RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 KAT6BQ8WYB5 2073 aa6.25□□□□□ -1.41
CCDC39-204ENST00000476379 E9PSI1 815 aa6.25□□□□□ -1.41
CCDC39-204ENST00000476379 NGEFQ8N5V2 710 aa6.25□□□□□ -1.41
CCDC39-204ENST00000476379 STRN4Q9NRL3 753 aa6.25□□□□□ -1.41
CCDC39-204ENST00000476379 RIMS2Q9UQ26 1411 aa6.25□□□□□ -1.41
CCDC39-204ENST00000476379 PSME1Q06323 249 aa6.25□□□□□ -1.41
CCDC39-204ENST00000476379 UHRF1BP1Q6BDS2 1440 aa6.25□□□□□ -1.41
CCDC39-204ENST00000476379 RILPL2Q969X0 211 aa6.25□□□□□ -1.41
CCDC39-204ENST00000476379 DZIP1LQ8IYY4 767 aaKnown RBP6.25□□□□□ -1.41
CCDC39-204ENST00000476379 RBM42Q9BTD8 480 aaKnown RBP6.25□□□□□ -1.41
CCDC39-204ENST00000476379 NOB1Q9ULX3 412 aaKnown RBP6.25□□□□□ -1.41
CCDC39-204ENST00000476379 CEP152O94986 1710 aa6.24□□□□□ -1.41
CCDC39-204ENST00000476379 MLH3Q9UHC1 1453 aa6.24□□□□□ -1.41
CCDC39-204ENST00000476379 MAP4K4O95819 1239 aaPredicted RBP6.24□□□□□ -1.41
CCDC39-204ENST00000476379 RBM10P98175 930 aaKnown RBP6.24□□□□□ -1.41
CCDC39-204ENST00000476379 OS9Q13438 667 aaPredicted RBP6.24□□□□□ -1.41
CCDC39-204ENST00000476379 C22orf23Q9BZE7 217 aa6.24□□□□□ -1.41
CCDC39-204ENST00000476379 PCDHB15Q9Y5E8 787 aa6.24□□□□□ -1.41
CCDC39-204ENST00000476379 BRD4O60885 1362 aaPredicted RBP6.24□□□□□ -1.41
CCDC39-204ENST00000476379 FOSBP53539 338 aa6.24□□□□□ -1.41
CCDC39-204ENST00000476379 ZKSCAN2Q63HK3 967 aa6.24□□□□□ -1.41
CCDC39-204ENST00000476379 CHAMP1Q96JM3 812 aa6.24□□□□□ -1.41
CCDC39-204ENST00000476379 NLRP6P59044 892 aa6.24□□□□□ -1.41
CCDC39-204ENST00000476379 DDX49Q9Y6V7 483 aaKnown RBP6.24□□□□□ -1.41
CCDC39-204ENST00000476379 RPRD2Q5VT52 1461 aaKnown RBP6.24□□□□□ -1.41
CCDC39-204ENST00000476379 ATF3P18847 181 aa6.23□□□□□ -1.41
CCDC39-204ENST00000476379 WWC1Q8IX03 1113 aa6.23□□□□□ -1.41
CCDC39-204ENST00000476379 FBXW7Q969H0 707 aa6.23□□□□□ -1.41
CCDC39-204ENST00000476379 EIF2S2P20042 333 aaKnown RBP6.23□□□□□ -1.41
CCDC39-204ENST00000476379 NUDT16Q96DE0 195 aaKnown RBP6.23□□□□□ -1.41
CCDC39-204ENST00000476379 FAM83GA6ND36 823 aa6.23□□□□□ -1.41
CCDC39-204ENST00000476379 GOLGA6L22H0YM25 854 aa6.23□□□□□ -1.41
CCDC39-204ENST00000476379 SMARCA5O60264 1052 aaPredicted RBP6.23□□□□□ -1.41
CCDC39-204ENST00000476379 ABTB2Q8N961 1025 aa6.23□□□□□ -1.41
CCDC39-204ENST00000476379 KDM4AO75164 1064 aa6.23□□□□□ -1.41
CCDC39-204ENST00000476379 PRKAR2BP31323 418 aa6.23□□□□□ -1.41
CCDC39-204ENST00000476379 CARD14Q9BXL6 1004 aa6.23□□□□□ -1.41
CCDC39-204ENST00000476379 EMILIN1Q9Y6C2 1016 aa6.23□□□□□ -1.41
CCDC39-204ENST00000476379 PPFIA3O75145 1194 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 SLFN5Q08AF3 891 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 MCTP1Q6DN14 999 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 C14orf93Q9H972 538 aaKnown RBP6.22□□□□□ -1.41
CCDC39-204ENST00000476379 CLTCQ00610 1675 aaKnown RBP6.22□□□□□ -1.41
CCDC39-204ENST00000476379 ABCC3O15438 1527 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 ROBO2Q9HCK4 1378 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 ADGRL2O95490 1459 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 PCNTO95613 3336 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 KRT24Q2M2I5 525 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 C8orf34Q49A92 452 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 TESK2Q96S53 571 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 PPRC1Q5VV67 1664 aaKnown RBP6.22□□□□□ -1.41
CCDC39-204ENST00000476379 RTEL1-TNFRSF6BF6WH68 1400 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 MAP3K4Q9Y6R4 1608 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 MS4A1P11836 297 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 KCNJ4P48050 445 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 TMEM57Q8N5G2 664 aa6.22□□□□□ -1.41
CCDC39-204ENST00000476379 CSB-PGBD3P0DP91 1061 aa6.21□□□□□ -1.41
CCDC39-204ENST00000476379 FAM13BQ9NYF5 915 aa6.21□□□□□ -1.41
CCDC39-204ENST00000476379 MADDQ8WXG6 1647 aa6.21□□□□□ -1.41
CCDC39-204ENST00000476379 TRAK2O60296 914 aa6.21□□□□□ -1.42
CCDC39-204ENST00000476379 ATAD2Q6PL18 1390 aa6.21□□□□□ -1.42
CCDC39-204ENST00000476379 TMEM2Q9UHN6 1383 aa6.21□□□□□ -1.42
CCDC39-204ENST00000476379 SSH1Q8WYL5 1049 aa6.21□□□□□ -1.42
CCDC39-204ENST00000476379 TBC1D2Q9BYX2 928 aa6.21□□□□□ -1.42
CCDC39-204ENST00000476379 PTPRMP28827 1452 aa6.21□□□□□ -1.42
CCDC39-204ENST00000476379 HDGFP51858 240 aaKnown RBP6.21□□□□□ -1.42
CCDC39-204ENST00000476379 ZBTB9Q96C00 473 aa6.21□□□□□ -1.42
CCDC39-204ENST00000476379 RUNDC1Q96C34 613 aa6.2□□□□□ -1.42
CCDC39-204ENST00000476379 CGNL1Q0VF96 1302 aa6.2□□□□□ -1.42
CCDC39-204ENST00000476379 RIMS1Q86UR5 1692 aaKnown RBP6.2□□□□□ -1.42
CCDC39-204ENST00000476379 MSNP26038 577 aaKnown RBP6.2□□□□□ -1.42
CCDC39-204ENST00000476379 CAVIN1Q6NZI2 390 aaKnown RBP6.2□□□□□ -1.42
CCDC39-204ENST00000476379 SHANK2Q9UPX8 1470 aa6.2□□□□□ -1.42
CCDC39-204ENST00000476379 PRR36Q9H6K5 1346 aa6.2□□□□□ -1.42
CCDC39-204ENST00000476379 CCDC27Q2M243 656 aa6.2□□□□□ -1.42
CCDC39-204ENST00000476379 LRRC59Q96AG4 307 aaKnown RBP6.2□□□□□ -1.42
CCDC39-204ENST00000476379 GDPD2Q9HCC8 539 aa6.2□□□□□ -1.42
CCDC39-204ENST00000476379 ERVK-7P63135 1459 aa6.2□□□□□ -1.42
CCDC39-204ENST00000476379 PER1O15534 1290 aaPredicted RBP6.19□□□□□ -1.42
CCDC39-204ENST00000476379 HDGFL2Q7Z4V5 671 aaPredicted RBP6.19□□□□□ -1.42
CCDC39-204ENST00000476379 ACEP12821 1306 aa6.19□□□□□ -1.42
CCDC39-204ENST00000476379 ARHGEF5Q12774 1597 aa6.19□□□□□ -1.42
CCDC39-204ENST00000476379 TMEM94Q12767 1356 aa6.19□□□□□ -1.42
CCDC39-204ENST00000476379 PRAG1Q86YV5 1406 aa6.19□□□□□ -1.42
CCDC39-204ENST00000476379 F6X3S4 739 aa6.19□□□□□ -1.42
CCDC39-204ENST00000476379 TULP1O00294 542 aaPredicted RBP6.19□□□□□ -1.42
CCDC39-204ENST00000476379 ARAP3Q8WWN8 1544 aa6.19□□□□□ -1.42
CCDC39-204ENST00000476379 DIAPH1O60610 1272 aaKnown RBP6.19□□□□□ -1.42
CCDC39-204ENST00000476379 RARSP54136 660 aaKnown RBP6.19□□□□□ -1.42
CCDC39-204ENST00000476379 C16orf71Q8IYS4 520 aaPredicted RBP6.19□□□□□ -1.42
CCDC39-204ENST00000476379 MAST1Q9Y2H9 1570 aa6.19□□□□□ -1.42
CCDC39-204ENST00000476379 CLTCL1P53675 1640 aa6.19□□□□□ -1.42
CCDC39-204ENST00000476379 MCM10Q7L590 875 aa6.19□□□□□ -1.42
CCDC39-204ENST00000476379 SYTL4Q96C24 671 aaPredicted RBP6.19□□□□□ -1.42
CCDC39-204ENST00000476379 WWC3Q9ULE0 1092 aa6.19□□□□□ -1.42
CCDC39-204ENST00000476379 SETD1BQ9UPS6 1966 aaKnown RBP6.18□□□□□ -1.42
CCDC39-204ENST00000476379 RICTORQ6R327 1708 aa6.18□□□□□ -1.42
CCDC39-204ENST00000476379 WASLO00401 505 aaPredicted RBP6.18□□□□□ -1.42
CCDC39-204ENST00000476379 ANO2Q9NQ90 1003 aa6.18□□□□□ -1.42
CCDC39-204ENST00000476379 EVC2Q86UK5 1308 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms