RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 RALGAPBQ86X10 1494 aa8.41□□□□□ -1.06
CUX1-208ENST00000485792 PRR36Q9H6K5 1346 aa8.41□□□□□ -1.06
CUX1-208ENST00000485792 ECM2O94769 699 aaPredicted RBP8.41□□□□□ -1.06
CUX1-208ENST00000485792 NBPF1Q3BBV0 1214 aa8.41□□□□□ -1.06
CUX1-208ENST00000485792 NBPF8Q3BBV2 869 aa8.41□□□□□ -1.06
CUX1-208ENST00000485792 BRINP3Q76B58 766 aa8.41□□□□□ -1.06
CUX1-208ENST00000485792 C19orf44Q9H6X5 657 aa8.41□□□□□ -1.06
CUX1-208ENST00000485792 MYOM1P52179 1685 aa8.4□□□□□ -1.06
CUX1-208ENST00000485792 ITSN1Q15811 1721 aa8.4□□□□□ -1.07
CUX1-208ENST00000485792 PHRF1Q9P1Y6 1649 aaKnown RBP8.4□□□□□ -1.07
CUX1-208ENST00000485792 GPRASP1Q5JY77 1395 aa8.39□□□□□ -1.07
CUX1-208ENST00000485792 L3MBTL2Q969R5 705 aa8.39□□□□□ -1.07
CUX1-208ENST00000485792 PHF12Q96QT6 1004 aa8.39□□□□□ -1.07
CUX1-208ENST00000485792 AKAP12Q02952 1782 aa8.39□□□□□ -1.07
CUX1-208ENST00000485792 ILDR2Q71H61 639 aa8.38□□□□□ -1.07
CUX1-208ENST00000485792 DCAF11Q8TEB1 546 aa8.38□□□□□ -1.07
CUX1-208ENST00000485792 SLAIN2Q9P270 581 aa8.38□□□□□ -1.07
CUX1-208ENST00000485792 RGS17Q9UGC6 210 aaPredicted RBP8.38□□□□□ -1.07
CUX1-208ENST00000485792 NRAPQ86VF7 1730 aa8.37□□□□□ -1.07
CUX1-208ENST00000485792 PLCH1Q4KWH8 1693 aa8.37□□□□□ -1.07
CUX1-208ENST00000485792 BCANQ96GW7 911 aa8.37□□□□□ -1.07
CUX1-208ENST00000485792 ORAI2Q96SN7 254 aa8.37□□□□□ -1.07
CUX1-208ENST00000485792 STK26Q9P289 416 aa8.37□□□□□ -1.07
CUX1-208ENST00000485792 KDM2AQ9Y2K7 1162 aa8.37□□□□□ -1.07
CUX1-208ENST00000485792 CCDC61Q9Y6R9 512 aa8.37□□□□□ -1.07
CUX1-208ENST00000485792 MON2Q7Z3U7 1717 aa8.37□□□□□ -1.07
CUX1-208ENST00000485792 PIK3C2AO00443 1686 aa8.37□□□□□ -1.07
CUX1-208ENST00000485792 PNPLA6Q8IY17 1366 aa8.36□□□□□ -1.07
CUX1-208ENST00000485792 CADPS2Q86UW7 1296 aa8.36□□□□□ -1.07
CUX1-208ENST00000485792 USP54Q70EL1 1684 aa8.35□□□□□ -1.07
CUX1-208ENST00000485792 CD163L1Q9NR16 1453 aa8.35□□□□□ -1.07
CUX1-208ENST00000485792 PRAM1Q96QH2 718 aa8.35□□□□□ -1.07
CUX1-208ENST00000485792 SOS2Q07890 1332 aaPredicted RBP8.33□□□□□ -1.08
CUX1-208ENST00000485792 RGL2O15211 777 aa8.33□□□□□ -1.08
CUX1-208ENST00000485792 CHRM1P11229 460 aaPredicted RBP8.33□□□□□ -1.08
CUX1-208ENST00000485792 SAFB2Q14151 953 aaKnown RBP eCLIP8.33□□□□□ -1.08
CUX1-208ENST00000485792 ANKARQ7Z5J8 1434 aa8.33□□□□□ -1.08
CUX1-208ENST00000485792 PCGF6Q9BYE7 350 aa8.33□□□□□ -1.08
CUX1-208ENST00000485792 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.33□□□□□ -1.08
CUX1-208ENST00000485792 TRAK1Q9UPV9 953 aa8.33□□□□□ -1.08
CUX1-208ENST00000485792 NUTM2FA1L443 756 aa8.32□□□□□ -1.08
CUX1-208ENST00000485792 HIRIP3Q9BW71 556 aaPredicted RBP8.32□□□□□ -1.08
CUX1-208ENST00000485792 LMO7Q8WWI1 1683 aa8.32□□□□□ -1.08
CUX1-208ENST00000485792 MINK1Q8N4C8 1332 aaPredicted RBP8.31□□□□□ -1.08
CUX1-208ENST00000485792 GALR2O43603 387 aaPredicted RBP8.31□□□□□ -1.08
CUX1-208ENST00000485792 PYGBP11216 843 aa8.31□□□□□ -1.08
CUX1-208ENST00000485792 ATF3P18847 181 aa8.31□□□□□ -1.08
CUX1-208ENST00000485792 XPCQ01831 940 aaPredicted RBP8.31□□□□□ -1.08
CUX1-208ENST00000485792 NEUROD1Q13562 356 aa8.31□□□□□ -1.08
CUX1-208ENST00000485792 GLI3P10071 1580 aa8.31□□□□□ -1.08
CUX1-208ENST00000485792 COL18A1P39060 1754 aa8.3□□□□□ -1.08
CUX1-208ENST00000485792 SSH2Q76I76 1423 aa8.3□□□□□ -1.08
CUX1-208ENST00000485792 RNF25Q96BH1 459 aaPredicted RBP8.3□□□□□ -1.08
CUX1-208ENST00000485792 KIF12Q96FN5 646 aa8.3□□□□□ -1.08
CUX1-208ENST00000485792 DCBLD2Q96PD2 775 aa8.3□□□□□ -1.08
CUX1-208ENST00000485792 JCADQ9P266 1359 aa8.3□□□□□ -1.08
CUX1-208ENST00000485792 CLSPNQ9HAW4 1339 aa8.29□□□□□ -1.08
CUX1-208ENST00000485792 TNS3Q68CZ2 1445 aa8.29□□□□□ -1.08
CUX1-208ENST00000485792 WNK3Q9BYP7 1800 aa8.29□□□□□ -1.08
CUX1-208ENST00000485792 MS4A3Q96HJ5 214 aa8.29□□□□□ -1.08
CUX1-208ENST00000485792 POLR3AO14802 1390 aaPredicted RBP8.28□□□□□ -1.08
CUX1-208ENST00000485792 DISP3Q9P2K9 1392 aa8.28□□□□□ -1.08
CUX1-208ENST00000485792 EP400Q96L91 3159 aa8.28□□□□□ -1.08
CUX1-208ENST00000485792 BRWD3Q6RI45 1802 aa8.28□□□□□ -1.08
CUX1-208ENST00000485792 NWD2Q9ULI1 1742 aa8.28□□□□□ -1.08
CUX1-208ENST00000485792 SLIT3O75094 1523 aa8.28□□□□□ -1.08
CUX1-208ENST00000485792 RGPD5Q99666 1765 aa8.27□□□□□ -1.08
CUX1-208ENST00000485792 ROCK2O75116 1388 aaKnown RBP8.27□□□□□ -1.09
CUX1-208ENST00000485792 SBNO2Q9Y2G9 1366 aa8.27□□□□□ -1.09
CUX1-208ENST00000485792 MAP3K13O43283 966 aa8.27□□□□□ -1.09
CUX1-208ENST00000485792 POTEAQ6S8J7 498 aa8.27□□□□□ -1.09
CUX1-208ENST00000485792 C14orf37Q86TY3 774 aa8.27□□□□□ -1.09
CUX1-208ENST00000485792 NFAT5O94916 1531 aa8.27□□□□□ -1.09
CUX1-208ENST00000485792 BCL9LQ86UU0 1499 aa8.26□□□□□ -1.09
CUX1-208ENST00000485792 SLIT2O94813 1529 aa8.26□□□□□ -1.09
CUX1-208ENST00000485792 RIOK3O14730 519 aaKnown RBP8.26□□□□□ -1.09
CUX1-208ENST00000485792 TESK2Q96S53 571 aa8.26□□□□□ -1.09
CUX1-208ENST00000485792 TONSLQ96HA7 1378 aa8.25□□□□□ -1.09
CUX1-208ENST00000485792 THSD7AQ9UPZ6 1657 aa8.25□□□□□ -1.09
CUX1-208ENST00000485792 WASLO00401 505 aaPredicted RBP8.25□□□□□ -1.09
CUX1-208ENST00000485792 FOXO3O43524 673 aa8.25□□□□□ -1.09
CUX1-208ENST00000485792 SGIP1Q9BQI5 828 aa8.25□□□□□ -1.09
CUX1-208ENST00000485792 TIMELESSQ9UNS1 1208 aa8.25□□□□□ -1.09
CUX1-208ENST00000485792 PCDHB13Q9Y5F0 798 aa8.25□□□□□ -1.09
CUX1-208ENST00000485792 RGS12O14924 1447 aa8.25□□□□□ -1.09
CUX1-208ENST00000485792 CPSF1Q10570 1443 aaKnown RBP8.25□□□□□ -1.09
CUX1-208ENST00000485792 PPIP5K1Q6PFW1 1433 aa8.25□□□□□ -1.09
CUX1-208ENST00000485792 SPATA31A6Q5VVP1 1343 aa8.25□□□□□ -1.09
CUX1-208ENST00000485792 SPATA31A3Q5VYP0 1347 aa8.25□□□□□ -1.09
CUX1-208ENST00000485792 CENPJQ9HC77 1338 aaPredicted RBP8.25□□□□□ -1.09
CUX1-208ENST00000485792 PEAK1Q9H792 1746 aa8.24□□□□□ -1.09
CUX1-208ENST00000485792 USP6P35125 1406 aa8.24□□□□□ -1.09
CUX1-208ENST00000485792 PMFBP1Q8TBY8 1022 aa8.24□□□□□ -1.09
CUX1-208ENST00000485792 LTN1O94822 1766 aa8.24□□□□□ -1.09
CUX1-208ENST00000485792 COL14A1Q05707 1796 aaKnown RBP8.24□□□□□ -1.09
CUX1-208ENST00000485792 KIF20BQ96Q89 1820 aa8.24□□□□□ -1.09
CUX1-208ENST00000485792 SBNO1A3KN83 1393 aa8.23□□□□□ -1.09
CUX1-208ENST00000485792 ANKRD26Q9UPS8 1709 aa8.23□□□□□ -1.09
CUX1-208ENST00000485792 ESCO1Q5FWF5 840 aa8.23□□□□□ -1.09
CUX1-208ENST00000485792 LRRC59Q96AG4 307 aaKnown RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms