RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 NGLY1Q96IV0 654 aa12.61□□□□□ -0.39
COL12A1-208ENST00000486533 TRAK1Q9UPV9 953 aa12.61□□□□□ -0.39
COL12A1-208ENST00000486533 COL22A1Q8NFW1 1626 aaPredicted RBP12.61□□□□□ -0.39
COL12A1-208ENST00000486533 STAC3Q96MF2 364 aa12.6□□□□□ -0.39
COL12A1-208ENST00000486533 HIRIP3Q9BW71 556 aaPredicted RBP12.59□□□□□ -0.39
COL12A1-208ENST00000486533 PHF8Q9UPP1 1060 aa12.59□□□□□ -0.39
COL12A1-208ENST00000486533 PRR29P0C7W0 189 aa12.58□□□□□ -0.4
COL12A1-208ENST00000486533 QTRT2Q9H974 415 aaKnown RBP12.58□□□□□ -0.4
COL12A1-208ENST00000486533 ADGRB2O60241 1585 aa12.58□□□□□ -0.4
COL12A1-208ENST00000486533 MINK1Q8N4C8 1332 aaPredicted RBP12.57□□□□□ -0.4
COL12A1-208ENST00000486533 KRT28Q7Z3Y7 464 aa12.56□□□□□ -0.4
COL12A1-208ENST00000486533 USP21Q9UK80 565 aa12.56□□□□□ -0.4
COL12A1-208ENST00000486533 CDK12Q9NYV4 1490 aaPredicted RBP12.56□□□□□ -0.4
COL12A1-208ENST00000486533 SPATA31A3Q5VYP0 1347 aa12.56□□□□□ -0.4
COL12A1-208ENST00000486533 RBM6P78332 1123 aaKnown RBP12.56□□□□□ -0.4
COL12A1-208ENST00000486533 MARF1Q9Y4F3 1742 aaKnown RBP12.55□□□□□ -0.4
COL12A1-208ENST00000486533 ANKARQ7Z5J8 1434 aa12.55□□□□□ -0.4
COL12A1-208ENST00000486533 USP32Q8NFA0 1604 aa12.55□□□□□ -0.4
COL12A1-208ENST00000486533 PSME1Q06323 249 aa12.55□□□□□ -0.4
COL12A1-208ENST00000486533 LMOD2Q6P5Q4 547 aa12.55□□□□□ -0.4
COL12A1-208ENST00000486533 PMFBP1Q8TBY8 1022 aa12.55□□□□□ -0.4
COL12A1-208ENST00000486533 ARHGEF28Q8N1W1 1705 aaKnown RBP12.55□□□□□ -0.4
COL12A1-208ENST00000486533 EIF3AQ14152 1382 aaKnown RBP12.54□□□□□ -0.4
COL12A1-208ENST00000486533 PLEKHG5O94827 1062 aa12.54□□□□□ -0.4
COL12A1-208ENST00000486533 HAP1P54257 671 aaPredicted RBP12.54□□□□□ -0.4
COL12A1-208ENST00000486533 RGS12O14924 1447 aa12.54□□□□□ -0.4
COL12A1-208ENST00000486533 TNS3Q68CZ2 1445 aa12.54□□□□□ -0.4
COL12A1-208ENST00000486533 SPDYE4A6NLX3 237 aa12.53□□□□□ -0.4
COL12A1-208ENST00000486533 EVX2Q03828 476 aa12.53□□□□□ -0.4
COL12A1-208ENST00000486533 FNBP4Q8N3X1 1017 aaPredicted RBP12.53□□□□□ -0.4
COL12A1-208ENST00000486533 TRPC5Q9UL62 973 aaPredicted RBP12.53□□□□□ -0.4
COL12A1-208ENST00000486533 TULP4Q9NRJ4 1543 aa12.53□□□□□ -0.4
COL12A1-208ENST00000486533 WASLO00401 505 aaPredicted RBP12.52□□□□□ -0.4
COL12A1-208ENST00000486533 CHADLQ6NUI6 762 aa12.52□□□□□ -0.4
COL12A1-208ENST00000486533 KIAA1210Q9ULL0 1709 aa12.52□□□□□ -0.4
COL12A1-208ENST00000486533 PRR36Q9H6K5 1346 aa12.51□□□□□ -0.41
COL12A1-208ENST00000486533 CABLES1Q8TDN4 633 aa12.51□□□□□ -0.41
COL12A1-208ENST00000486533 UPF1Q92900 1129 aaKnown RBP eCLIP12.51□□□□□ -0.41
COL12A1-208ENST00000486533 SBNO1A3KN83 1393 aa12.51□□□□□ -0.41
COL12A1-208ENST00000486533 ARHGEF10O15013 1369 aa12.51□□□□□ -0.41
COL12A1-208ENST00000486533 TONSLQ96HA7 1378 aa12.51□□□□□ -0.41
COL12A1-208ENST00000486533 ATRNO75882 1429 aa12.5□□□□□ -0.41
COL12A1-208ENST00000486533 EP400Q96L91 3159 aa12.5□□□□□ -0.41
COL12A1-208ENST00000486533 GPRASP1Q5JY77 1395 aa12.5□□□□□ -0.41
COL12A1-208ENST00000486533 BCL9LQ86UU0 1499 aa12.5□□□□□ -0.41
COL12A1-208ENST00000486533 ITSN1Q15811 1721 aa12.49□□□□□ -0.41
COL12A1-208ENST00000486533 NGDNQ8NEJ9 315 aaKnown RBP12.49□□□□□ -0.41
COL12A1-208ENST00000486533 NBPF1Q3BBV0 1214 aa12.48□□□□□ -0.41
COL12A1-208ENST00000486533 ABCA3Q99758 1704 aa12.48□□□□□ -0.41
COL12A1-208ENST00000486533 TRPM3Q9HCF6 1732 aaPredicted RBP12.48□□□□□ -0.41
COL12A1-208ENST00000486533 C19orf67A6NJJ6 358 aa12.47□□□□□ -0.41
COL12A1-208ENST00000486533 ATP7BP35670 1465 aa12.47□□□□□ -0.41
COL12A1-208ENST00000486533 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.47□□□□□ -0.41
COL12A1-208ENST00000486533 SLIT2O94813 1529 aa12.47□□□□□ -0.41
COL12A1-208ENST00000486533 PAK3O75914 559 aaPredicted RBP12.47□□□□□ -0.41
COL12A1-208ENST00000486533 UNC5CLQ8IV45 518 aa12.47□□□□□ -0.41
COL12A1-208ENST00000486533 NUDT16Q96DE0 195 aaKnown RBP12.47□□□□□ -0.41
COL12A1-208ENST00000486533 SIN3AQ96ST3 1273 aa12.47□□□□□ -0.41
COL12A1-208ENST00000486533 CCER2I3L3R5 266 aa12.46□□□□□ -0.42
COL12A1-208ENST00000486533 L3MBTL2Q969R5 705 aa12.46□□□□□ -0.42
COL12A1-208ENST00000486533 GJD4Q96KN9 370 aaPredicted RBP12.46□□□□□ -0.42
COL12A1-208ENST00000486533 CDK19Q9BWU1 502 aa12.46□□□□□ -0.42
COL12A1-208ENST00000486533 PLCH1Q4KWH8 1693 aa12.45□□□□□ -0.42
COL12A1-208ENST00000486533 ALS2Q96Q42 1657 aa12.45□□□□□ -0.42
COL12A1-208ENST00000486533 ATAD2Q6PL18 1390 aa12.45□□□□□ -0.42
COL12A1-208ENST00000486533 CENPJQ9HC77 1338 aaPredicted RBP12.44□□□□□ -0.42
COL12A1-208ENST00000486533 CCDC9Q9Y3X0 531 aaKnown RBP12.43□□□□□ -0.42
COL12A1-208ENST00000486533 NWD2Q9ULI1 1742 aa12.43□□□□□ -0.42
COL12A1-208ENST00000486533 TOPAZ1Q8N9V7 1692 aa12.43□□□□□ -0.42
COL12A1-208ENST00000486533 QRICH2Q9H0J4 1663 aa12.43□□□□□ -0.42
COL12A1-208ENST00000486533 RALGAPBQ86X10 1494 aa12.43□□□□□ -0.42
COL12A1-208ENST00000486533 SRPK2P78362 688 aaKnown RBP12.43□□□□□ -0.42
COL12A1-208ENST00000486533 CCDC61Q9Y6R9 512 aa12.43□□□□□ -0.42
COL12A1-208ENST00000486533 GLI3P10071 1580 aa12.43□□□□□ -0.42
COL12A1-208ENST00000486533 ANP32CO43423 234 aa12.42□□□□□ -0.42
COL12A1-208ENST00000486533 TRPM1Q7Z4N2 1603 aa12.42□□□□□ -0.42
COL12A1-208ENST00000486533 FAM83GA6ND36 823 aa12.41□□□□□ -0.42
COL12A1-208ENST00000486533 ACEP12821 1306 aa12.41□□□□□ -0.42
COL12A1-208ENST00000486533 VPS72Q15906 364 aa12.4□□□□□ -0.42
COL12A1-208ENST00000486533 CABP2Q9NPB3 220 aa12.4□□□□□ -0.42
COL12A1-208ENST00000486533 POLR3AO14802 1390 aaPredicted RBP12.4□□□□□ -0.42
COL12A1-208ENST00000486533 ROCK2O75116 1388 aaKnown RBP12.4□□□□□ -0.42
COL12A1-208ENST00000486533 CRYBG1Q9Y4K1 1723 aa12.4□□□□□ -0.42
COL12A1-208ENST00000486533 COL14A1Q05707 1796 aaKnown RBP12.4□□□□□ -0.42
COL12A1-208ENST00000486533 NUTM2GQ5VZR2 741 aa12.39□□□□□ -0.43
COL12A1-208ENST00000486533 BTG4Q9NY30 223 aa12.39□□□□□ -0.43
COL12A1-208ENST00000486533 PPIP5K1Q6PFW1 1433 aa12.39□□□□□ -0.43
COL12A1-208ENST00000486533 NBPF8Q3BBV2 869 aa12.39□□□□□ -0.43
COL12A1-208ENST00000486533 SUPT16HQ9Y5B9 1047 aaKnown RBP12.39□□□□□ -0.43
COL12A1-208ENST00000486533 NRAPQ86VF7 1730 aa12.38□□□□□ -0.43
COL12A1-208ENST00000486533 A0A0G2JS52 829 aa12.38□□□□□ -0.43
COL12A1-208ENST00000486533 PLEKHG3A1L390 1219 aa12.38□□□□□ -0.43
COL12A1-208ENST00000486533 NEFLP07196 543 aa12.38□□□□□ -0.43
COL12A1-208ENST00000486533 PRDM11Q9NQV5 511 aa12.38□□□□□ -0.43
COL12A1-208ENST00000486533 FARP1Q9Y4F1 1045 aaPredicted RBP12.38□□□□□ -0.43
COL12A1-208ENST00000486533 SRCAPQ6ZRS2 3230 aa12.38□□□□□ -0.43
COL12A1-208ENST00000486533 BRWD3Q6RI45 1802 aa12.37□□□□□ -0.43
COL12A1-208ENST00000486533 PHRF1Q9P1Y6 1649 aaKnown RBP12.37□□□□□ -0.43
COL12A1-208ENST00000486533 SEPT12Q8IYM1 358 aa12.37□□□□□ -0.43
COL12A1-208ENST00000486533 KIAA0232Q92628 1395 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms