RNA–Protein interactions for RNA: ENST00000477626.5

PRPF39-203, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,507 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-203ENST00000477626 CABP1Q9NZU7 370 aa16.46■□□□□ 0.23
PRPF39-203ENST00000477626 SAFB2Q14151 953 aaKnown RBP eCLIP16.45■□□□□ 0.22
PRPF39-203ENST00000477626 KCNA6P17658 529 aa16.45■□□□□ 0.22
PRPF39-203ENST00000477626 NCOA3Q9Y6Q9 1424 aa16.44■□□□□ 0.22
PRPF39-203ENST00000477626 NUDT16Q96DE0 195 aaKnown RBP16.44■□□□□ 0.22
PRPF39-203ENST00000477626 LMO7Q8WWI1 1683 aa16.44■□□□□ 0.22
PRPF39-203ENST00000477626 POGKQ9P215 609 aa16.44■□□□□ 0.22
PRPF39-203ENST00000477626 SLIT3O75094 1523 aa16.43■□□□□ 0.22
PRPF39-203ENST00000477626 FAM9BQ8IZU0 186 aa16.42■□□□□ 0.22
PRPF39-203ENST00000477626 SENP3Q9H4L4 574 aaPredicted RBP16.42■□□□□ 0.22
PRPF39-203ENST00000477626 ADAMTS8Q9UP79 889 aa16.42■□□□□ 0.22
PRPF39-203ENST00000477626 TRMT2AQ8IZ69 625 aaKnown RBP16.42■□□□□ 0.22
PRPF39-203ENST00000477626 GTF3C3Q9Y5Q9 886 aa16.42■□□□□ 0.22
PRPF39-203ENST00000477626 HNRNPUQ00839 825 aaKnown RBP eCLIP16.41■□□□□ 0.22
PRPF39-203ENST00000477626 ANKLE2Q86XL3 938 aa16.41■□□□□ 0.22
PRPF39-203ENST00000477626 TMC1Q8TDI8 760 aa16.41■□□□□ 0.22
PRPF39-203ENST00000477626 DCCP43146 1447 aa16.41■□□□□ 0.22
PRPF39-203ENST00000477626 CCDC61Q9Y6R9 512 aa16.41■□□□□ 0.22
PRPF39-203ENST00000477626 ABCA3Q99758 1704 aa16.41■□□□□ 0.22
PRPF39-203ENST00000477626 NCBP3Q53F19 620 aaKnown RBP16.4■□□□□ 0.22
PRPF39-203ENST00000477626 SRPK2P78362 688 aaKnown RBP16.4■□□□□ 0.22
PRPF39-203ENST00000477626 COL18A1P39060 1754 aa16.4■□□□□ 0.22
PRPF39-203ENST00000477626 LRRC37A3O60309 1634 aa16.4■□□□□ 0.22
PRPF39-203ENST00000477626 PLEKHF1Q96S99 279 aa16.38■□□□□ 0.21
PRPF39-203ENST00000477626 TERF2IPQ9NYB0 399 aa16.38■□□□□ 0.21
PRPF39-203ENST00000477626 MED1Q15648 1581 aaPredicted RBP16.37■□□□□ 0.21
PRPF39-203ENST00000477626 VIRMAQ69YN4 1812 aaKnown RBP16.36■□□□□ 0.21
PRPF39-203ENST00000477626 NHSL1Q5SYE7 1610 aa16.36■□□□□ 0.21
PRPF39-203ENST00000477626 RGPD2P0DJD1 1756 aa16.35■□□□□ 0.21
PRPF39-203ENST00000477626 ACEP12821 1306 aa16.34■□□□□ 0.21
PRPF39-203ENST00000477626 NCAPD2Q15021 1401 aa16.33■□□□□ 0.21
PRPF39-203ENST00000477626 POLKQ9UBT6 870 aa16.33■□□□□ 0.2
PRPF39-203ENST00000477626 TTC21BQ7Z4L5 1316 aa16.33■□□□□ 0.2
PRPF39-203ENST00000477626 ADAMTS7Q9UKP4 1686 aa16.32■□□□□ 0.2
PRPF39-203ENST00000477626 MTHFSP49914 203 aa16.32■□□□□ 0.2
PRPF39-203ENST00000477626 ZNF692Q9BU19 519 aaPredicted RBP16.32■□□□□ 0.2
PRPF39-203ENST00000477626 RGPD5Q99666 1765 aa16.31■□□□□ 0.2
PRPF39-203ENST00000477626 GGNBP2Q9H3C7 697 aa16.31■□□□□ 0.2
PRPF39-203ENST00000477626 PXDNQ92626 1479 aa16.31■□□□□ 0.2
PRPF39-203ENST00000477626 MORC1Q86VD1 984 aa16.31■□□□□ 0.2
PRPF39-203ENST00000477626 ZRANB1Q9UGI0 708 aa16.31■□□□□ 0.2
PRPF39-203ENST00000477626 C1orf167Q5SNV9 1468 aa16.31■□□□□ 0.2
PRPF39-203ENST00000477626 SUPT16HQ9Y5B9 1047 aaKnown RBP16.31■□□□□ 0.2
PRPF39-203ENST00000477626 HDGFL2Q7Z4V5 671 aaPredicted RBP16.3■□□□□ 0.2
PRPF39-203ENST00000477626 NME9Q86XW9 330 aa16.3■□□□□ 0.2
PRPF39-203ENST00000477626 NUDCQ9Y266 331 aa16.3■□□□□ 0.2
PRPF39-203ENST00000477626 FAM208AQ9UK61 1670 aaKnown RBP16.29■□□□□ 0.2
PRPF39-203ENST00000477626 TTC21AQ8NDW8 1320 aa16.29■□□□□ 0.2
PRPF39-203ENST00000477626 ABCC6O95255 1503 aa16.28■□□□□ 0.2
PRPF39-203ENST00000477626 PDE3BQ13370 1112 aa16.28■□□□□ 0.2
PRPF39-203ENST00000477626 LTBP4Q8N2S1 1624 aa16.28■□□□□ 0.2
PRPF39-203ENST00000477626 CCDC27Q2M243 656 aa16.27■□□□□ 0.2
PRPF39-203ENST00000477626 DMRT2Q9Y5R5 561 aa16.27■□□□□ 0.2
PRPF39-203ENST00000477626 SIPA1L3O60292 1781 aaPredicted RBP16.26■□□□□ 0.19
PRPF39-203ENST00000477626 IL13P35225 146 aa16.26■□□□□ 0.19
PRPF39-203ENST00000477626 SPINK5Q9NQ38 1064 aaPredicted RBP16.26■□□□□ 0.19
PRPF39-203ENST00000477626 DUSP27Q5VZP5 1158 aa16.25■□□□□ 0.19
PRPF39-203ENST00000477626 KIF24Q5T7B8 1368 aa16.25■□□□□ 0.19
PRPF39-203ENST00000477626 CNGB1Q14028 1251 aaPredicted RBP16.24■□□□□ 0.19
PRPF39-203ENST00000477626 KDRP35968 1356 aa16.23■□□□□ 0.19
PRPF39-203ENST00000477626 CDCA7LQ96GN5 454 aa16.23■□□□□ 0.19
PRPF39-203ENST00000477626 FBLN1P23142 703 aa16.23■□□□□ 0.19
PRPF39-203ENST00000477626 NGEFQ8N5V2 710 aa16.22■□□□□ 0.19
PRPF39-203ENST00000477626 RSPH6AQ9H0K4 717 aa16.22■□□□□ 0.19
PRPF39-203ENST00000477626 SLFN5Q08AF3 891 aa16.22■□□□□ 0.19
PRPF39-203ENST00000477626 USP19O94966 1318 aa16.21■□□□□ 0.19
PRPF39-203ENST00000477626 COL22A1Q8NFW1 1626 aaPredicted RBP16.21■□□□□ 0.19
PRPF39-203ENST00000477626 HSPA2P54652 639 aa16.2■□□□□ 0.18
PRPF39-203ENST00000477626 N4BP2Q86UW6 1770 aaPredicted RBP16.2■□□□□ 0.18
PRPF39-203ENST00000477626 SHANK3Q9BYB0 1731 aa16.2■□□□□ 0.18
PRPF39-203ENST00000477626 TMEM94Q12767 1356 aa16.19■□□□□ 0.18
PRPF39-203ENST00000477626 EMILIN1Q9Y6C2 1016 aa16.19■□□□□ 0.18
PRPF39-203ENST00000477626 RUNDC1Q96C34 613 aa16.19■□□□□ 0.18
PRPF39-203ENST00000477626 TRIM35Q9UPQ4 493 aa16.19■□□□□ 0.18
PRPF39-203ENST00000477626 RTL1A6NKG5 1358 aa16.18■□□□□ 0.18
PRPF39-203ENST00000477626 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.18■□□□□ 0.182e-6■■■□□ 14.7
PRPF39-203ENST00000477626 PKD1L3Q7Z443 1732 aa16.18■□□□□ 0.18
PRPF39-203ENST00000477626 SBNO1A3KN83 1393 aa16.18■□□□□ 0.18
PRPF39-203ENST00000477626 WWC1Q8IX03 1113 aa16.18■□□□□ 0.18
PRPF39-203ENST00000477626 KDM3BQ7LBC6 1761 aa16.17■□□□□ 0.18
PRPF39-203ENST00000477626 BCANQ96GW7 911 aa16.17■□□□□ 0.18
PRPF39-203ENST00000477626 CCDC146Q8IYE0 955 aa16.16■□□□□ 0.18
PRPF39-203ENST00000477626 ARHGEF10O15013 1369 aa16.16■□□□□ 0.18
PRPF39-203ENST00000477626 APAF1O14727 1248 aa16.16■□□□□ 0.18
PRPF39-203ENST00000477626 TNNT2P45379 298 aaPredicted RBP16.15■□□□□ 0.18
PRPF39-203ENST00000477626 WDR43Q15061 677 aaKnown RBP eCLIP16.15■□□□□ 0.189e-15■□□□□ 10.1
PRPF39-203ENST00000477626 ERICH6BQ5W0A0 696 aa16.14■□□□□ 0.17
PRPF39-203ENST00000477626 WNK3Q9BYP7 1800 aa16.14■□□□□ 0.17
PRPF39-203ENST00000477626 PARP4Q9UKK3 1724 aaKnown RBP16.13■□□□□ 0.17
PRPF39-203ENST00000477626 AHDC1Q5TGY3 1603 aaPredicted RBP16.13■□□□□ 0.17
PRPF39-203ENST00000477626 MAP3K19Q56UN5 1328 aa16.13■□□□□ 0.17
PRPF39-203ENST00000477626 PMFBP1Q8TBY8 1022 aa16.13■□□□□ 0.17
PRPF39-203ENST00000477626 RBM33Q96EV2 1170 aaKnown RBP16.13■□□□□ 0.17
PRPF39-203ENST00000477626 PHF8Q9UPP1 1060 aa16.13■□□□□ 0.17
PRPF39-203ENST00000477626 TCP11L2Q8N4U5 519 aa16.12■□□□□ 0.17
PRPF39-203ENST00000477626 COG3Q96JB2 828 aa16.12■□□□□ 0.17
PRPF39-203ENST00000477626 FCHSD2O94868 740 aa16.12■□□□□ 0.17
PRPF39-203ENST00000477626 C19orf44Q9H6X5 657 aa16.12■□□□□ 0.17
PRPF39-203ENST00000477626 FLT4P35916 1363 aa16.12■□□□□ 0.17
PRPF39-203ENST00000477626 EIF4A2Q14240 407 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms