RNA–Protein interactions for RNA: ENST00000475432.6

HIF3A-207, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,004 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-207ENST00000475432 PHF8Q9UPP1 1060 aa24.21■■□□□ 1.47
HIF3A-207ENST00000475432 ZNF335Q9H4Z2 1342 aaPredicted RBP24.2■■□□□ 1.46
HIF3A-207ENST00000475432 ZRANB1Q9UGI0 708 aa24.2■■□□□ 1.46
HIF3A-207ENST00000475432 ESCO1Q5FWF5 840 aa24.19■■□□□ 1.46
HIF3A-207ENST00000475432 DMRT2Q9Y5R5 561 aa24.19■■□□□ 1.46
HIF3A-207ENST00000475432 COG3Q96JB2 828 aa24.18■■□□□ 1.46
HIF3A-207ENST00000475432 WDR43Q15061 677 aaKnown RBP eCLIP24.18■■□□□ 1.46
HIF3A-207ENST00000475432 INSRP06213 1382 aa24.17■■□□□ 1.46
HIF3A-207ENST00000475432 TTC21AQ8NDW8 1320 aa24.17■■□□□ 1.46
HIF3A-207ENST00000475432 SCAF1Q9H7N4 1312 aaKnown RBP24.17■■□□□ 1.46
HIF3A-207ENST00000475432 DCCP43146 1447 aa24.17■■□□□ 1.46
HIF3A-207ENST00000475432 ADAMTS8Q9UP79 889 aa24.17■■□□□ 1.46
HIF3A-207ENST00000475432 ATF3P18847 181 aa24.15■■□□□ 1.46
HIF3A-207ENST00000475432 CFAP53Q96M91 514 aa24.15■■□□□ 1.46
HIF3A-207ENST00000475432 ORAI2Q96SN7 254 aa24.15■■□□□ 1.46
HIF3A-207ENST00000475432 ZBED9Q6R2W3 1325 aa24.14■■□□□ 1.45
HIF3A-207ENST00000475432 C1orf167Q5SNV9 1468 aa24.14■■□□□ 1.45
HIF3A-207ENST00000475432 LRRC7Q96NW7 1537 aa24.14■■□□□ 1.45
HIF3A-207ENST00000475432 MSH6P52701 1360 aa24.12■■□□□ 1.45
HIF3A-207ENST00000475432 OVOS2A0A0J9YW53 1432 aa24.12■■□□□ 1.45
HIF3A-207ENST00000475432 BLMP54132 1417 aaPredicted RBP24.12■■□□□ 1.45
HIF3A-207ENST00000475432 OVOS2Q6IE36 1432 aa24.12■■□□□ 1.45
HIF3A-207ENST00000475432 FBLN1P23142 703 aa24.12■■□□□ 1.45
HIF3A-207ENST00000475432 CADPS2Q86UW7 1296 aa24.11■■□□□ 1.45
HIF3A-207ENST00000475432 AATKQ6ZMQ8 1374 aa24.11■■□□□ 1.45
HIF3A-207ENST00000475432 MST1RQ04912 1400 aa24.11■■□□□ 1.45
HIF3A-207ENST00000475432 POLKQ9UBT6 870 aa24.11■■□□□ 1.45
HIF3A-207ENST00000475432 PSME1Q06323 249 aa24.08■■□□□ 1.45
HIF3A-207ENST00000475432 USP31Q70CQ4 1352 aa24.08■■□□□ 1.44
HIF3A-207ENST00000475432 PNPLA6Q8IY17 1366 aa24.08■■□□□ 1.44
HIF3A-207ENST00000475432 SENP3-EIF4A1A0A087X0R7 540 aa24.08■■□□□ 1.44
HIF3A-207ENST00000475432 FOXO3O43524 673 aa24.06■■□□□ 1.44
HIF3A-207ENST00000475432 PAK3O75914 559 aaPredicted RBP24.06■■□□□ 1.44
HIF3A-207ENST00000475432 EMILIN1Q9Y6C2 1016 aa24.06■■□□□ 1.44
HIF3A-207ENST00000475432 XIRP1Q702N8 1843 aaKnown RBP24.06■■□□□ 1.44
HIF3A-207ENST00000475432 COL3A1P02461 1466 aaPredicted RBP24.06■■□□□ 1.44
HIF3A-207ENST00000475432 SHPRHQ149N8 1683 aa24.05■■□□□ 1.44
HIF3A-207ENST00000475432 SMG6Q86US8 1419 aaKnown RBP24.05■■□□□ 1.44
HIF3A-207ENST00000475432 PPM1GO15355 546 aaPredicted RBP24.05■■□□□ 1.44
HIF3A-207ENST00000475432 PIK3C2AO00443 1686 aa24.05■■□□□ 1.44
HIF3A-207ENST00000475432 NLRP6P59044 892 aa24.04■■□□□ 1.44
HIF3A-207ENST00000475432 ABTB2Q8N961 1025 aa24.04■■□□□ 1.44
HIF3A-207ENST00000475432 RRS1Q15050 365 aaKnown RBP24.03■■□□□ 1.44
HIF3A-207ENST00000475432 KIF1AQ12756 1690 aa24.02■■□□□ 1.44
HIF3A-207ENST00000475432 NUTM2GQ5VZR2 741 aa24.01■■□□□ 1.43
HIF3A-207ENST00000475432 DIAPH1O60610 1272 aaKnown RBP24■■□□□ 1.43
HIF3A-207ENST00000475432 XPCQ01831 940 aaPredicted RBP24■■□□□ 1.43
HIF3A-207ENST00000475432 NUDCQ9Y266 331 aa24■■□□□ 1.43
HIF3A-207ENST00000475432 CDK12Q9NYV4 1490 aaPredicted RBP24■■□□□ 1.43
HIF3A-207ENST00000475432 CCDC146Q8IYE0 955 aa24■■□□□ 1.43
HIF3A-207ENST00000475432 SOX12O15370 315 aa23.98■■□□□ 1.43
HIF3A-207ENST00000475432 MAP2P11137 1827 aaKnown RBP23.98■■□□□ 1.43
HIF3A-207ENST00000475432 U2AF1L5P0DN76 240 aaPredicted RBP23.98■■□□□ 1.43
HIF3A-207ENST00000475432 U2AF1Q01081 240 aaKnown RBP eCLIP23.98■■□□□ 1.43
HIF3A-207ENST00000475432 KRT28Q7Z3Y7 464 aa23.98■■□□□ 1.43
HIF3A-207ENST00000475432 SALL2Q9Y467 1007 aaPredicted RBP23.98■■□□□ 1.43
HIF3A-207ENST00000475432 U2SURPO15042 1029 aaKnown RBP23.96■■□□□ 1.43
HIF3A-207ENST00000475432 USP54Q70EL1 1684 aa23.95■■□□□ 1.43
HIF3A-207ENST00000475432 SLAIN2Q9P270 581 aa23.95■■□□□ 1.42
HIF3A-207ENST00000475432 MAP3K19Q56UN5 1328 aa23.93■■□□□ 1.42
HIF3A-207ENST00000475432 APAF1O14727 1248 aa23.93■■□□□ 1.42
HIF3A-207ENST00000475432 BRINP3Q76B58 766 aa23.93■■□□□ 1.42
HIF3A-207ENST00000475432 DDX17Q92841 729 aaKnown RBP23.93■■□□□ 1.42
HIF3A-207ENST00000475432 NPHP3Q7Z494 1330 aa23.93■■□□□ 1.42
HIF3A-207ENST00000475432 MARF1Q9Y4F3 1742 aaKnown RBP23.93■■□□□ 1.42
HIF3A-207ENST00000475432 RUNDC1Q96C34 613 aa23.92■■□□□ 1.42
HIF3A-207ENST00000475432 IL13P35225 146 aa23.91■■□□□ 1.42
HIF3A-207ENST00000475432 TRPM3Q9HCF6 1732 aaPredicted RBP23.91■■□□□ 1.42
HIF3A-207ENST00000475432 SBNO1A3KN83 1393 aa23.89■■□□□ 1.42
HIF3A-207ENST00000475432 LMOD2Q6P5Q4 547 aa23.89■■□□□ 1.41
HIF3A-207ENST00000475432 PEAK1Q9H792 1746 aa23.88■■□□□ 1.41
HIF3A-207ENST00000475432 HSP90AB2PQ58FF8 381 aa23.88■■□□□ 1.41
HIF3A-207ENST00000475432 FLT4P35916 1363 aa23.88■■□□□ 1.41
HIF3A-207ENST00000475432 LTBP4Q8N2S1 1624 aa23.88■■□□□ 1.41
HIF3A-207ENST00000475432 AMPHP49418 695 aa23.86■■□□□ 1.41
HIF3A-207ENST00000475432 PDE3BQ13370 1112 aa23.86■■□□□ 1.41
HIF3A-207ENST00000475432 KCNH5Q8NCM2 988 aa23.86■■□□□ 1.41
HIF3A-207ENST00000475432 PLEKHF1Q96S99 279 aa23.86■■□□□ 1.41
HIF3A-207ENST00000475432 PXDNQ92626 1479 aa23.86■■□□□ 1.41
HIF3A-207ENST00000475432 EIF4A2Q14240 407 aaKnown RBP23.86■■□□□ 1.41
HIF3A-207ENST00000475432 TCP11L2Q8N4U5 519 aa23.86■■□□□ 1.41
HIF3A-207ENST00000475432 NGEFQ8N5V2 710 aa23.86■■□□□ 1.41
HIF3A-207ENST00000475432 FCHSD2O94868 740 aa23.85■■□□□ 1.41
HIF3A-207ENST00000475432 KIF24Q5T7B8 1368 aa23.85■■□□□ 1.41
HIF3A-207ENST00000475432 IQSEC2Q5JU85 1478 aa23.85■■□□□ 1.41
HIF3A-207ENST00000475432 USP19O94966 1318 aa23.85■■□□□ 1.41
HIF3A-207ENST00000475432 ZNF521Q96K83 1311 aa23.85■■□□□ 1.41
HIF3A-207ENST00000475432 NFAT5O94916 1531 aa23.84■■□□□ 1.41
HIF3A-207ENST00000475432 PNNQ9H307 717 aaKnown RBP23.83■■□□□ 1.41
HIF3A-207ENST00000475432 SLIT3O75094 1523 aa23.83■■□□□ 1.4
HIF3A-207ENST00000475432 GCP02774 474 aa23.83■■□□□ 1.4
HIF3A-207ENST00000475432 RSPH6AQ9H0K4 717 aa23.83■■□□□ 1.4
HIF3A-207ENST00000475432 ALS2Q96Q42 1657 aa23.82■■□□□ 1.4
HIF3A-207ENST00000475432 GTF3C3Q9Y5Q9 886 aa23.82■■□□□ 1.4
HIF3A-207ENST00000475432 TNS3Q68CZ2 1445 aa23.82■■□□□ 1.4
HIF3A-207ENST00000475432 HOXC9P31274 260 aa23.81■■□□□ 1.4
HIF3A-207ENST00000475432 HMOX1P09601 288 aa23.81■■□□□ 1.4
HIF3A-207ENST00000475432 CDCA7LQ96GN5 454 aa23.81■■□□□ 1.4
HIF3A-207ENST00000475432 RRP7AQ9Y3A4 280 aaKnown RBP23.81■■□□□ 1.4
HIF3A-207ENST00000475432 SPATA31A3Q5VYP0 1347 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms