RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TESK2Q96S53 571 aa20.77■□□□□ 0.92
USP4-212ENST00000486549 ABCA3Q99758 1704 aa20.77■□□□□ 0.92
USP4-212ENST00000486549 MARF1Q9Y4F3 1742 aaKnown RBP20.76■□□□□ 0.91
USP4-212ENST00000486549 QTRT2Q9H974 415 aaKnown RBP20.76■□□□□ 0.91
USP4-212ENST00000486549 CDK12Q9NYV4 1490 aaPredicted RBP20.75■□□□□ 0.91
USP4-212ENST00000486549 HAP1P54257 671 aaPredicted RBP20.75■□□□□ 0.91
USP4-212ENST00000486549 RBM6P78332 1123 aaKnown RBP20.75■□□□□ 0.91
USP4-212ENST00000486549 CABLES1Q8TDN4 633 aa20.74■□□□□ 0.91
USP4-212ENST00000486549 AKAP12Q02952 1782 aa20.74■□□□□ 0.91
USP4-212ENST00000486549 FNBP4Q8N3X1 1017 aaPredicted RBP20.73■□□□□ 0.91
USP4-212ENST00000486549 USP21Q9UK80 565 aa20.73■□□□□ 0.91
USP4-212ENST00000486549 TRPC5Q9UL62 973 aaPredicted RBP20.72■□□□□ 0.91
USP4-212ENST00000486549 TMC1Q8TDI8 760 aa20.71■□□□□ 0.91
USP4-212ENST00000486549 USP6P35125 1406 aa20.7■□□□□ 0.9
USP4-212ENST00000486549 CRYBG1Q9Y4K1 1723 aa20.7■□□□□ 0.9
USP4-212ENST00000486549 NUTM2GQ5VZR2 741 aa20.7■□□□□ 0.9
USP4-212ENST00000486549 TMF1P82094 1093 aa20.69■□□□□ 0.9
USP4-212ENST00000486549 SLC24A1O60721 1099 aa20.68■□□□□ 0.9
USP4-212ENST00000486549 PHRF1Q9P1Y6 1649 aaKnown RBP20.67■□□□□ 0.9
USP4-212ENST00000486549 MON2Q7Z3U7 1717 aa20.67■□□□□ 0.9
USP4-212ENST00000486549 ABTB2Q8N961 1025 aa20.67■□□□□ 0.9
USP4-212ENST00000486549 EIF4G2P78344 907 aaKnown RBP eCLIP20.66■□□□□ 0.9
USP4-212ENST00000486549 KTN1Q86UP2 1357 aaKnown RBP20.66■□□□□ 0.9
USP4-212ENST00000486549 NRKQ7Z2Y5 1582 aa20.66■□□□□ 0.9
USP4-212ENST00000486549 CPSF1Q10570 1443 aaKnown RBP20.65■□□□□ 0.9
USP4-212ENST00000486549 HSPA5P11021 654 aaKnown RBP20.65■□□□□ 0.9
USP4-212ENST00000486549 PUS7Q96PZ0 661 aaKnown RBP20.65■□□□□ 0.9
USP4-212ENST00000486549 SLC12A5Q9H2X9 1139 aa20.65■□□□□ 0.9
USP4-212ENST00000486549 PIK3C2AO00443 1686 aa20.64■□□□□ 0.9
USP4-212ENST00000486549 CD163L1Q9NR16 1453 aa20.64■□□□□ 0.89
USP4-212ENST00000486549 BRD4O60885 1362 aaPredicted RBP20.64■□□□□ 0.89
USP4-212ENST00000486549 ZNF692Q9BU19 519 aaPredicted RBP20.64■□□□□ 0.89
USP4-212ENST00000486549 PLCH1Q4KWH8 1693 aa20.64■□□□□ 0.89
USP4-212ENST00000486549 HDGFL2Q7Z4V5 671 aaPredicted RBP20.63■□□□□ 0.89
USP4-212ENST00000486549 SSH2Q76I76 1423 aa20.62■□□□□ 0.89
USP4-212ENST00000486549 A0A1W2PP64 1363 aa20.61■□□□□ 0.89
USP4-212ENST00000486549 TTC21BQ7Z4L5 1316 aa20.61■□□□□ 0.89
USP4-212ENST00000486549 ATRNO75882 1429 aa20.61■□□□□ 0.89
USP4-212ENST00000486549 NINLQ9Y2I6 1382 aa20.6■□□□□ 0.89
USP4-212ENST00000486549 CDCA8Q53HL2 280 aa20.6■□□□□ 0.89
USP4-212ENST00000486549 UNC5CLQ8IV45 518 aa20.6■□□□□ 0.89
USP4-212ENST00000486549 TERF2IPQ9NYB0 399 aa20.6■□□□□ 0.89
USP4-212ENST00000486549 BCL9LQ86UU0 1499 aa20.59■□□□□ 0.89
USP4-212ENST00000486549 NLRP6P59044 892 aa20.59■□□□□ 0.89
USP4-212ENST00000486549 NLRP13Q86W25 1043 aa20.59■□□□□ 0.89
USP4-212ENST00000486549 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.59■□□□□ 0.89
USP4-212ENST00000486549 POLR3GLQ9BT43 218 aa20.59■□□□□ 0.89
USP4-212ENST00000486549 COL14A1Q05707 1796 aaKnown RBP20.59■□□□□ 0.89
USP4-212ENST00000486549 MYOM1P52179 1685 aa20.58■□□□□ 0.89
USP4-212ENST00000486549 UPF1Q92900 1129 aaKnown RBP eCLIP20.58■□□□□ 0.89
USP4-212ENST00000486549 RGS12O14924 1447 aa20.58■□□□□ 0.88
USP4-212ENST00000486549 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.58■□□□□ 0.88
USP4-212ENST00000486549 SLIT2O94813 1529 aa20.58■□□□□ 0.88
USP4-212ENST00000486549 USP19O94966 1318 aa20.57■□□□□ 0.88
USP4-212ENST00000486549 TTC21AQ8NDW8 1320 aa20.57■□□□□ 0.88
USP4-212ENST00000486549 ZC3H6P61129 1189 aaKnown RBP20.57■□□□□ 0.88
USP4-212ENST00000486549 GJD4Q96KN9 370 aaPredicted RBP20.57■□□□□ 0.88
USP4-212ENST00000486549 NWD2Q9ULI1 1742 aa20.57■□□□□ 0.88
USP4-212ENST00000486549 EDC4Q6P2E9 1401 aaKnown RBP20.56■□□□□ 0.88
USP4-212ENST00000486549 FAM83GA6ND36 823 aa20.56■□□□□ 0.88
USP4-212ENST00000486549 PRDM11Q9NQV5 511 aa20.56■□□□□ 0.88
USP4-212ENST00000486549 KIAA0232Q92628 1395 aa20.56■□□□□ 0.88
USP4-212ENST00000486549 SLIT3O75094 1523 aa20.54■□□□□ 0.88
USP4-212ENST00000486549 NRAPQ86VF7 1730 aa20.54■□□□□ 0.88
USP4-212ENST00000486549 ANKRD36BQ8N2N9 1353 aa20.54■□□□□ 0.88
USP4-212ENST00000486549 ZBTB7CA1YPR0 619 aa20.53■□□□□ 0.88
USP4-212ENST00000486549 CHRNA2Q15822 529 aa20.53■□□□□ 0.88
USP4-212ENST00000486549 NME9Q86XW9 330 aa20.53■□□□□ 0.88
USP4-212ENST00000486549 SOX12O15370 315 aa20.52■□□□□ 0.88
USP4-212ENST00000486549 GCP02774 474 aa20.52■□□□□ 0.88
USP4-212ENST00000486549 BTG4Q9NY30 223 aa20.52■□□□□ 0.88
USP4-212ENST00000486549 ZRANB1Q9UGI0 708 aa20.52■□□□□ 0.88
USP4-212ENST00000486549 VPS72Q15906 364 aa20.51■□□□□ 0.87
USP4-212ENST00000486549 USP54Q70EL1 1684 aa20.51■□□□□ 0.87
USP4-212ENST00000486549 CCDC9Q9Y3X0 531 aaKnown RBP20.49■□□□□ 0.87
USP4-212ENST00000486549 CPDO75976 1380 aa20.48■□□□□ 0.87
USP4-212ENST00000486549 USP31Q70CQ4 1352 aa20.47■□□□□ 0.87
USP4-212ENST00000486549 CCDC125Q86Z20 511 aa20.47■□□□□ 0.87
USP4-212ENST00000486549 KIF20BQ96Q89 1820 aa20.47■□□□□ 0.87
USP4-212ENST00000486549 GLI3P10071 1580 aa20.46■□□□□ 0.87
USP4-212ENST00000486549 LMO7Q8WWI1 1683 aa20.46■□□□□ 0.87
USP4-212ENST00000486549 C11orf95C9JLR9 678 aaPredicted RBP20.46■□□□□ 0.87
USP4-212ENST00000486549 KCNH5Q8NCM2 988 aa20.46■□□□□ 0.87
USP4-212ENST00000486549 NFAT5O94916 1531 aa20.46■□□□□ 0.87
USP4-212ENST00000486549 STRN4Q9NRL3 753 aa20.45■□□□□ 0.86
USP4-212ENST00000486549 OVOS2A0A0J9YW53 1432 aa20.44■□□□□ 0.86
USP4-212ENST00000486549 OVOS2Q6IE36 1432 aa20.44■□□□□ 0.86
USP4-212ENST00000486549 CAMTA1Q9Y6Y1 1673 aa20.44■□□□□ 0.86
USP4-212ENST00000486549 LTN1O94822 1766 aa20.44■□□□□ 0.86
USP4-212ENST00000486549 NSD3Q9BZ95 1437 aa20.44■□□□□ 0.86
USP4-212ENST00000486549 ONECUT3O60422 494 aaPredicted RBP20.42■□□□□ 0.86
USP4-212ENST00000486549 COL18A1P39060 1754 aa20.41■□□□□ 0.86
USP4-212ENST00000486549 RGPD5Q99666 1765 aa20.41■□□□□ 0.86
USP4-212ENST00000486549 EVA1CP58658 441 aa20.41■□□□□ 0.86
USP4-212ENST00000486549 COG3Q96JB2 828 aa20.41■□□□□ 0.86
USP4-212ENST00000486549 CARD14Q9BXL6 1004 aa20.41■□□□□ 0.86
USP4-212ENST00000486549 KIF7Q2M1P5 1343 aa20.4■□□□□ 0.86
USP4-212ENST00000486549 AATKQ6ZMQ8 1374 aa20.4■□□□□ 0.86
USP4-212ENST00000486549 ARHGEF25Q86VW2 580 aa20.4■□□□□ 0.86
USP4-212ENST00000486549 GGNBP2Q9H3C7 697 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms