RNA–Protein interactions for RNA: ENST00000485780.1

SHROOM3-207, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 531 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-207ENST00000485780 KRT28Q7Z3Y7 464 aa13.06□□□□□ -0.32
SHROOM3-207ENST00000485780 CABP2Q9NPB3 220 aa13.06□□□□□ -0.32
SHROOM3-207ENST00000485780 PSME1Q06323 249 aa13.05□□□□□ -0.32
SHROOM3-207ENST00000485780 CPSF1Q10570 1443 aaKnown RBP13.05□□□□□ -0.32
SHROOM3-207ENST00000485780 COL22A1Q8NFW1 1626 aaPredicted RBP13.04□□□□□ -0.32
SHROOM3-207ENST00000485780 CDCA8Q53HL2 280 aa13.04□□□□□ -0.32
SHROOM3-207ENST00000485780 HAP1P54257 671 aaPredicted RBP13.03□□□□□ -0.32
SHROOM3-207ENST00000485780 LMOD2Q6P5Q4 547 aa13.03□□□□□ -0.32
SHROOM3-207ENST00000485780 PIAS4Q8N2W9 510 aaPredicted RBP13.03□□□□□ -0.32
SHROOM3-207ENST00000485780 PMFBP1Q8TBY8 1022 aa13.03□□□□□ -0.32
SHROOM3-207ENST00000485780 QTRT2Q9H974 415 aaKnown RBP13.03□□□□□ -0.32
SHROOM3-207ENST00000485780 SPATA31A3Q5VYP0 1347 aa13.03□□□□□ -0.32
SHROOM3-207ENST00000485780 SSH2Q76I76 1423 aa13.03□□□□□ -0.32
SHROOM3-207ENST00000485780 USP54Q70EL1 1684 aa13.02□□□□□ -0.32
SHROOM3-207ENST00000485780 CRYBG1Q9Y4K1 1723 aa13.02□□□□□ -0.32
SHROOM3-207ENST00000485780 USP21Q9UK80 565 aa13.02□□□□□ -0.33
SHROOM3-207ENST00000485780 BRD4O60885 1362 aaPredicted RBP13.02□□□□□ -0.33
SHROOM3-207ENST00000485780 TNS3Q68CZ2 1445 aa13.02□□□□□ -0.33
SHROOM3-207ENST00000485780 RBM6P78332 1123 aaKnown RBP13.01□□□□□ -0.33
SHROOM3-207ENST00000485780 SBNO1A3KN83 1393 aa13.01□□□□□ -0.33
SHROOM3-207ENST00000485780 USP6P35125 1406 aa13.01□□□□□ -0.33
SHROOM3-207ENST00000485780 ABCA3Q99758 1704 aa13.01□□□□□ -0.33
SHROOM3-207ENST00000485780 ACEP12821 1306 aa13□□□□□ -0.33
SHROOM3-207ENST00000485780 C11orf95C9JLR9 678 aaPredicted RBP13□□□□□ -0.33
SHROOM3-207ENST00000485780 PLEKHG5O94827 1062 aa13□□□□□ -0.33
SHROOM3-207ENST00000485780 NGDNQ8NEJ9 315 aaKnown RBP13□□□□□ -0.33
SHROOM3-207ENST00000485780 MARF1Q9Y4F3 1742 aaKnown RBP12.99□□□□□ -0.33
SHROOM3-207ENST00000485780 PIK3C2AO00443 1686 aa12.99□□□□□ -0.33
SHROOM3-207ENST00000485780 CDK12Q9NYV4 1490 aaPredicted RBP12.99□□□□□ -0.33
SHROOM3-207ENST00000485780 ARHGEF10O15013 1369 aa12.99□□□□□ -0.33
SHROOM3-207ENST00000485780 ANKRD36BQ8N2N9 1353 aa12.99□□□□□ -0.33
SHROOM3-207ENST00000485780 KIF7Q2M1P5 1343 aa12.99□□□□□ -0.33
SHROOM3-207ENST00000485780 FNBP4Q8N3X1 1017 aaPredicted RBP12.99□□□□□ -0.33
SHROOM3-207ENST00000485780 CABP1Q9NZU7 370 aa12.99□□□□□ -0.33
SHROOM3-207ENST00000485780 TRPC5Q9UL62 973 aaPredicted RBP12.99□□□□□ -0.33
SHROOM3-207ENST00000485780 A0A1W2PP64 1363 aa12.98□□□□□ -0.33
SHROOM3-207ENST00000485780 CCDC7Q96M83 1385 aa12.98□□□□□ -0.33
SHROOM3-207ENST00000485780 ZNF692Q9BU19 519 aaPredicted RBP12.97□□□□□ -0.33
SHROOM3-207ENST00000485780 SLC12A5Q9H2X9 1139 aa12.97□□□□□ -0.33
SHROOM3-207ENST00000485780 EDC4Q6P2E9 1401 aaKnown RBP12.96□□□□□ -0.33
SHROOM3-207ENST00000485780 WASHC2AQ641Q2 1341 aa12.96□□□□□ -0.33
SHROOM3-207ENST00000485780 PAK3O75914 559 aaPredicted RBP12.96□□□□□ -0.33
SHROOM3-207ENST00000485780 KIF20BQ96Q89 1820 aa12.96□□□□□ -0.33
SHROOM3-207ENST00000485780 RGS12O14924 1447 aa12.96□□□□□ -0.34
SHROOM3-207ENST00000485780 PHRF1Q9P1Y6 1649 aaKnown RBP12.95□□□□□ -0.34
SHROOM3-207ENST00000485780 CABLES1Q8TDN4 633 aa12.95□□□□□ -0.34
SHROOM3-207ENST00000485780 ATRNO75882 1429 aa12.95□□□□□ -0.34
SHROOM3-207ENST00000485780 KTN1Q86UP2 1357 aaKnown RBP12.94□□□□□ -0.34
SHROOM3-207ENST00000485780 ANKRD26Q9UPS8 1709 aa12.94□□□□□ -0.34
SHROOM3-207ENST00000485780 TERF2IPQ9NYB0 399 aa12.94□□□□□ -0.34
SHROOM3-207ENST00000485780 UNC5CLQ8IV45 518 aa12.93□□□□□ -0.34
SHROOM3-207ENST00000485780 TMC1Q8TDI8 760 aa12.93□□□□□ -0.34
SHROOM3-207ENST00000485780 SLIT3O75094 1523 aa12.93□□□□□ -0.34
SHROOM3-207ENST00000485780 TTC21AQ8NDW8 1320 aa12.92□□□□□ -0.34
SHROOM3-207ENST00000485780 BCL9LQ86UU0 1499 aa12.92□□□□□ -0.34
SHROOM3-207ENST00000485780 HDGFL2Q7Z4V5 671 aaPredicted RBP12.92□□□□□ -0.34
SHROOM3-207ENST00000485780 TTC21BQ7Z4L5 1316 aa12.91□□□□□ -0.34
SHROOM3-207ENST00000485780 UPF1Q92900 1129 aaKnown RBP eCLIP12.91□□□□□ -0.34
SHROOM3-207ENST00000485780 CCDC9Q9Y3X0 531 aaKnown RBP12.91□□□□□ -0.34
SHROOM3-207ENST00000485780 SLIT2O94813 1529 aa12.91□□□□□ -0.34
SHROOM3-207ENST00000485780 USP31Q70CQ4 1352 aa12.91□□□□□ -0.34
SHROOM3-207ENST00000485780 USP19O94966 1318 aa12.9□□□□□ -0.34
SHROOM3-207ENST00000485780 OVOS2A0A0J9YW53 1432 aa12.9□□□□□ -0.34
SHROOM3-207ENST00000485780 OVOS2Q6IE36 1432 aa12.9□□□□□ -0.34
SHROOM3-207ENST00000485780 GJD4Q96KN9 370 aaPredicted RBP12.9□□□□□ -0.34
SHROOM3-207ENST00000485780 NSD3Q9BZ95 1437 aa12.89□□□□□ -0.35
SHROOM3-207ENST00000485780 CARD14Q9BXL6 1004 aa12.89□□□□□ -0.35
SHROOM3-207ENST00000485780 NFAT5O94916 1531 aa12.88□□□□□ -0.35
SHROOM3-207ENST00000485780 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.88□□□□□ -0.35
SHROOM3-207ENST00000485780 PLCH1Q4KWH8 1693 aa12.86□□□□□ -0.35
SHROOM3-207ENST00000485780 FAM83GA6ND36 823 aa12.86□□□□□ -0.35
SHROOM3-207ENST00000485780 VPS72Q15906 364 aa12.86□□□□□ -0.35
SHROOM3-207ENST00000485780 NUTM2GQ5VZR2 741 aa12.86□□□□□ -0.35
SHROOM3-207ENST00000485780 PANK3Q9H999 370 aa12.86□□□□□ -0.35
SHROOM3-207ENST00000485780 PRDM11Q9NQV5 511 aa12.86□□□□□ -0.35
SHROOM3-207ENST00000485780 BTG4Q9NY30 223 aa12.86□□□□□ -0.35
SHROOM3-207ENST00000485780 NWD2Q9ULI1 1742 aa12.85□□□□□ -0.35
SHROOM3-207ENST00000485780 NSD2O96028 1365 aa12.85□□□□□ -0.35
SHROOM3-207ENST00000485780 NPC1L1Q9UHC9 1359 aa12.85□□□□□ -0.35
SHROOM3-207ENST00000485780 ABCC6O95255 1503 aa12.85□□□□□ -0.35
SHROOM3-207ENST00000485780 PER1O15534 1290 aaPredicted RBP12.85□□□□□ -0.35
SHROOM3-207ENST00000485780 ABTB2Q8N961 1025 aa12.85□□□□□ -0.35
SHROOM3-207ENST00000485780 POLR3GLQ9BT43 218 aa12.85□□□□□ -0.35
SHROOM3-207ENST00000485780 LMO7Q8WWI1 1683 aa12.85□□□□□ -0.35
SHROOM3-207ENST00000485780 LTN1O94822 1766 aa12.84□□□□□ -0.35
SHROOM3-207ENST00000485780 A0A0G2JS52 829 aa12.84□□□□□ -0.35
SHROOM3-207ENST00000485780 MYT1Q01538 1121 aa12.84□□□□□ -0.35
SHROOM3-207ENST00000485780 NLRP13Q86W25 1043 aa12.84□□□□□ -0.35
SHROOM3-207ENST00000485780 NME9Q86XW9 330 aa12.84□□□□□ -0.35
SHROOM3-207ENST00000485780 GLI3P10071 1580 aa12.84□□□□□ -0.35
SHROOM3-207ENST00000485780 CGNL1Q0VF96 1302 aa12.84□□□□□ -0.35
SHROOM3-207ENST00000485780 COL18A1P39060 1754 aa12.84□□□□□ -0.35
SHROOM3-207ENST00000485780 COL14A1Q05707 1796 aaKnown RBP12.84□□□□□ -0.35
SHROOM3-207ENST00000485780 CPDO75976 1380 aa12.83□□□□□ -0.36
SHROOM3-207ENST00000485780 FYB1O15117 783 aa12.83□□□□□ -0.36
SHROOM3-207ENST00000485780 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.83□□□□□ -0.36
SHROOM3-207ENST00000485780 KIAA0232Q92628 1395 aa12.82□□□□□ -0.36
SHROOM3-207ENST00000485780 NRAPQ86VF7 1730 aa12.82□□□□□ -0.36
SHROOM3-207ENST00000485780 ZNF316A6NFI3 1004 aaPredicted RBP12.82□□□□□ -0.36
SHROOM3-207ENST00000485780 ZC3H6P61129 1189 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms