RNA–Protein interactions for RNA: ENST00000480022.1

CHD6-208, Transcript of chromodomain helicase DNA binding protein 6, human

TSL 2

Gene CHD6, Length 2,829 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD6-208	ENST00000480022	DIP2A	Q14689	1571 aa		13.88	□□□□□ -0.19
CHD6-208	ENST00000480022	RGS3	P49796	1198 aa		13.88	□□□□□ -0.19
CHD6-208	ENST00000480022	RALBP1	Q15311	655 aa		13.88	□□□□□ -0.19
CHD6-208	ENST00000480022	LAMC1	P11047	1609 aa		13.87	□□□□□ -0.19
CHD6-208	ENST00000480022	GPRASP1	Q5JY77	1395 aa		13.87	□□□□□ -0.19
CHD6-208	ENST00000480022	SETD1A	O15047	1707 aa	Known RBP	13.87	□□□□□ -0.19
CHD6-208	ENST00000480022	MYH16	Q9H6N6	1097 aa		13.87	□□□□□ -0.19
CHD6-208	ENST00000480022	DMRT2	Q9Y5R5	561 aa		13.87	□□□□□ -0.19
CHD6-208	ENST00000480022	KIAA1210	Q9ULL0	1709 aa		13.87	□□□□□ -0.19
CHD6-208	ENST00000480022	ANTXR1	Q9H6X2	564 aa		13.86	□□□□□ -0.19
CHD6-208	ENST00000480022	USP47	Q96K76	1375 aa		13.86	□□□□□ -0.19
CHD6-208	ENST00000480022	C20orf194	Q5TEA3	1177 aa		13.86	□□□□□ -0.19
CHD6-208	ENST00000480022	DHX37	Q8IY37	1157 aa	Known RBP	13.86	□□□□□ -0.19
CHD6-208	ENST00000480022	CARD11	Q9BXL7	1154 aa		13.86	□□□□□ -0.19
CHD6-208	ENST00000480022	USP19	O94966	1318 aa		13.86	□□□□□ -0.19
CHD6-208	ENST00000480022	VIRMA	Q69YN4	1812 aa	Known RBP	13.86	□□□□□ -0.19
CHD6-208	ENST00000480022	HAP1	P54257	671 aa	Predicted RBP	13.86	□□□□□ -0.19
CHD6-208	ENST00000480022	PTPRU	Q92729	1446 aa		13.85	□□□□□ -0.19
CHD6-208	ENST00000480022	ERBB4	Q15303	1308 aa		13.85	□□□□□ -0.19
CHD6-208	ENST00000480022	PIK3R4	Q99570	1358 aa		13.84	□□□□□ -0.19
CHD6-208	ENST00000480022	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.84	□□□□□ -0.19
CHD6-208	ENST00000480022	GZF1	Q9H116	711 aa	Predicted RBP	13.84	□□□□□ -0.19
CHD6-208	ENST00000480022	STK26	Q9P289	416 aa		13.84	□□□□□ -0.19
CHD6-208	ENST00000480022	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.84	□□□□□ -0.19
CHD6-208	ENST00000480022	TRIM44	Q96DX7	344 aa	Predicted RBP	13.83	□□□□□ -0.2
CHD6-208	ENST00000480022	TRAK1	Q9UPV9	953 aa		13.83	□□□□□ -0.2
CHD6-208	ENST00000480022	AMOTL2	Q9Y2J4	779 aa		13.83	□□□□□ -0.2
CHD6-208	ENST00000480022	MCM4	P33991	863 aa		13.82	□□□□□ -0.2
CHD6-208	ENST00000480022	ABCC11	Q96J66	1382 aa		13.82	□□□□□ -0.2
CHD6-208	ENST00000480022	GRPEL1	Q9HAV7	217 aa		13.82	□□□□□ -0.2
CHD6-208	ENST00000480022	KCNA6	P17658	529 aa		13.81	□□□□□ -0.2
CHD6-208	ENST00000480022	KIAA1211	Q6ZU35	1233 aa		13.81	□□□□□ -0.2
CHD6-208	ENST00000480022	NLRP13	Q86W25	1043 aa		13.81	□□□□□ -0.2
CHD6-208	ENST00000480022	ISY1	Q9ULR0	285 aa	Known RBP	13.81	□□□□□ -0.2
CHD6-208	ENST00000480022	TECPR2	O15040	1411 aa		13.8	□□□□□ -0.2
CHD6-208	ENST00000480022	MAP7D2	Q96T17	732 aa		13.8	□□□□□ -0.2
CHD6-208	ENST00000480022	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.79	□□□□□ -0.2
CHD6-208	ENST00000480022	ROBO2	Q9HCK4	1378 aa		13.79	□□□□□ -0.2
CHD6-208	ENST00000480022	TRAK2	O60296	914 aa		13.79	□□□□□ -0.2
CHD6-208	ENST00000480022	NWD1	Q149M9	1564 aa		13.78	□□□□□ -0.2
CHD6-208	ENST00000480022	XRN1	Q8IZH2	1706 aa	Known RBP	13.78	□□□□□ -0.2
CHD6-208	ENST00000480022	PRAM1	Q96QH2	718 aa		13.77	□□□□□ -0.2
CHD6-208	ENST00000480022	DLC1	Q96QB1	1528 aa		13.77	□□□□□ -0.2
CHD6-208	ENST00000480022	PTCH1	Q13635	1447 aa		13.77	□□□□□ -0.21
CHD6-208	ENST00000480022	WAPL	Q7Z5K2	1190 aa		13.77	□□□□□ -0.21
CHD6-208	ENST00000480022	SIRT1	Q96EB6	747 aa		13.77	□□□□□ -0.21
CHD6-208	ENST00000480022	INSR	P06213	1382 aa		13.77	□□□□□ -0.21
CHD6-208	ENST00000480022	CHD2	O14647	1828 aa	Known RBP	13.77	□□□□□ -0.21
CHD6-208	ENST00000480022	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.77	□□□□□ -0.21
CHD6-208	ENST00000480022	CPS1	P31327	1500 aa		13.77	□□□□□ -0.21
CHD6-208	ENST00000480022	PLEKHH1	Q9ULM0	1364 aa		13.76	□□□□□ -0.21
CHD6-208	ENST00000480022	SEC24B	O95487	1268 aa		13.76	□□□□□ -0.21
CHD6-208	ENST00000480022	EIF3A	Q14152	1382 aa	Known RBP	13.76	□□□□□ -0.21
CHD6-208	ENST00000480022	FAM135B	Q49AJ0	1406 aa		13.76	□□□□□ -0.21
CHD6-208	ENST00000480022	ST20-MTHFS	A0A0A6YYL1	179 aa		13.76	□□□□□ -0.21
CHD6-208	ENST00000480022	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.76	□□□□□ -0.21
CHD6-208	ENST00000480022	BLM	P54132	1417 aa	Predicted RBP	13.75	□□□□□ -0.21
CHD6-208	ENST00000480022	KNDC1	Q76NI1	1749 aa		13.75	□□□□□ -0.21
CHD6-208	ENST00000480022	NKTR	P30414	1462 aa	Known RBP	13.75	□□□□□ -0.21
CHD6-208	ENST00000480022	TERF1	P54274	439 aa		13.75	□□□□□ -0.21
CHD6-208	ENST00000480022	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
CHD6-208	ENST00000480022	TBC1D2	Q9BYX2	928 aa		13.75	□□□□□ -0.21
CHD6-208	ENST00000480022	RBM33	Q96EV2	1170 aa	Known RBP	13.74	□□□□□ -0.21
CHD6-208	ENST00000480022	STRCP1	A6NGW2	1772 aa		13.74	□□□□□ -0.21
CHD6-208	ENST00000480022	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.74	□□□□□ -0.21
CHD6-208	ENST00000480022	PARD3	Q8TEW0	1356 aa		13.74	□□□□□ -0.21
CHD6-208	ENST00000480022	PROSER2	Q86WR7	435 aa	Predicted RBP	13.73	□□□□□ -0.21
CHD6-208	ENST00000480022	CNKSR2	Q8WXI2	1034 aa		13.73	□□□□□ -0.21
CHD6-208	ENST00000480022	OFD1	O75665	1012 aa		13.73	□□□□□ -0.21
CHD6-208	ENST00000480022	RIPK4	P57078	832 aa		13.73	□□□□□ -0.21
CHD6-208	ENST00000480022	UPF2	Q9HAU5	1272 aa	Known RBP	13.73	□□□□□ -0.21
CHD6-208	ENST00000480022	MAPK8IP3	Q9UPT6	1336 aa		13.72	□□□□□ -0.21
CHD6-208	ENST00000480022	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.72	□□□□□ -0.21
CHD6-208	ENST00000480022	TESK2	Q96S53	571 aa		13.72	□□□□□ -0.21
CHD6-208	ENST00000480022	CHMP5	Q9NZZ3	219 aa		13.72	□□□□□ -0.21
CHD6-208	ENST00000480022	DDX11L8	A8MPP1	907 aa		13.71	□□□□□ -0.21
CHD6-208	ENST00000480022	TMEM94	Q12767	1356 aa		13.71	□□□□□ -0.22
CHD6-208	ENST00000480022	FAM13B	Q9NYF5	915 aa		13.7	□□□□□ -0.22
CHD6-208	ENST00000480022	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.7	□□□□□ -0.22
CHD6-208	ENST00000480022	LRRC7	Q96NW7	1537 aa		13.7	□□□□□ -0.22
CHD6-208	ENST00000480022	LTBP4	Q8N2S1	1624 aa		13.7	□□□□□ -0.22
CHD6-208	ENST00000480022	TBC1D32	Q96NH3	1257 aa		13.7	□□□□□ -0.22
CHD6-208	ENST00000480022	ZSCAN30	Q86W11	494 aa		13.69	□□□□□ -0.22
CHD6-208	ENST00000480022	SBNO2	Q9Y2G9	1366 aa		13.69	□□□□□ -0.22
CHD6-208	ENST00000480022	MTERF4	Q7Z6M4	381 aa	Known RBP	13.68	□□□□□ -0.22
CHD6-208	ENST00000480022	SPRYD3	Q8NCJ5	442 aa		13.68	□□□□□ -0.22
CHD6-208	ENST00000480022	DUSP27	Q5VZP5	1158 aa		13.68	□□□□□ -0.22
CHD6-208	ENST00000480022	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.67	□□□□□ -0.22
CHD6-208	ENST00000480022	NCOA3	Q9Y6Q9	1424 aa		13.67	□□□□□ -0.22
CHD6-208	ENST00000480022	QRICH2	Q9H0J4	1663 aa		13.67	□□□□□ -0.22
CHD6-208	ENST00000480022	CCDC173	Q0VFZ6	552 aa		13.67	□□□□□ -0.22
CHD6-208	ENST00000480022	CDK11B	P21127	795 aa	Known RBP	13.67	□□□□□ -0.22
CHD6-208	ENST00000480022	ADGRL3	Q9HAR2	1447 aa		13.67	□□□□□ -0.22
CHD6-208	ENST00000480022	IGHD	P01880	384 aa		13.66	□□□□□ -0.22
CHD6-208	ENST00000480022	MSN	P26038	577 aa	Known RBP	13.66	□□□□□ -0.22
CHD6-208	ENST00000480022	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.65	□□□□□ -0.22
CHD6-208	ENST00000480022	DISP3	Q9P2K9	1392 aa		13.65	□□□□□ -0.22
CHD6-208	ENST00000480022	UTP14C	Q5TAP6	766 aa	Known RBP	13.65	□□□□□ -0.22
CHD6-208	ENST00000480022	GAS2L3	Q86XJ1	694 aa		13.65	□□□□□ -0.22
CHD6-208	ENST00000480022	PPP1R9B	Q96SB3	815 aa		13.65	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 457.7 ms