RNA–Protein interactions for RNA: ENST00000479295.1

PTPN18-210, Transcript of protein tyrosine phosphatase, non-receptor type 18, human

TSL 3

Gene PTPN18, Length 513 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN18-210	ENST00000479295	USP47	Q96K76	1375 aa		13.76	□□□□□ -0.21
PTPN18-210	ENST00000479295	AFF2	P51816	1311 aa		13.76	□□□□□ -0.21
PTPN18-210	ENST00000479295	MEX3C	Q5U5Q3	659 aa	Known RBP	13.76	□□□□□ -0.21
PTPN18-210	ENST00000479295	SLIT2	O94813	1529 aa		13.75	□□□□□ -0.21
PTPN18-210	ENST00000479295	BCL9L	Q86UU0	1499 aa		13.74	□□□□□ -0.21
PTPN18-210	ENST00000479295	CD163L1	Q9NR16	1453 aa		13.74	□□□□□ -0.21
PTPN18-210	ENST00000479295	AKAP12	Q02952	1782 aa		13.74	□□□□□ -0.21
PTPN18-210	ENST00000479295	ADAMTS2	O95450	1211 aa		13.74	□□□□□ -0.21
PTPN18-210	ENST00000479295	ZNF692	Q9BU19	519 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN18-210	ENST00000479295	C8orf37	Q96NL8	207 aa		13.73	□□□□□ -0.21
PTPN18-210	ENST00000479295	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN18-210	ENST00000479295	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.73	□□□□□ -0.21
PTPN18-210	ENST00000479295	USP19	O94966	1318 aa		13.72	□□□□□ -0.21
PTPN18-210	ENST00000479295	NRK	Q7Z2Y5	1582 aa		13.72	□□□□□ -0.21
PTPN18-210	ENST00000479295	CABLES1	Q8TDN4	633 aa		13.72	□□□□□ -0.21
PTPN18-210	ENST00000479295	NGLY1	Q96IV0	654 aa		13.72	□□□□□ -0.21
PTPN18-210	ENST00000479295	ATRN	O75882	1429 aa		13.72	□□□□□ -0.21
PTPN18-210	ENST00000479295	NINL	Q9Y2I6	1382 aa		13.71	□□□□□ -0.21
PTPN18-210	ENST00000479295	MON2	Q7Z3U7	1717 aa		13.71	□□□□□ -0.21
PTPN18-210	ENST00000479295	SOCS7	O14512	581 aa		13.71	□□□□□ -0.21
PTPN18-210	ENST00000479295	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.71	□□□□□ -0.22
PTPN18-210	ENST00000479295	NWD2	Q9ULI1	1742 aa		13.7	□□□□□ -0.22
PTPN18-210	ENST00000479295	USP21	Q9UK80	565 aa		13.7	□□□□□ -0.22
PTPN18-210	ENST00000479295	PAK3	O75914	559 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPN18-210	ENST00000479295	SLIT3	O75094	1523 aa		13.69	□□□□□ -0.22
PTPN18-210	ENST00000479295	PIK3C2A	O00443	1686 aa		13.69	□□□□□ -0.22
PTPN18-210	ENST00000479295	USP54	Q70EL1	1684 aa		13.69	□□□□□ -0.22
PTPN18-210	ENST00000479295	TTC21B	Q7Z4L5	1316 aa		13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	TTC21A	Q8NDW8	1320 aa		13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	FAM83G	A6ND36	823 aa		13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	RBM6	P78332	1123 aa	Known RBP	13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	TMF1	P82094	1093 aa		13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	LMOD2	Q6P5Q4	547 aa		13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	ABTB2	Q8N961	1025 aa		13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	SLC12A5	Q9H2X9	1139 aa		13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	QTRT2	Q9H974	415 aa	Known RBP	13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	TRPC5	Q9UL62	973 aa	Predicted RBP	13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	CPD	O75976	1380 aa		13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	USP31	Q70CQ4	1352 aa		13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	COL14A1	Q05707	1796 aa	Known RBP	13.68	□□□□□ -0.22
PTPN18-210	ENST00000479295	PLCH1	Q4KWH8	1693 aa		13.67	□□□□□ -0.22
PTPN18-210	ENST00000479295	RXRB	P28702	533 aa		13.67	□□□□□ -0.22
PTPN18-210	ENST00000479295	NLRP13	Q86W25	1043 aa		13.67	□□□□□ -0.22
PTPN18-210	ENST00000479295	UNC5CL	Q8IV45	518 aa		13.67	□□□□□ -0.22
PTPN18-210	ENST00000479295	KTN1	Q86UP2	1357 aa	Known RBP	13.67	□□□□□ -0.22
PTPN18-210	ENST00000479295	NRAP	Q86VF7	1730 aa		13.67	□□□□□ -0.22
PTPN18-210	ENST00000479295		A0A1W2PP64	1363 aa		13.66	□□□□□ -0.22
PTPN18-210	ENST00000479295	EDC4	Q6P2E9	1401 aa	Known RBP	13.65	□□□□□ -0.22
PTPN18-210	ENST00000479295	CDCA8	Q53HL2	280 aa		13.65	□□□□□ -0.22
PTPN18-210	ENST00000479295	LMO7	Q8WWI1	1683 aa		13.64	□□□□□ -0.23
PTPN18-210	ENST00000479295	ANKRD36B	Q8N2N9	1353 aa		13.64	□□□□□ -0.23
PTPN18-210	ENST00000479295	KIAA0232	Q92628	1395 aa		13.64	□□□□□ -0.23
PTPN18-210	ENST00000479295	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
PTPN18-210	ENST00000479295	VPS72	Q15906	364 aa		13.64	□□□□□ -0.23
PTPN18-210	ENST00000479295	TERF2IP	Q9NYB0	399 aa		13.64	□□□□□ -0.23
PTPN18-210	ENST00000479295	GLI3	P10071	1580 aa		13.63	□□□□□ -0.23
PTPN18-210	ENST00000479295	ONECUT3	O60422	494 aa	Predicted RBP	13.63	□□□□□ -0.23
PTPN18-210	ENST00000479295	GC	P02774	474 aa		13.63	□□□□□ -0.23
PTPN18-210	ENST00000479295	HAP1	P54257	671 aa	Predicted RBP	13.63	□□□□□ -0.23
PTPN18-210	ENST00000479295	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.63	□□□□□ -0.23
PTPN18-210	ENST00000479295	GJD4	Q96KN9	370 aa	Predicted RBP	13.63	□□□□□ -0.23
PTPN18-210	ENST00000479295	RGS12	O14924	1447 aa		13.63	□□□□□ -0.23
PTPN18-210	ENST00000479295	HSPA5	P11021	654 aa	Known RBP	13.62	□□□□□ -0.23
PTPN18-210	ENST00000479295	NLRP6	P59044	892 aa		13.62	□□□□□ -0.23
PTPN18-210	ENST00000479295	NUTM2G	Q5VZR2	741 aa		13.62	□□□□□ -0.23
PTPN18-210	ENST00000479295	TMC1	Q8TDI8	760 aa		13.62	□□□□□ -0.23
PTPN18-210	ENST00000479295	NFAT5	O94916	1531 aa		13.61	□□□□□ -0.23
PTPN18-210	ENST00000479295	MYOM1	P52179	1685 aa		13.61	□□□□□ -0.23
PTPN18-210	ENST00000479295	PRDM11	Q9NQV5	511 aa		13.61	□□□□□ -0.23
PTPN18-210	ENST00000479295	OVOS2	A0A0J9YW53	1432 aa		13.61	□□□□□ -0.23
PTPN18-210	ENST00000479295	OVOS2	Q6IE36	1432 aa		13.61	□□□□□ -0.23
PTPN18-210	ENST00000479295	COL18A1	P39060	1754 aa		13.6	□□□□□ -0.23
PTPN18-210	ENST00000479295	AATK	Q6ZMQ8	1374 aa		13.6	□□□□□ -0.23
PTPN18-210	ENST00000479295	CAMTA1	Q9Y6Y1	1673 aa		13.6	□□□□□ -0.23
PTPN18-210	ENST00000479295	BTG4	Q9NY30	223 aa		13.6	□□□□□ -0.23
PTPN18-210	ENST00000479295	ABCC6	O95255	1503 aa		13.59	□□□□□ -0.23
PTPN18-210	ENST00000479295	ARHGEF25	Q86VW2	580 aa		13.59	□□□□□ -0.23
PTPN18-210	ENST00000479295	KCNH5	Q8NCM2	988 aa		13.59	□□□□□ -0.23
PTPN18-210	ENST00000479295	ZC3H6	P61129	1189 aa	Known RBP	13.58	□□□□□ -0.24
PTPN18-210	ENST00000479295	NME9	Q86XW9	330 aa		13.58	□□□□□ -0.24
PTPN18-210	ENST00000479295	SPATA31A5	Q5VU36	1347 aa		13.58	□□□□□ -0.24
PTPN18-210	ENST00000479295	SPATA31A7	Q8IWB4	1347 aa		13.58	□□□□□ -0.24
PTPN18-210	ENST00000479295	PLEKHG5	O94827	1062 aa		13.57	□□□□□ -0.24
PTPN18-210	ENST00000479295	ZRANB1	Q9UGI0	708 aa		13.57	□□□□□ -0.24
PTPN18-210	ENST00000479295	COL5A2	P05997	1499 aa	Predicted RBP	13.56	□□□□□ -0.24
PTPN18-210	ENST00000479295	CHRNA2	Q15822	529 aa		13.56	□□□□□ -0.24
PTPN18-210	ENST00000479295	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
PTPN18-210	ENST00000479295	C11orf95	C9JLR9	678 aa	Predicted RBP	13.55	□□□□□ -0.24
PTPN18-210	ENST00000479295	CARD14	Q9BXL6	1004 aa		13.55	□□□□□ -0.24
PTPN18-210	ENST00000479295	SPATA31A1	Q5TZJ5	1347 aa		13.55	□□□□□ -0.24
PTPN18-210	ENST00000479295	THSD7A	Q9UPZ6	1657 aa		13.54	□□□□□ -0.24
PTPN18-210	ENST00000479295	FYB1	O15117	783 aa		13.54	□□□□□ -0.24
PTPN18-210	ENST00000479295	AXIN2	Q9Y2T1	843 aa		13.53	□□□□□ -0.24
PTPN18-210	ENST00000479295	BARGIN	Q6ZT62	677 aa		13.52	□□□□□ -0.25
PTPN18-210	ENST00000479295	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
PTPN18-210	ENST00000479295	CRB1	P82279	1406 aa		13.5	□□□□□ -0.25
PTPN18-210	ENST00000479295	NSD3	Q9BZ95	1437 aa		13.5	□□□□□ -0.25
PTPN18-210	ENST00000479295	LARP1	Q6PKG0	1096 aa	Known RBP	13.5	□□□□□ -0.25
PTPN18-210	ENST00000479295	SEPT12	Q8IYM1	358 aa		13.5	□□□□□ -0.25
PTPN18-210	ENST00000479295	COG3	Q96JB2	828 aa		13.5	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms