RNA–Protein interactions for RNA: ENST00000480923.5

VPS36-204, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 3

Gene VPS36, Length 614 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-204ENST00000480923 TRPC5Q9UL62 973 aaPredicted RBP28.52■■■□□ 2.16
VPS36-204ENST00000480923 RBM6P78332 1123 aaKnown RBP28.51■■■□□ 2.15
VPS36-204ENST00000480923 TIMELESSQ9UNS1 1208 aa28.51■■■□□ 2.15
VPS36-204ENST00000480923 MARF1Q9Y4F3 1742 aaKnown RBP28.51■■■□□ 2.15
VPS36-204ENST00000480923 SBNO2Q9Y2G9 1366 aa28.5■■■□□ 2.15
VPS36-204ENST00000480923 BCL9LQ86UU0 1499 aa28.47■■■□□ 2.15
VPS36-204ENST00000480923 ABCA3Q99758 1704 aa28.47■■■□□ 2.15
VPS36-204ENST00000480923 NUTM2GQ5VZR2 741 aa28.47■■■□□ 2.15
VPS36-204ENST00000480923 ATAD2Q6PL18 1390 aa28.47■■■□□ 2.15
VPS36-204ENST00000480923 ATRNO75882 1429 aa28.46■■■□□ 2.15
VPS36-204ENST00000480923 SLIT2O94813 1529 aa28.45■■■□□ 2.15
VPS36-204ENST00000480923 CDK12Q9NYV4 1490 aaPredicted RBP28.45■■■□□ 2.14
VPS36-204ENST00000480923 UNC5CLQ8IV45 518 aa28.44■■■□□ 2.14
VPS36-204ENST00000480923 ABTB2Q8N961 1025 aa28.44■■■□□ 2.14
VPS36-204ENST00000480923 ST20-MTHFSA0A0A6YYL1 179 aa28.43■■■□□ 2.14
VPS36-204ENST00000480923 FAM83GA6ND36 823 aa28.42■■■□□ 2.14
VPS36-204ENST00000480923 USP6P35125 1406 aa28.42■■■□□ 2.14
VPS36-204ENST00000480923 BRD4O60885 1362 aaPredicted RBP28.41■■■□□ 2.14
VPS36-204ENST00000480923 RGS12O14924 1447 aa28.4■■■□□ 2.14
VPS36-204ENST00000480923 ZNF692Q9BU19 519 aaPredicted RBP28.38■■■□□ 2.13
VPS36-204ENST00000480923 NLRP13Q86W25 1043 aa28.37■■■□□ 2.13
VPS36-204ENST00000480923 GJD4Q96KN9 370 aaPredicted RBP28.37■■■□□ 2.13
VPS36-204ENST00000480923 TESK2Q96S53 571 aa28.37■■■□□ 2.13
VPS36-204ENST00000480923 PRDM11Q9NQV5 511 aa28.37■■■□□ 2.13
VPS36-204ENST00000480923 USP47Q96K76 1375 aa28.37■■■□□ 2.13
VPS36-204ENST00000480923 CRYBG1Q9Y4K1 1723 aa28.36■■■□□ 2.13
VPS36-204ENST00000480923 TMC1Q8TDI8 760 aa28.36■■■□□ 2.13
VPS36-204ENST00000480923 BTG4Q9NY30 223 aa28.35■■■□□ 2.13
VPS36-204ENST00000480923 PLCH1Q4KWH8 1693 aa28.35■■■□□ 2.13
VPS36-204ENST00000480923 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.35■■■□□ 2.13
VPS36-204ENST00000480923 SLC24A1O60721 1099 aa28.34■■■□□ 2.13
VPS36-204ENST00000480923 ZC3H6P61129 1189 aaKnown RBP28.34■■■□□ 2.13
VPS36-204ENST00000480923 CCDC9Q9Y3X0 531 aaKnown RBP28.34■■■□□ 2.13
VPS36-204ENST00000480923 USP19O94966 1318 aa28.33■■■□□ 2.13
VPS36-204ENST00000480923 KIAA0232Q92628 1395 aa28.33■■■□□ 2.13
VPS36-204ENST00000480923 PHRF1Q9P1Y6 1649 aaKnown RBP28.32■■■□□ 2.12
VPS36-204ENST00000480923 NLRP6P59044 892 aa28.32■■■□□ 2.12
VPS36-204ENST00000480923 VPS72Q15906 364 aa28.32■■■□□ 2.12
VPS36-204ENST00000480923 KTN1Q86UP2 1357 aaKnown RBP28.32■■■□□ 2.12
VPS36-204ENST00000480923 CPSF1Q10570 1443 aaKnown RBP28.32■■■□□ 2.12
VPS36-204ENST00000480923 SSH2Q76I76 1423 aa28.32■■■□□ 2.12
VPS36-204ENST00000480923 PUS7Q96PZ0 661 aaKnown RBP28.31■■■□□ 2.12
VPS36-204ENST00000480923 TTC21BQ7Z4L5 1316 aa28.31■■■□□ 2.12
VPS36-204ENST00000480923 NWD2Q9ULI1 1742 aa28.31■■■□□ 2.12
VPS36-204ENST00000480923 COL14A1Q05707 1796 aaKnown RBP28.31■■■□□ 2.12
VPS36-204ENST00000480923 CHRNA2Q15822 529 aa28.3■■■□□ 2.12
VPS36-204ENST00000480923 SLC12A5Q9H2X9 1139 aa28.29■■■□□ 2.12
VPS36-204ENST00000480923 GCP02774 474 aa28.28■■■□□ 2.12
VPS36-204ENST00000480923 HDGFL2Q7Z4V5 671 aaPredicted RBP28.28■■■□□ 2.12
VPS36-204ENST00000480923 TTC21AQ8NDW8 1320 aa28.27■■■□□ 2.12
VPS36-204ENST00000480923 NRKQ7Z2Y5 1582 aa28.27■■■□□ 2.12
VPS36-204ENST00000480923 AKAP12Q02952 1782 aa28.27■■■□□ 2.12
VPS36-204ENST00000480923 GLI3P10071 1580 aa28.26■■■□□ 2.11
VPS36-204ENST00000480923 TMF1P82094 1093 aa28.26■■■□□ 2.11
VPS36-204ENST00000480923 TERF2IPQ9NYB0 399 aa28.24■■■□□ 2.11
VPS36-204ENST00000480923 CD163L1Q9NR16 1453 aa28.23■■■□□ 2.11
VPS36-204ENST00000480923 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.23■■■□□ 2.11
VPS36-204ENST00000480923 UPF1Q92900 1129 aaKnown RBP eCLIP28.23■■■□□ 2.11
VPS36-204ENST00000480923 NRAPQ86VF7 1730 aa28.23■■■□□ 2.11
VPS36-204ENST00000480923 CPDO75976 1380 aa28.23■■■□□ 2.11
VPS36-204ENST00000480923 PIK3C2AO00443 1686 aa28.23■■■□□ 2.11
VPS36-204ENST00000480923 ZBTB7CA1YPR0 619 aa28.22■■■□□ 2.11
VPS36-204ENST00000480923 STRN4Q9NRL3 753 aa28.21■■■□□ 2.11
VPS36-204ENST00000480923 NINLQ9Y2I6 1382 aa28.21■■■□□ 2.11
VPS36-204ENST00000480923 A0A1W2PP64 1363 aa28.2■■■□□ 2.1
VPS36-204ENST00000480923 SLIT3O75094 1523 aa28.19■■■□□ 2.1
VPS36-204ENST00000480923 MON2Q7Z3U7 1717 aa28.19■■■□□ 2.1
VPS36-204ENST00000480923 EVA1CP58658 441 aa28.18■■■□□ 2.1
VPS36-204ENST00000480923 SEPT12Q8IYM1 358 aa28.18■■■□□ 2.1
VPS36-204ENST00000480923 A0A0G2JS52 829 aa28.17■■■□□ 2.1
VPS36-204ENST00000480923 SOX12O15370 315 aa28.17■■■□□ 2.1
VPS36-204ENST00000480923 MYT1Q01538 1121 aa28.17■■■□□ 2.1
VPS36-204ENST00000480923 CDCA8Q53HL2 280 aa28.17■■■□□ 2.1
VPS36-204ENST00000480923 EDC4Q6P2E9 1401 aaKnown RBP28.17■■■□□ 2.1
VPS36-204ENST00000480923 SPATA31A5Q5VU36 1347 aa28.17■■■□□ 2.1
VPS36-204ENST00000480923 SPATA31A7Q8IWB4 1347 aa28.17■■■□□ 2.1
VPS36-204ENST00000480923 FAM98CQ17RN3 349 aaKnown RBP28.16■■■□□ 2.1
VPS36-204ENST00000480923 NME9Q86XW9 330 aa28.16■■■□□ 2.1
VPS36-204ENST00000480923 KCNH5Q8NCM2 988 aa28.16■■■□□ 2.1
VPS36-204ENST00000480923 ZRANB1Q9UGI0 708 aa28.15■■■□□ 2.1
VPS36-204ENST00000480923 ONECUT3O60422 494 aaPredicted RBP28.14■■■□□ 2.1
VPS36-204ENST00000480923 CAMTA1Q9Y6Y1 1673 aa28.13■■■□□ 2.09
VPS36-204ENST00000480923 USP31Q70CQ4 1352 aa28.11■■■□□ 2.09
VPS36-204ENST00000480923 EIF4G2P78344 907 aaKnown RBP eCLIP28.11■■■□□ 2.09
VPS36-204ENST00000480923 SPATA31A1Q5TZJ5 1347 aa28.11■■■□□ 2.09
VPS36-204ENST00000480923 AATKQ6ZMQ8 1374 aa28.11■■■□□ 2.09
VPS36-204ENST00000480923 LMO7Q8WWI1 1683 aa28.1■■■□□ 2.09
VPS36-204ENST00000480923 LARP1Q6PKG0 1096 aaKnown RBP28.09■■■□□ 2.09
VPS36-204ENST00000480923 USP35Q9P2H5 1018 aa28.09■■■□□ 2.09
VPS36-204ENST00000480923 ANKRD36BQ8N2N9 1353 aa28.09■■■□□ 2.09
VPS36-204ENST00000480923 ARHGEF25Q86VW2 580 aa28.08■■■□□ 2.09
VPS36-204ENST00000480923 HSPA5P11021 654 aaKnown RBP28.07■■■□□ 2.08
VPS36-204ENST00000480923 KRT27Q7Z3Y8 459 aa28.07■■■□□ 2.08
VPS36-204ENST00000480923 COL5A2P05997 1499 aaPredicted RBP28.06■■■□□ 2.08
VPS36-204ENST00000480923 NFAT5O94916 1531 aa28.04■■■□□ 2.08
VPS36-204ENST00000480923 AXIN2Q9Y2T1 843 aa28.03■■■□□ 2.08
VPS36-204ENST00000480923 POLR3GLQ9BT43 218 aa28.02■■■□□ 2.08
VPS36-204ENST00000480923 OVOS2A0A0J9YW53 1432 aa28.01■■■□□ 2.08
VPS36-204ENST00000480923 OVOS2Q6IE36 1432 aa28.01■■■□□ 2.08
VPS36-204ENST00000480923 USP54Q70EL1 1684 aa28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms