RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 TRPM1Q7Z4N2 1603 aa16.38■□□□□ 0.21
HLA-DOB-208ENST00000475235 RGPD8O14715 1765 aaPredicted RBP16.38■□□□□ 0.21
HLA-DOB-208ENST00000475235 SRPK2P78362 688 aaKnown RBP16.37■□□□□ 0.21
HLA-DOB-208ENST00000475235 NBPF8Q3BBV2 869 aa16.36■□□□□ 0.21
HLA-DOB-208ENST00000475235 PLEKHG3A1L390 1219 aa16.35■□□□□ 0.21
HLA-DOB-208ENST00000475235 POLR3AO14802 1390 aaPredicted RBP16.35■□□□□ 0.21
HLA-DOB-208ENST00000475235 PAK3O75914 559 aaPredicted RBP16.35■□□□□ 0.21
HLA-DOB-208ENST00000475235 ITSN1Q15811 1721 aa16.35■□□□□ 0.21
HLA-DOB-208ENST00000475235 EVC2Q86UK5 1308 aa16.34■□□□□ 0.21
HLA-DOB-208ENST00000475235 CABLES1Q8TDN4 633 aa16.34■□□□□ 0.21
HLA-DOB-208ENST00000475235 BCL9LQ86UU0 1499 aa16.33■□□□□ 0.21
HLA-DOB-208ENST00000475235 ACEP12821 1306 aa16.33■□□□□ 0.2
HLA-DOB-208ENST00000475235 ATRNO75882 1429 aa16.33■□□□□ 0.2
HLA-DOB-208ENST00000475235 CARD11Q9BXL7 1154 aa16.33■□□□□ 0.2
HLA-DOB-208ENST00000475235 CABP2Q9NPB3 220 aa16.33■□□□□ 0.2
HLA-DOB-208ENST00000475235 TRPM3Q9HCF6 1732 aaPredicted RBP16.32■□□□□ 0.2
HLA-DOB-208ENST00000475235 RALGAPBQ86X10 1494 aa16.32■□□□□ 0.2
HLA-DOB-208ENST00000475235 PPIP5K1Q6PFW1 1433 aa16.32■□□□□ 0.2
HLA-DOB-208ENST00000475235 SLIT2O94813 1529 aa16.31■□□□□ 0.2
HLA-DOB-208ENST00000475235 PLEKHG5O94827 1062 aa16.31■□□□□ 0.2
HLA-DOB-208ENST00000475235 UNC5CLQ8IV45 518 aa16.31■□□□□ 0.2
HLA-DOB-208ENST00000475235 QRICH2Q9H0J4 1663 aa16.31■□□□□ 0.2
HLA-DOB-208ENST00000475235 TOPAZ1Q8N9V7 1692 aa16.3■□□□□ 0.2
HLA-DOB-208ENST00000475235 RGS12O14924 1447 aa16.3■□□□□ 0.2
HLA-DOB-208ENST00000475235 BRD4O60885 1362 aaPredicted RBP16.3■□□□□ 0.2
HLA-DOB-208ENST00000475235 SBNO2Q9Y2G9 1366 aa16.3■□□□□ 0.2
HLA-DOB-208ENST00000475235 ALS2Q96Q42 1657 aa16.29■□□□□ 0.2
HLA-DOB-208ENST00000475235 MARF1Q9Y4F3 1742 aaKnown RBP16.29■□□□□ 0.2
HLA-DOB-208ENST00000475235 GJD4Q96KN9 370 aaPredicted RBP16.29■□□□□ 0.2
HLA-DOB-208ENST00000475235 CLSPNQ9HAW4 1339 aa16.28■□□□□ 0.2
HLA-DOB-208ENST00000475235 CABP1Q9NZU7 370 aa16.27■□□□□ 0.2
HLA-DOB-208ENST00000475235 ATAD2Q6PL18 1390 aa16.27■□□□□ 0.19
HLA-DOB-208ENST00000475235 DCAF8L1A6NGE4 600 aa16.26■□□□□ 0.19
HLA-DOB-208ENST00000475235 FAM83GA6ND36 823 aa16.25■□□□□ 0.19
HLA-DOB-208ENST00000475235 ABTB2Q8N961 1025 aa16.25■□□□□ 0.19
HLA-DOB-208ENST00000475235 PCGF6Q9BYE7 350 aa16.25■□□□□ 0.19
HLA-DOB-208ENST00000475235 TIMELESSQ9UNS1 1208 aa16.25■□□□□ 0.19
HLA-DOB-208ENST00000475235 ABCA3Q99758 1704 aa16.25■□□□□ 0.19
HLA-DOB-208ENST00000475235 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.25■□□□□ 0.19
HLA-DOB-208ENST00000475235 VPS72Q15906 364 aa16.24■□□□□ 0.19
HLA-DOB-208ENST00000475235 UPF1Q92900 1129 aaKnown RBP eCLIP16.24■□□□□ 0.19
HLA-DOB-208ENST00000475235 PRDM11Q9NQV5 511 aa16.24■□□□□ 0.19
HLA-DOB-208ENST00000475235 USP6P35125 1406 aa16.23■□□□□ 0.19
HLA-DOB-208ENST00000475235 NLRP13Q86W25 1043 aa16.23■□□□□ 0.19
HLA-DOB-208ENST00000475235 ZNF692Q9BU19 519 aaPredicted RBP16.23■□□□□ 0.19
HLA-DOB-208ENST00000475235 BTG4Q9NY30 223 aa16.23■□□□□ 0.19
HLA-DOB-208ENST00000475235 NUTM2GQ5VZR2 741 aa16.21■□□□□ 0.19
HLA-DOB-208ENST00000475235 CCDC9Q9Y3X0 531 aaKnown RBP16.21■□□□□ 0.19
HLA-DOB-208ENST00000475235 NWD2Q9ULI1 1742 aa16.21■□□□□ 0.19
HLA-DOB-208ENST00000475235 USP19O94966 1318 aa16.2■□□□□ 0.18
HLA-DOB-208ENST00000475235 COL14A1Q05707 1796 aaKnown RBP16.2■□□□□ 0.18
HLA-DOB-208ENST00000475235 KIAA0232Q92628 1395 aa16.2■□□□□ 0.18
HLA-DOB-208ENST00000475235 PLCH1Q4KWH8 1693 aa16.2■□□□□ 0.18
HLA-DOB-208ENST00000475235 PUS7Q96PZ0 661 aaKnown RBP16.19■□□□□ 0.18
HLA-DOB-208ENST00000475235 CRYBG1Q9Y4K1 1723 aa16.19■□□□□ 0.18
HLA-DOB-208ENST00000475235 SSH2Q76I76 1423 aa16.19■□□□□ 0.18
HLA-DOB-208ENST00000475235 GLI3P10071 1580 aa16.18■□□□□ 0.18
HLA-DOB-208ENST00000475235 ZC3H6P61129 1189 aaKnown RBP16.18■□□□□ 0.18
HLA-DOB-208ENST00000475235 CPDO75976 1380 aa16.17■□□□□ 0.18
HLA-DOB-208ENST00000475235 PHRF1Q9P1Y6 1649 aaKnown RBP16.17■□□□□ 0.18
HLA-DOB-208ENST00000475235 ONECUT3O60422 494 aaPredicted RBP16.17■□□□□ 0.18
HLA-DOB-208ENST00000475235 GCP02774 474 aa16.17■□□□□ 0.18
HLA-DOB-208ENST00000475235 NLRP6P59044 892 aa16.17■□□□□ 0.18
HLA-DOB-208ENST00000475235 CPSF1Q10570 1443 aaKnown RBP16.17■□□□□ 0.18
HLA-DOB-208ENST00000475235 TTC21AQ8NDW8 1320 aa16.16■□□□□ 0.18
HLA-DOB-208ENST00000475235 ST20-MTHFSA0A0A6YYL1 179 aa16.16■□□□□ 0.18
HLA-DOB-208ENST00000475235 KTN1Q86UP2 1357 aaKnown RBP16.16■□□□□ 0.18
HLA-DOB-208ENST00000475235 TTC21BQ7Z4L5 1316 aa16.15■□□□□ 0.18
HLA-DOB-208ENST00000475235 CHRNA2Q15822 529 aa16.15■□□□□ 0.18
HLA-DOB-208ENST00000475235 SEPT12Q8IYM1 358 aa16.15■□□□□ 0.18
HLA-DOB-208ENST00000475235 NRKQ7Z2Y5 1582 aa16.15■□□□□ 0.18
HLA-DOB-208ENST00000475235 TMC1Q8TDI8 760 aa16.14■□□□□ 0.18
HLA-DOB-208ENST00000475235 TESK2Q96S53 571 aa16.14■□□□□ 0.18
HLA-DOB-208ENST00000475235 SPATA31A5Q5VU36 1347 aa16.14■□□□□ 0.17
HLA-DOB-208ENST00000475235 SPATA31A7Q8IWB4 1347 aa16.14■□□□□ 0.17
HLA-DOB-208ENST00000475235 HDGFL2Q7Z4V5 671 aaPredicted RBP16.14■□□□□ 0.17
HLA-DOB-208ENST00000475235 NRAPQ86VF7 1730 aa16.14■□□□□ 0.17
HLA-DOB-208ENST00000475235 NINLQ9Y2I6 1382 aa16.13■□□□□ 0.17
HLA-DOB-208ENST00000475235 CCER1Q8TC90 406 aaPredicted RBP16.13■□□□□ 0.17
HLA-DOB-208ENST00000475235 TERF2IPQ9NYB0 399 aa16.13■□□□□ 0.17
HLA-DOB-208ENST00000475235 USP47Q96K76 1375 aa16.13■□□□□ 0.17
HLA-DOB-208ENST00000475235 A0A0G2JS52 829 aa16.12■□□□□ 0.17
HLA-DOB-208ENST00000475235 EVA1CP58658 441 aa16.12■□□□□ 0.17
HLA-DOB-208ENST00000475235 FAM98CQ17RN3 349 aaKnown RBP16.12■□□□□ 0.17
HLA-DOB-208ENST00000475235 CCDC125Q86Z20 511 aa16.12■□□□□ 0.17
HLA-DOB-208ENST00000475235 KCNH5Q8NCM2 988 aa16.12■□□□□ 0.17
HLA-DOB-208ENST00000475235 STRN4Q9NRL3 753 aa16.12■□□□□ 0.17
HLA-DOB-208ENST00000475235 SLIT3O75094 1523 aa16.12■□□□□ 0.17
HLA-DOB-208ENST00000475235 CENPBP07199 599 aaPredicted RBP16.11■□□□□ 0.17
HLA-DOB-208ENST00000475235 TMF1P82094 1093 aa16.1■□□□□ 0.17
HLA-DOB-208ENST00000475235 KRT27Q7Z3Y8 459 aa16.1■□□□□ 0.17
HLA-DOB-208ENST00000475235 SLC12A5Q9H2X9 1139 aa16.1■□□□□ 0.17
HLA-DOB-208ENST00000475235 SPATA31A1Q5TZJ5 1347 aa16.1■□□□□ 0.17
HLA-DOB-208ENST00000475235 CD163L1Q9NR16 1453 aa16.09■□□□□ 0.17
HLA-DOB-208ENST00000475235 PIK3C2AO00443 1686 aa16.09■□□□□ 0.17
HLA-DOB-208ENST00000475235 AATKQ6ZMQ8 1374 aa16.09■□□□□ 0.17
HLA-DOB-208ENST00000475235 AKAP12Q02952 1782 aa16.08■□□□□ 0.17
HLA-DOB-208ENST00000475235 CDCA8Q53HL2 280 aa16.08■□□□□ 0.16
HLA-DOB-208ENST00000475235 EDC4Q6P2E9 1401 aaKnown RBP16.08■□□□□ 0.16
HLA-DOB-208ENST00000475235 CAMTA1Q9Y6Y1 1673 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms