RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 CDC42BPGQ6DT37 1551 aa6.27□□□□□ -1.41
VPS13D-208ENST00000481484 C3orf67Q6ZVT6 689 aa6.27□□□□□ -1.41
VPS13D-208ENST00000481484 MFRPQ9BY79 579 aa6.27□□□□□ -1.41
VPS13D-208ENST00000481484 TBX22Q9Y458 520 aa6.27□□□□□ -1.41
VPS13D-208ENST00000481484 ADGRL3Q9HAR2 1447 aa6.26□□□□□ -1.41
VPS13D-208ENST00000481484 ASXL1Q8IXJ9 1541 aa6.26□□□□□ -1.41
VPS13D-208ENST00000481484 LCE2DQ5TA82 110 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-208ENST00000481484 G3V3G9 751 aa6.25□□□□□ -1.41
VPS13D-208ENST00000481484 CADPS2Q86UW7 1296 aa6.25□□□□□ -1.41
VPS13D-208ENST00000481484 PROSER2Q86WR7 435 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-208ENST00000481484 HS6ST3Q8IZP7 471 aa6.25□□□□□ -1.41
VPS13D-208ENST00000481484 FAM163AQ96GL9 167 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-208ENST00000481484 SLC26A8Q96RN1 970 aa6.25□□□□□ -1.41
VPS13D-208ENST00000481484 JCADQ9P266 1359 aa6.25□□□□□ -1.41
VPS13D-208ENST00000481484 KIF1AQ12756 1690 aa6.24□□□□□ -1.41
VPS13D-208ENST00000481484 ILDR2Q71H61 639 aa6.24□□□□□ -1.41
VPS13D-208ENST00000481484 BCANQ96GW7 911 aa6.24□□□□□ -1.41
VPS13D-208ENST00000481484 CCDC144AA2RUR9 1427 aa6.24□□□□□ -1.41
VPS13D-208ENST00000481484 CHGAP10645 457 aaKnown RBP6.23□□□□□ -1.41
VPS13D-208ENST00000481484 MICALL2Q8IY33 904 aa6.23□□□□□ -1.41
VPS13D-208ENST00000481484 COL22A1Q8NFW1 1626 aaPredicted RBP6.23□□□□□ -1.41
VPS13D-208ENST00000481484 TECPR2O15040 1411 aa6.23□□□□□ -1.41
VPS13D-208ENST00000481484 MST1RQ04912 1400 aa6.23□□□□□ -1.41
VPS13D-208ENST00000481484 SPATA31A6Q5VVP1 1343 aa6.23□□□□□ -1.41
VPS13D-208ENST00000481484 RPGRIP1LQ68CZ1 1315 aa6.23□□□□□ -1.41
VPS13D-208ENST00000481484 MYOM2P54296 1465 aa6.22□□□□□ -1.41
VPS13D-208ENST00000481484 SNPHO15079 494 aa6.22□□□□□ -1.41
VPS13D-208ENST00000481484 PTPRUQ92729 1446 aa6.22□□□□□ -1.41
VPS13D-208ENST00000481484 MARF1Q9Y4F3 1742 aaKnown RBP6.22□□□□□ -1.41
VPS13D-208ENST00000481484 ANKRD30BQ9BXX2 1392 aa6.21□□□□□ -1.41
VPS13D-208ENST00000481484 ATF3P18847 181 aa6.21□□□□□ -1.42
VPS13D-208ENST00000481484 ITGAEP38570 1179 aa6.21□□□□□ -1.42
VPS13D-208ENST00000481484 ZNF326Q5BKZ1 582 aaKnown RBP6.21□□□□□ -1.42
VPS13D-208ENST00000481484 C14orf37Q86TY3 774 aa6.21□□□□□ -1.42
VPS13D-208ENST00000481484 C19orf44Q9H6X5 657 aa6.21□□□□□ -1.42
VPS13D-208ENST00000481484 SLAIN2Q9P270 581 aa6.21□□□□□ -1.42
VPS13D-208ENST00000481484 SETD5Q9C0A6 1442 aa6.21□□□□□ -1.42
VPS13D-208ENST00000481484 FMN2Q9NZ56 1722 aa6.21□□□□□ -1.42
VPS13D-208ENST00000481484 CDK12Q9NYV4 1490 aaPredicted RBP6.21□□□□□ -1.42
VPS13D-208ENST00000481484 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.2□□□□□ -1.42
VPS13D-208ENST00000481484 ADGRB2O60241 1585 aa6.2□□□□□ -1.42
VPS13D-208ENST00000481484 PIK3C2GO75747 1445 aa6.2□□□□□ -1.42
VPS13D-208ENST00000481484 SPATA31E1Q6ZUB1 1445 aa6.2□□□□□ -1.42
VPS13D-208ENST00000481484 POTEMA6NI47 508 aa6.2□□□□□ -1.42
VPS13D-208ENST00000481484 ST18O60284 1047 aa6.2□□□□□ -1.42
VPS13D-208ENST00000481484 POTEGQ6S5H5 508 aa6.2□□□□□ -1.42
VPS13D-208ENST00000481484 LRP6O75581 1613 aa6.2□□□□□ -1.42
VPS13D-208ENST00000481484 TMEM92Q6UXU6 159 aa6.19□□□□□ -1.42
VPS13D-208ENST00000481484 AMOTL2Q9Y2J4 779 aa6.19□□□□□ -1.42
VPS13D-208ENST00000481484 NRXN1Q9ULB1 1477 aa6.19□□□□□ -1.42
VPS13D-208ENST00000481484 ITSN1Q15811 1721 aa6.19□□□□□ -1.42
VPS13D-208ENST00000481484 METP08581 1390 aa6.18□□□□□ -1.42
VPS13D-208ENST00000481484 C1orf167Q5SNV9 1468 aa6.18□□□□□ -1.42
VPS13D-208ENST00000481484 NKX1-1Q15270 411 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-208ENST00000481484 DLC1Q96QB1 1528 aa6.18□□□□□ -1.42
VPS13D-208ENST00000481484 ABCA3Q99758 1704 aa6.17□□□□□ -1.42
VPS13D-208ENST00000481484 KIAA1210Q9ULL0 1709 aa6.17□□□□□ -1.42
VPS13D-208ENST00000481484 PPP1R37O75864 691 aa6.17□□□□□ -1.42
VPS13D-208ENST00000481484 TRIM52Q96A61 297 aa6.17□□□□□ -1.42
VPS13D-208ENST00000481484 EP400Q96L91 3159 aa6.16□□□□□ -1.42
VPS13D-208ENST00000481484 ZNF772Q68DY9 489 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-208ENST00000481484 BRINP3Q76B58 766 aa6.16□□□□□ -1.42
VPS13D-208ENST00000481484 LRPPRCP42704 1394 aaKnown RBP6.16□□□□□ -1.42
VPS13D-208ENST00000481484 EIF3AQ14152 1382 aaKnown RBP6.16□□□□□ -1.42
VPS13D-208ENST00000481484 PNPLA6Q8IY17 1366 aa6.16□□□□□ -1.42
VPS13D-208ENST00000481484 ROBO2Q9HCK4 1378 aa6.16□□□□□ -1.42
VPS13D-208ENST00000481484 NWD2Q9ULI1 1742 aa6.16□□□□□ -1.42
VPS13D-208ENST00000481484 USP32Q8NFA0 1604 aa6.15□□□□□ -1.42
VPS13D-208ENST00000481484 HOXB3P14651 431 aaPredicted RBP6.15□□□□□ -1.42
VPS13D-208ENST00000481484 AMER1Q5JTC6 1135 aaPredicted RBP6.15□□□□□ -1.42
VPS13D-208ENST00000481484 NUTM2DQ5VT03 806 aaPredicted RBP6.15□□□□□ -1.42
VPS13D-208ENST00000481484 PCDH10Q9P2E7 1040 aa6.15□□□□□ -1.42
VPS13D-208ENST00000481484 ARHGEF28Q8N1W1 1705 aaKnown RBP6.15□□□□□ -1.42
VPS13D-208ENST00000481484 YTHDC2Q9H6S0 1430 aaKnown RBP6.15□□□□□ -1.43
VPS13D-208ENST00000481484 PXDNQ92626 1479 aa6.15□□□□□ -1.43
VPS13D-208ENST00000481484 KIF3CO14782 793 aa6.14□□□□□ -1.43
VPS13D-208ENST00000481484 MEX3CQ5U5Q3 659 aaKnown RBP6.14□□□□□ -1.43
VPS13D-208ENST00000481484 LRRC59Q96AG4 307 aaKnown RBP6.14□□□□□ -1.43
VPS13D-208ENST00000481484 RBM33Q96EV2 1170 aaKnown RBP6.14□□□□□ -1.43
VPS13D-208ENST00000481484 NPHP3Q7Z494 1330 aa6.14□□□□□ -1.43
VPS13D-208ENST00000481484 ABCC11Q96J66 1382 aa6.14□□□□□ -1.43
VPS13D-208ENST00000481484 ANKARQ7Z5J8 1434 aa6.14□□□□□ -1.43
VPS13D-208ENST00000481484 ADGRB1O14514 1584 aa6.14□□□□□ -1.43
VPS13D-208ENST00000481484 PLCH1Q4KWH8 1693 aa6.14□□□□□ -1.43
VPS13D-208ENST00000481484 PPARGC1BQ86YN6 1023 aaKnown RBP6.13□□□□□ -1.43
VPS13D-208ENST00000481484 RYDENQ9NUL5 291 aaKnown RBP6.13□□□□□ -1.43
VPS13D-208ENST00000481484 RGS17Q9UGC6 210 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-208ENST00000481484 RAB3GAP2Q9H2M9 1393 aa6.13□□□□□ -1.43
VPS13D-208ENST00000481484 TOPAZ1Q8N9V7 1692 aa6.13□□□□□ -1.43
VPS13D-208ENST00000481484 RGPD8O14715 1765 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-208ENST00000481484 SOS2Q07890 1332 aaPredicted RBP6.12□□□□□ -1.43
VPS13D-208ENST00000481484 DOK7Q18PE1 504 aa6.12□□□□□ -1.43
VPS13D-208ENST00000481484 STAC3Q96MF2 364 aa6.12□□□□□ -1.43
VPS13D-208ENST00000481484 MPHOSPH9Q99550 1183 aa6.12□□□□□ -1.43
VPS13D-208ENST00000481484 TRPM3Q9HCF6 1732 aaPredicted RBP6.12□□□□□ -1.43
VPS13D-208ENST00000481484 RTN4Q9NQC3 1192 aaKnown RBP6.12□□□□□ -1.43
VPS13D-208ENST00000481484 TULP4Q9NRJ4 1543 aa6.12□□□□□ -1.43
VPS13D-208ENST00000481484 CRYBG1Q9Y4K1 1723 aa6.11□□□□□ -1.43
VPS13D-208ENST00000481484 ALS2Q96Q42 1657 aa6.11□□□□□ -1.43
VPS13D-208ENST00000481484 TNS3Q68CZ2 1445 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms