RNA–Protein interactions for RNA: ENST00000482996.5

VARS-225, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-225ENST00000482996 ALS2Q96Q42 1657 aa19.71■□□□□ 0.75
VARS-225ENST00000482996 ATRNO75882 1429 aa19.7■□□□□ 0.74
VARS-225ENST00000482996 BCL9LQ86UU0 1499 aa19.7■□□□□ 0.74
VARS-225ENST00000482996 UNC5CLQ8IV45 518 aa19.69■□□□□ 0.74
VARS-225ENST00000482996 SLIT2O94813 1529 aa19.68■□□□□ 0.74
VARS-225ENST00000482996 CABP1Q9NZU7 370 aa19.68■□□□□ 0.74
VARS-225ENST00000482996 CLSPNQ9HAW4 1339 aa19.68■□□□□ 0.74
VARS-225ENST00000482996 ABCA3Q99758 1704 aa19.67■□□□□ 0.74
VARS-225ENST00000482996 SBNO2Q9Y2G9 1366 aa19.67■□□□□ 0.74
VARS-225ENST00000482996 RGS12O14924 1447 aa19.66■□□□□ 0.74
VARS-225ENST00000482996 BRD4O60885 1362 aaPredicted RBP19.65■□□□□ 0.74
VARS-225ENST00000482996 FAM83GA6ND36 823 aa19.64■□□□□ 0.73
VARS-225ENST00000482996 ABTB2Q8N961 1025 aa19.64■□□□□ 0.73
VARS-225ENST00000482996 GJD4Q96KN9 370 aaPredicted RBP19.64■□□□□ 0.73
VARS-225ENST00000482996 ATAD2Q6PL18 1390 aa19.64■□□□□ 0.73
VARS-225ENST00000482996 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.63■□□□□ 0.73
VARS-225ENST00000482996 NUTM2GQ5VZR2 741 aa19.63■□□□□ 0.73
VARS-225ENST00000482996 TIMELESSQ9UNS1 1208 aa19.63■□□□□ 0.73
VARS-225ENST00000482996 PRDM11Q9NQV5 511 aa19.62■□□□□ 0.73
VARS-225ENST00000482996 VPS72Q15906 364 aa19.61■□□□□ 0.73
VARS-225ENST00000482996 USP6P35125 1406 aa19.6■□□□□ 0.73
VARS-225ENST00000482996 NWD2Q9ULI1 1742 aa19.6■□□□□ 0.73
VARS-225ENST00000482996 NLRP13Q86W25 1043 aa19.6■□□□□ 0.73
VARS-225ENST00000482996 ZNF692Q9BU19 519 aaPredicted RBP19.6■□□□□ 0.73
VARS-225ENST00000482996 CCDC9Q9Y3X0 531 aaKnown RBP19.6■□□□□ 0.73
VARS-225ENST00000482996 PLCH1Q4KWH8 1693 aa19.59■□□□□ 0.73
VARS-225ENST00000482996 BTG4Q9NY30 223 aa19.59■□□□□ 0.73
VARS-225ENST00000482996 COL14A1Q05707 1796 aaKnown RBP19.58■□□□□ 0.73
VARS-225ENST00000482996 SLC24A1O60721 1099 aa19.58■□□□□ 0.72
VARS-225ENST00000482996 UPF1Q92900 1129 aaKnown RBP eCLIP19.58■□□□□ 0.72
VARS-225ENST00000482996 CRYBG1Q9Y4K1 1723 aa19.58■□□□□ 0.72
VARS-225ENST00000482996 CCER1Q8TC90 406 aaPredicted RBP19.57■□□□□ 0.72
VARS-225ENST00000482996 KIAA0232Q92628 1395 aa19.57■□□□□ 0.72
VARS-225ENST00000482996 USP19O94966 1318 aa19.56■□□□□ 0.72
VARS-225ENST00000482996 ST20-MTHFSA0A0A6YYL1 179 aa19.56■□□□□ 0.72
VARS-225ENST00000482996 ZC3H6P61129 1189 aaKnown RBP19.56■□□□□ 0.72
VARS-225ENST00000482996 PHRF1Q9P1Y6 1649 aaKnown RBP19.55■□□□□ 0.72
VARS-225ENST00000482996 NLRP6P59044 892 aa19.55■□□□□ 0.72
VARS-225ENST00000482996 PUS7Q96PZ0 661 aaKnown RBP19.55■□□□□ 0.72
VARS-225ENST00000482996 GLI3P10071 1580 aa19.54■□□□□ 0.72
VARS-225ENST00000482996 CHRNA2Q15822 529 aa19.54■□□□□ 0.72
VARS-225ENST00000482996 TMC1Q8TDI8 760 aa19.54■□□□□ 0.72
VARS-225ENST00000482996 TTC21BQ7Z4L5 1316 aa19.53■□□□□ 0.72
VARS-225ENST00000482996 SSH2Q76I76 1423 aa19.53■□□□□ 0.72
VARS-225ENST00000482996 GCP02774 474 aa19.53■□□□□ 0.72
VARS-225ENST00000482996 KTN1Q86UP2 1357 aaKnown RBP19.53■□□□□ 0.72
VARS-225ENST00000482996 TTC21AQ8NDW8 1320 aa19.52■□□□□ 0.72
VARS-225ENST00000482996 CPSF1Q10570 1443 aaKnown RBP19.52■□□□□ 0.72
VARS-225ENST00000482996 TESK2Q96S53 571 aa19.52■□□□□ 0.72
VARS-225ENST00000482996 CPDO75976 1380 aa19.52■□□□□ 0.72
VARS-225ENST00000482996 USP47Q96K76 1375 aa19.52■□□□□ 0.72
VARS-225ENST00000482996 NRAPQ86VF7 1730 aa19.51■□□□□ 0.71
VARS-225ENST00000482996 HDGFL2Q7Z4V5 671 aaPredicted RBP19.51■□□□□ 0.71
VARS-225ENST00000482996 SEPT12Q8IYM1 358 aa19.51■□□□□ 0.71
VARS-225ENST00000482996 NRKQ7Z2Y5 1582 aa19.51■□□□□ 0.71
VARS-225ENST00000482996 AKAP12Q02952 1782 aa19.5■□□□□ 0.71
VARS-225ENST00000482996 A0A0G2JS52 829 aa19.49■□□□□ 0.71
VARS-225ENST00000482996 ONECUT3O60422 494 aaPredicted RBP19.49■□□□□ 0.71
VARS-225ENST00000482996 MYT1Q01538 1121 aa19.49■□□□□ 0.71
VARS-225ENST00000482996 STRN4Q9NRL3 753 aa19.49■□□□□ 0.71
VARS-225ENST00000482996 TERF2IPQ9NYB0 399 aa19.49■□□□□ 0.71
VARS-225ENST00000482996 SPATA31A5Q5VU36 1347 aa19.49■□□□□ 0.71
VARS-225ENST00000482996 SPATA31A7Q8IWB4 1347 aa19.49■□□□□ 0.71
VARS-225ENST00000482996 EVA1CP58658 441 aa19.48■□□□□ 0.71
VARS-225ENST00000482996 SLC12A5Q9H2X9 1139 aa19.48■□□□□ 0.71
VARS-225ENST00000482996 NINLQ9Y2I6 1382 aa19.47■□□□□ 0.71
VARS-225ENST00000482996 TMF1P82094 1093 aa19.47■□□□□ 0.71
VARS-225ENST00000482996 FAM98CQ17RN3 349 aaKnown RBP19.47■□□□□ 0.71
VARS-225ENST00000482996 PIK3C2AO00443 1686 aa19.46■□□□□ 0.71
VARS-225ENST00000482996 ZBTB7CA1YPR0 619 aa19.46■□□□□ 0.71
VARS-225ENST00000482996 KCNH5Q8NCM2 988 aa19.46■□□□□ 0.71
VARS-225ENST00000482996 SLIT3O75094 1523 aa19.46■□□□□ 0.71
VARS-225ENST00000482996 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.45■□□□□ 0.7
VARS-225ENST00000482996 CD163L1Q9NR16 1453 aa19.44■□□□□ 0.7
VARS-225ENST00000482996 CDCA8Q53HL2 280 aa19.44■□□□□ 0.7
VARS-225ENST00000482996 MON2Q7Z3U7 1717 aa19.44■□□□□ 0.7
VARS-225ENST00000482996 SPATA31A1Q5TZJ5 1347 aa19.44■□□□□ 0.7
VARS-225ENST00000482996 KRT27Q7Z3Y8 459 aa19.43■□□□□ 0.7
VARS-225ENST00000482996 AATKQ6ZMQ8 1374 aa19.43■□□□□ 0.7
VARS-225ENST00000482996 CAMTA1Q9Y6Y1 1673 aa19.43■□□□□ 0.7
VARS-225ENST00000482996 EDC4Q6P2E9 1401 aaKnown RBP19.42■□□□□ 0.7
VARS-225ENST00000482996 CCDC125Q86Z20 511 aa19.42■□□□□ 0.7
VARS-225ENST00000482996 A0A1W2PP64 1363 aa19.42■□□□□ 0.7
VARS-225ENST00000482996 LMO7Q8WWI1 1683 aa19.41■□□□□ 0.7
VARS-225ENST00000482996 SOX12O15370 315 aa19.41■□□□□ 0.7
VARS-225ENST00000482996 EP400Q96L91 3159 aa19.41■□□□□ 0.7
VARS-225ENST00000482996 USP31Q70CQ4 1352 aa19.41■□□□□ 0.7
VARS-225ENST00000482996 LARP1Q6PKG0 1096 aaKnown RBP19.4■□□□□ 0.7
VARS-225ENST00000482996 NME9Q86XW9 330 aa19.4■□□□□ 0.7
VARS-225ENST00000482996 BRWD3Q6RI45 1802 aa19.39■□□□□ 0.7
VARS-225ENST00000482996 ARHGEF25Q86VW2 580 aa19.39■□□□□ 0.69
VARS-225ENST00000482996 USP35Q9P2H5 1018 aa19.39■□□□□ 0.69
VARS-225ENST00000482996 COL5A2P05997 1499 aaPredicted RBP19.38■□□□□ 0.69
VARS-225ENST00000482996 ZRANB1Q9UGI0 708 aa19.38■□□□□ 0.69
VARS-225ENST00000482996 BARGINQ6ZT62 677 aa19.37■□□□□ 0.69
VARS-225ENST00000482996 TCP11L2Q8N4U5 519 aa19.37■□□□□ 0.69
VARS-225ENST00000482996 ANKRD36BQ8N2N9 1353 aa19.36■□□□□ 0.69
VARS-225ENST00000482996 THRAP3Q9Y2W1 955 aaKnown RBP19.36■□□□□ 0.69
VARS-225ENST00000482996 SF3B2Q13435 895 aaKnown RBP19.35■□□□□ 0.69
VARS-225ENST00000482996 NFAT5O94916 1531 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms