RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 POLR3AO14802 1390 aaPredicted RBP17.83■□□□□ 0.45
MSH5-SAPCD1-205ENST00000476085 NGDNQ8NEJ9 315 aaKnown RBP17.83■□□□□ 0.44
MSH5-SAPCD1-205ENST00000476085 COL14A1Q05707 1796 aaKnown RBP17.82■□□□□ 0.44
MSH5-SAPCD1-205ENST00000476085 PLEKHG3A1L390 1219 aa17.82■□□□□ 0.44
MSH5-SAPCD1-205ENST00000476085 TOPAZ1Q8N9V7 1692 aa17.82■□□□□ 0.44
MSH5-SAPCD1-205ENST00000476085 CCDC61Q9Y6R9 512 aa17.81■□□□□ 0.44
MSH5-SAPCD1-205ENST00000476085 PLEKHG5O94827 1062 aa17.8■□□□□ 0.44
MSH5-SAPCD1-205ENST00000476085 BTG4Q9NY30 223 aa17.8■□□□□ 0.44
MSH5-SAPCD1-205ENST00000476085 NBPF8Q3BBV2 869 aa17.79■□□□□ 0.44
MSH5-SAPCD1-205ENST00000476085 BLMP54132 1417 aaPredicted RBP17.79■□□□□ 0.44
MSH5-SAPCD1-205ENST00000476085 ACEP12821 1306 aa17.77■□□□□ 0.44
MSH5-SAPCD1-205ENST00000476085 SPATA31A5Q5VU36 1347 aa17.76■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 SPATA31A7Q8IWB4 1347 aa17.76■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 PAK3O75914 559 aaPredicted RBP17.76■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 KRT27Q7Z3Y8 459 aa17.76■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 L3MBTL2Q969R5 705 aa17.76■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 CCDC9Q9Y3X0 531 aaKnown RBP17.75■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 PHRF1Q9P1Y6 1649 aaKnown RBP17.75■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 CENPJQ9HC77 1338 aaPredicted RBP17.73■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 FAM98CQ17RN3 349 aaKnown RBP17.73■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 ZRANB1Q9UGI0 708 aa17.73■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 KIAA0232Q92628 1395 aa17.73■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 THSD7AQ9UPZ6 1657 aa17.72■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 SIN3AQ96ST3 1273 aa17.72■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 PRDM11Q9NQV5 511 aa17.72■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 DEFB132Q7Z7B7 95 aa17.71■□□□□ 0.43
MSH5-SAPCD1-205ENST00000476085 USP19O94966 1318 aa17.71■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 TRPM1Q7Z4N2 1603 aa17.7■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 QRICH2Q9H0J4 1663 aa17.7■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 SPATA31A1Q5TZJ5 1347 aa17.7■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 BRD4O60885 1362 aaPredicted RBP17.69■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 CPDO75976 1380 aa17.69■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 CHRNA2Q15822 529 aa17.69■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 NUTM2GQ5VZR2 741 aa17.69■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 CABP2Q9NPB3 220 aa17.69■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 PPIP5K1Q6PFW1 1433 aa17.69■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 ZC3H6P61129 1189 aaKnown RBP17.68■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 NRKQ7Z2Y5 1582 aa17.68■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 ABTB2Q8N961 1025 aa17.68■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 LMO7Q8WWI1 1683 aa17.67■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 SSH2Q76I76 1423 aa17.67■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 SRPK2P78362 688 aaKnown RBP17.67■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 CAMTA1Q9Y6Y1 1673 aa17.67■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 CABP1Q9NZU7 370 aa17.66■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 GCP02774 474 aa17.65■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 SF3B2Q13435 895 aaKnown RBP17.65■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 USP6P35125 1406 aa17.64■□□□□ 0.42
MSH5-SAPCD1-205ENST00000476085 BARGINQ6ZT62 677 aa17.64■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 NLRP13Q86W25 1043 aa17.64■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 DISP2A7MBM2 1401 aa17.63■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 RGPD1P0DJD0 1748 aa17.62■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 FAM182BQ5T319 152 aa17.62■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 STRN4Q9NRL3 753 aa17.62■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 A0A0G2JS52 829 aa17.61■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 MYT1Q01538 1121 aa17.61■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 EVC2Q86UK5 1308 aa17.61■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 TNS1Q9HBL0 1735 aaKnown RBP17.61■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 BAG6P46379 1132 aa17.6■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 NEUROD1Q13562 356 aa17.6■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 LARP1Q6PKG0 1096 aaKnown RBP17.6■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 SLIT3O75094 1523 aa17.6■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 COL18A1P39060 1754 aa17.59■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 ROCK2O75116 1388 aaKnown RBP17.59■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 AKAP12Q02952 1782 aa17.58■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 PIK3C2AO00443 1686 aa17.58■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 COL5A2P05997 1499 aaPredicted RBP17.58■□□□□ 0.41
MSH5-SAPCD1-205ENST00000476085 EVA1CP58658 441 aa17.58■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 FAM196AQ6ZSG2 479 aa17.58■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 ZNF692Q9BU19 519 aaPredicted RBP17.58■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 THRAP3Q9Y2W1 955 aaKnown RBP17.58■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 CPSF1Q10570 1443 aaKnown RBP17.57■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 AATKQ6ZMQ8 1374 aa17.57■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 NLRP6P59044 892 aa17.57■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 EN1Q05925 392 aaPredicted RBP17.57■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 TCP11L2Q8N4U5 519 aa17.57■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 SBNO2Q9Y2G9 1366 aa17.56■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 TTC21BQ7Z4L5 1316 aa17.55■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 CAMKK2Q96RR4 588 aa17.55■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 USP35Q9P2H5 1018 aa17.55■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 PARP4Q9UKK3 1724 aaKnown RBP17.55■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 TRIM37O94972 964 aa17.53■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 ARHGEF25Q86VW2 580 aa17.53■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 AXIN2Q9Y2T1 843 aa17.53■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 LRP5O75197 1615 aa17.53■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 CRB1P82279 1406 aa17.53■□□□□ 0.4
MSH5-SAPCD1-205ENST00000476085 TTC21AQ8NDW8 1320 aa17.51■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 PDE3BQ13370 1112 aa17.51■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 EZH2Q15910 746 aaKnown RBP17.51■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 RGPD5Q99666 1765 aa17.5■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 CD163L1Q9NR16 1453 aa17.5■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 MON2Q7Z3U7 1717 aa17.5■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 PEAK1Q9H792 1746 aa17.5■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 PSDA5PKW4 1024 aaPredicted RBP17.49■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 PARD3Q8TEW0 1356 aa17.49■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 NFAT5O94916 1531 aa17.48■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 KCNH5Q8NCM2 988 aa17.48■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 CARD11Q9BXL7 1154 aa17.48■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 USP54Q70EL1 1684 aa17.48■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 RREB1Q92766 1687 aa17.48■□□□□ 0.39
MSH5-SAPCD1-205ENST00000476085 WDR17Q8IZU2 1322 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms