RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 PUS7Q96PZ0 661 aaKnown RBP17.77■□□□□ 0.44
HDAC6-229ENST00000486665 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.76■□□□□ 0.43
HDAC6-229ENST00000486665 KIF1AQ12756 1690 aa17.76■□□□□ 0.43
HDAC6-229ENST00000486665 GLI3P10071 1580 aa17.75■□□□□ 0.43
HDAC6-229ENST00000486665 SPATA31A3Q5VYP0 1347 aa17.73■□□□□ 0.43
HDAC6-229ENST00000486665 USP32Q8NFA0 1604 aa17.73■□□□□ 0.43
HDAC6-229ENST00000486665 SLIT2O94813 1529 aa17.72■□□□□ 0.43
HDAC6-229ENST00000486665 BRWD3Q6RI45 1802 aa17.72■□□□□ 0.43
HDAC6-229ENST00000486665 TMC1Q8TDI8 760 aa17.72■□□□□ 0.43
HDAC6-229ENST00000486665 SLC12A5Q9H2X9 1139 aa17.72■□□□□ 0.43
HDAC6-229ENST00000486665 CABP1Q9NZU7 370 aa17.72■□□□□ 0.43
HDAC6-229ENST00000486665 CCDC61Q9Y6R9 512 aa17.72■□□□□ 0.43
HDAC6-229ENST00000486665 ABCA3Q99758 1704 aa17.72■□□□□ 0.43
HDAC6-229ENST00000486665 GJD4Q96KN9 370 aaPredicted RBP17.71■□□□□ 0.43
HDAC6-229ENST00000486665 ATP7BP35670 1465 aa17.7■□□□□ 0.42
HDAC6-229ENST00000486665 KRT28Q7Z3Y7 464 aa17.7■□□□□ 0.42
HDAC6-229ENST00000486665 PLCH1Q4KWH8 1693 aa17.7■□□□□ 0.42
HDAC6-229ENST00000486665 CABLES1Q8TDN4 633 aa17.69■□□□□ 0.42
HDAC6-229ENST00000486665 ANKARQ7Z5J8 1434 aa17.69■□□□□ 0.42
HDAC6-229ENST00000486665 PLEKHG3A1L390 1219 aa17.68■□□□□ 0.42
HDAC6-229ENST00000486665 PLEKHG5O94827 1062 aa17.68■□□□□ 0.42
HDAC6-229ENST00000486665 DDX10Q13206 875 aaKnown RBP17.68■□□□□ 0.42
HDAC6-229ENST00000486665 TNS3Q68CZ2 1445 aa17.68■□□□□ 0.42
HDAC6-229ENST00000486665 UNC5CLQ8IV45 518 aa17.68■□□□□ 0.42
HDAC6-229ENST00000486665 PMFBP1Q8TBY8 1022 aa17.68■□□□□ 0.42
HDAC6-229ENST00000486665 PPIP5K1Q6PFW1 1433 aa17.67■□□□□ 0.42
HDAC6-229ENST00000486665 PHF8Q9UPP1 1060 aa17.67■□□□□ 0.42
HDAC6-229ENST00000486665 PANK3Q9H999 370 aa17.66■□□□□ 0.42
HDAC6-229ENST00000486665 TRPM3Q9HCF6 1732 aaPredicted RBP17.64■□□□□ 0.41
HDAC6-229ENST00000486665 ACEP12821 1306 aa17.64■□□□□ 0.41
HDAC6-229ENST00000486665 NWD2Q9ULI1 1742 aa17.64■□□□□ 0.41
HDAC6-229ENST00000486665 CARD14Q9BXL6 1004 aa17.63■□□□□ 0.41
HDAC6-229ENST00000486665 NINLQ9Y2I6 1382 aa17.63■□□□□ 0.41
HDAC6-229ENST00000486665 CD163L1Q9NR16 1453 aa17.63■□□□□ 0.41
HDAC6-229ENST00000486665 MYOM1P52179 1685 aa17.62■□□□□ 0.41
HDAC6-229ENST00000486665 TOPAZ1Q8N9V7 1692 aa17.62■□□□□ 0.41
HDAC6-229ENST00000486665 NGDNQ8NEJ9 315 aaKnown RBP17.62■□□□□ 0.41
HDAC6-229ENST00000486665 SBNO1A3KN83 1393 aa17.62■□□□□ 0.41
HDAC6-229ENST00000486665 NRAPQ86VF7 1730 aa17.61■□□□□ 0.41
HDAC6-229ENST00000486665 HDGFL2Q7Z4V5 671 aaPredicted RBP17.6■□□□□ 0.41
HDAC6-229ENST00000486665 TERF2IPQ9NYB0 399 aa17.6■□□□□ 0.41
HDAC6-229ENST00000486665 ZRANB1Q9UGI0 708 aa17.6■□□□□ 0.41
HDAC6-229ENST00000486665 A0A1W2PP64 1363 aa17.6■□□□□ 0.41
HDAC6-229ENST00000486665 POLR3AO14802 1390 aaPredicted RBP17.6■□□□□ 0.41
HDAC6-229ENST00000486665 ANKRD36BQ8N2N9 1353 aa17.6■□□□□ 0.41
HDAC6-229ENST00000486665 CPSF1Q10570 1443 aaKnown RBP17.6■□□□□ 0.41
HDAC6-229ENST00000486665 ALS2Q96Q42 1657 aa17.6■□□□□ 0.41
HDAC6-229ENST00000486665 PSME1Q06323 249 aa17.59■□□□□ 0.41
HDAC6-229ENST00000486665 VPS72Q15906 364 aa17.59■□□□□ 0.41
HDAC6-229ENST00000486665 LMOD2Q6P5Q4 547 aa17.59■□□□□ 0.41
HDAC6-229ENST00000486665 DEFB132Q7Z7B7 95 aa17.59■□□□□ 0.41
HDAC6-229ENST00000486665 CCDC125Q86Z20 511 aa17.59■□□□□ 0.41
HDAC6-229ENST00000486665 SEPT12Q8IYM1 358 aa17.59■□□□□ 0.41
HDAC6-229ENST00000486665 BLMP54132 1417 aaPredicted RBP17.58■□□□□ 0.41
HDAC6-229ENST00000486665 FAM83GA6ND36 823 aa17.58■□□□□ 0.4
HDAC6-229ENST00000486665 PER1O15534 1290 aaPredicted RBP17.58■□□□□ 0.4
HDAC6-229ENST00000486665 HAP1P54257 671 aaPredicted RBP17.58■□□□□ 0.4
HDAC6-229ENST00000486665 ZNF692Q9BU19 519 aaPredicted RBP17.58■□□□□ 0.4
HDAC6-229ENST00000486665 ITSN1Q15811 1721 aa17.58■□□□□ 0.4
HDAC6-229ENST00000486665 CRYBG1Q9Y4K1 1723 aa17.58■□□□□ 0.4
HDAC6-229ENST00000486665 ARHGEF10O15013 1369 aa17.56■□□□□ 0.4
HDAC6-229ENST00000486665 KTN1Q86UP2 1357 aaKnown RBP17.56■□□□□ 0.4
HDAC6-229ENST00000486665 ONECUT3O60422 494 aaPredicted RBP17.55■□□□□ 0.4
HDAC6-229ENST00000486665 CCDC9Q9Y3X0 531 aaKnown RBP17.54■□□□□ 0.4
HDAC6-229ENST00000486665 USP6P35125 1406 aa17.54■□□□□ 0.4
HDAC6-229ENST00000486665 SSH2Q76I76 1423 aa17.54■□□□□ 0.4
HDAC6-229ENST00000486665 NSD3Q9BZ95 1437 aa17.54■□□□□ 0.4
HDAC6-229ENST00000486665 TTC21BQ7Z4L5 1316 aa17.53■□□□□ 0.4
HDAC6-229ENST00000486665 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.53■□□□□ 0.4
HDAC6-229ENST00000486665 COL14A1Q05707 1796 aaKnown RBP17.53■□□□□ 0.4
HDAC6-229ENST00000486665 KNSTRNQ9Y448 316 aa17.52■□□□□ 0.4
HDAC6-229ENST00000486665 AKAP12Q02952 1782 aa17.52■□□□□ 0.4
HDAC6-229ENST00000486665 AMER1Q5JTC6 1135 aaPredicted RBP17.51■□□□□ 0.39
HDAC6-229ENST00000486665 KRT27Q7Z3Y8 459 aa17.51■□□□□ 0.39
HDAC6-229ENST00000486665 BTG4Q9NY30 223 aa17.51■□□□□ 0.39
HDAC6-229ENST00000486665 EDC4Q6P2E9 1401 aaKnown RBP17.5■□□□□ 0.39
HDAC6-229ENST00000486665 PAK3O75914 559 aaPredicted RBP17.5■□□□□ 0.39
HDAC6-229ENST00000486665 FAM98CQ17RN3 349 aaKnown RBP17.5■□□□□ 0.39
HDAC6-229ENST00000486665 FYB1O15117 783 aa17.49■□□□□ 0.39
HDAC6-229ENST00000486665 CNGB1Q14028 1251 aaPredicted RBP17.49■□□□□ 0.39
HDAC6-229ENST00000486665 NME9Q86XW9 330 aa17.49■□□□□ 0.39
HDAC6-229ENST00000486665 MON2Q7Z3U7 1717 aa17.49■□□□□ 0.39
HDAC6-229ENST00000486665 FAM182BQ5T319 152 aa17.48■□□□□ 0.39
HDAC6-229ENST00000486665 DIEXFQ68CQ4 756 aaKnown RBP17.47■□□□□ 0.39
HDAC6-229ENST00000486665 BRD4O60885 1362 aaPredicted RBP17.47■□□□□ 0.39
HDAC6-229ENST00000486665 THSD7AQ9UPZ6 1657 aa17.47■□□□□ 0.39
HDAC6-229ENST00000486665 PHRF1Q9P1Y6 1649 aaKnown RBP17.47■□□□□ 0.39
HDAC6-229ENST00000486665 TTC21AQ8NDW8 1320 aa17.47■□□□□ 0.39
HDAC6-229ENST00000486665 CC2D1BQ5T0F9 858 aaKnown RBP17.46■□□□□ 0.39
HDAC6-229ENST00000486665 NUTM2GQ5VZR2 741 aa17.46■□□□□ 0.39
HDAC6-229ENST00000486665 GGNBP2Q9H3C7 697 aa17.46■□□□□ 0.39
HDAC6-229ENST00000486665 CGNL1Q0VF96 1302 aa17.46■□□□□ 0.38
HDAC6-229ENST00000486665 NRKQ7Z2Y5 1582 aa17.45■□□□□ 0.38
HDAC6-229ENST00000486665 A0A0G2JS52 829 aa17.45■□□□□ 0.38
HDAC6-229ENST00000486665 MYT1Q01538 1121 aa17.45■□□□□ 0.38
HDAC6-229ENST00000486665 SF3B2Q13435 895 aaKnown RBP17.45■□□□□ 0.38
HDAC6-229ENST00000486665 ABTB2Q8N961 1025 aa17.45■□□□□ 0.38
HDAC6-229ENST00000486665 SPATA31A5Q5VU36 1347 aa17.45■□□□□ 0.38
HDAC6-229ENST00000486665 SPATA31A7Q8IWB4 1347 aa17.45■□□□□ 0.38
HDAC6-229ENST00000486665 TNS1Q9HBL0 1735 aaKnown RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms