnown RBP13.1□□□□□ -0.31
MCF2L-227ENST00000486806 SPATA31A3Q5VYP0 1347 aa13.1□□□□□ -0.31
MCF2L-227ENST00000486806 SLIT3O75094 1523 aa13.08□□□□□ -0.31
MCF2L-227ENST00000486806 ARHGEF10O15013 1369 aa13.08□□□□□ -0.31
MCF2L-227ENST00000486806 GGNBP2Q9H3C7 697 aa13.08□□□□□ -0.32
MCF2L-227ENST00000486806 USP19O94966 1318 aa13.08□□□□□ -0.32
MCF2L-227ENST00000486806 PHLPP1O60346 1717 aa13.08□□□□□ -0.32
MCF2L-227ENST00000486806 PAK3O75914 559 aaPredicted RBP13.07□□□□□ -0.32
MCF2L-227ENST00000486806 CC2D1BQ5T0F9 858 aaKnown RBP13.07□□□□□ -0.32
MCF2L-227ENST00000486806 PRKRIP1Q9H875 184 aaPredicted RBP13.07□□□□□ -0.32
MCF2L-227ENST00000486806 ZRANB1Q9UGI0 708 aa13.07□□□□□ -0.32
MCF2L-227ENST00000486806 CRYBG1Q9Y4K1 1723 aa13.06□□□□□ -0.32
MCF2L-227ENST00000486806 ABTB2Q8N961 1025 aa13.06□□□□□ -0.32
MCF2L-227ENST00000486806 SCAF1Q9H7N4 1312 aaKnown RBP13.06□□□□□ -0.32
MCF2L-227ENST00000486806 COL22A1Q8NFW1 1626 aaPredicted RBP13.06□□□□□ -0.32
MCF2L-227ENST00000486806 NFAT5O94916 1531 aa13.05□□□□□ -0.32
MCF2L-227ENST00000486806 COG3Q96JB2 828 aa13.05□□□□□ -0.32
MCF2L-227ENST00000486806 PNPLA6Q8IY17 1366 aa13.05□□□□□ -0.32
MCF2L-227ENST00000486806 PHRF1Q9P1Y6 1649 aaKnown RBP13.04□□□□□ -0.32
MCF2L-227ENST00000486806 ANP32CO43423 234 aa13.04□□□□□ -0.32
MCF2L-227ENST00000486806 NLRP6P59044 892 aa13.04□□□□□ -0.32
MCF2L-227ENST00000486806 RALBP1Q15311 655 aa13.04□□□□□ -0.32
MCF2L-227ENST00000486806 AATKQ6ZMQ8 1374 aa13.04□□□□□ -0.32
MCF2L-227ENST00000486806 SMG6Q86US8 1419 aaKnown RBP13.04□□□□□ -0.32
MCF2L-227ENST00000486806 ABCA3Q99758 1704 aa13.03□□□□□ -0.32
MCF2L-227ENST00000486806 MORC1Q86VD1 984 aa13.03□□□□□ -0.32
MCF2L-227ENST00000486806 LRRC59Q96AG4 307 aaKnown RBP13.03□□□□□ -0.32
MCF2L-227ENST00000486806 NUTM2GQ5VZR2 741 aa13.02□□□□□ -0.33
MCF2L-227ENST00000486806 NLRP13Q86W25 1043 aa13.02□□□□□ -0.33
MCF2L-227ENST00000486806 SHPRHQ149N8 1683 aa13.02□□□□□ -0.33
MCF2L-227ENST00000486806 CNGB1Q14028 1251 aaPredicted RBP13.01□□□□□ -0.33
MCF2L-227ENST00000486806 MYBBP1AQ9BQG0 1328 aaKnown RBP13.01□□□□□ -0.33
MCF2L-227ENST00000486806 PPP2R1AP30153 589 aa13□□□□□ -0.33
MCF2L-227ENST00000486806 LMOD2Q6P5Q4 547 aa13□□□□□ -0.33
MCF2L-227ENST00000486806 JCADQ9P266 1359 aa12.99□□□□□ -0.33
MCF2L-227ENST00000486806 HSPA1LP34931 641 aa12.99□□□□□ -0.33
MCF2L-227ENST00000486806 KCNH5Q8NCM2 988 aa12.99□□□□□ -0.33
MCF2L-227ENST00000486806 GCP02774 474 aa12.98□□□□□ -0.33
MCF2L-227ENST00000486806 TNNT2P45379 298 aaPredicted RBP12.98□□□□□ -0.33
MCF2L-227ENST00000486806 ABCC6O95255 1503 aa12.98□□□□□ -0.33
MCF2L-227ENST00000486806 CDK12Q9NYV4 1490 aaPredicted RBP12.97□□□□□ -0.33
MCF2L-227ENST00000486806 RTL1A6NKG5 1358 aa12.97□□□□□ -0.33
MCF2L-227ENST00000486806 CPDO75976 1380 aa12.97□□□□□ -0.33
MCF2L-227ENST00000486806 KIF24Q5T7B8 1368 aa12.97□□□□□ -0.33
MCF2L-227ENST00000486806 PEAK1Q9H792 1746 aa12.97□□□□□ -0.33
MCF2L-227ENST00000486806 FBLN1P23142 703 aa12.97□□□□□ -0.33
MCF2L-227ENST00000486806 MIER1Q8N108 512 aa12.97□□□□□ -0.33
MCF2L-227ENST00000486806 CABLES1Q8TDN4 633 aa12.97□□□□□ -0.33
MCF2L-227ENST00000486806 FBXO41Q8TF61 875 aa12.97□□□□□ -0.33
MCF2L-227ENST00000486806 POLKQ9UBT6 870 aa12.97□□□□□ -0.33
MCF2L-227ENST00000486806 COL3A1P02461 1466 aaPredicted RBP12.97□□□□□ -0.33
MCF2L-227ENST00000486806 MAP3K19Q56UN5 1328 aa12.96□□□□□ -0.33
MCF2L-227ENST00000486806 RRS1Q15050 365 aaKnown RBP12.96□□□□□ -0.33
MCF2L-227ENST00000486806 EMILIN1Q9Y6C2 1016 aa12.96□□□□□ -0.33
MCF2L-227ENST00000486806 INSRP06213 1382 aa12.95□□□□□ -0.34
MCF2L-227ENST00000486806 SOX12O15370 315 aa12.95□□□□□ -0.34
MCF2L-227ENST00000486806 ARHGEF25Q86VW2 580 aa12.95□□□□□ -0.34
MCF2L-227ENST00000486806 FLT4P35916 1363 aa12.94□□□□□ -0.34
MCF2L-227ENST00000486806 MTHFSP49914 203 aa12.94□□□□□ -0.34
MCF2L-227ENST00000486806 KIAA0232Q92628 1395 aa12.94□□□□□ -0.34
MCF2L-227ENST00000486806 SPATA31A6Q5VVP1 1343 aa12.93□□□□□ -0.34
MCF2L-227ENST00000486806 LMO7Q8WWI1 1683 aa12.93□□□□□ -0.34
MCF2L-227ENST00000486806 LRP6O75581 1613 aa12.93□□□□□ -0.34
MCF2L-227ENST00000486806 CCER2I3L3R5 266 aa12.93□□□□□ -0.34
MCF2L-227ENST00000486806 LTN1O94822 1766 aa12.93□□□□□ -0.34
MCF2L-227ENST00000486806 PLEKHG5O94827 1062 aa12.92□□□□□ -0.34
MCF2L-227ENST00000486806 BLMP54132 1417 aaPredicted RBP12.92□□□□□ -0.34
MCF2L-227ENST00000486806 CCDC184Q52MB2 194 aa12.92□□□□□ -0.34
MCF2L-227ENST00000486806 COL18A1P39060 1754 aa12.92□□□□□ -0.34
MCF2L-227ENST00000486806 HOXC9P31274 260 aa12.91□□□□□ -0.34
MCF2L-227ENST00000486806 ZC3H6P61129 1189 aaKnown RBP12.91□□□□□ -0.34
MCF2L-227ENST00000486806 IP6K1Q92551 441 aa12.9□□□□□ -0.34
MCF2L-227ENST00000486806 MAP2P11137 1827 aaKnown RBP12.9□□□□□ -0.34
MCF2L-227ENST00000486806 COL14A1Q05707 1796 aaKnown RBP12.89□□□□□ -0.35
MCF2L-227ENST00000486806 HAP1P54257 671 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms