RNA–Protein interactions for RNA: ENST00000474825.1

ATG4A-207, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-207ENST00000474825 NPC1L1Q9UHC9 1359 aa9.12□□□□□ -0.95
ATG4A-207ENST00000474825 QRICH2Q9H0J4 1663 aa9.11□□□□□ -0.95
ATG4A-207ENST00000474825 MAP3K13O43283 966 aa9.11□□□□□ -0.95
ATG4A-207ENST00000474825 ROBO2Q9HCK4 1378 aa9.11□□□□□ -0.95
ATG4A-207ENST00000474825 NINLQ9Y2I6 1382 aa9.11□□□□□ -0.95
ATG4A-207ENST00000474825 SLC26A8Q96RN1 970 aa9.1□□□□□ -0.95
ATG4A-207ENST00000474825 PANK3Q9H999 370 aa9.1□□□□□ -0.95
ATG4A-207ENST00000474825 COLQQ9Y215 455 aaPredicted RBP9.1□□□□□ -0.95
ATG4A-207ENST00000474825 PLEKHH1Q9ULM0 1364 aa9.1□□□□□ -0.95
ATG4A-207ENST00000474825 NPHP4O75161 1426 aaPredicted RBP9.09□□□□□ -0.95
ATG4A-207ENST00000474825 TTLL13PA6NNM8 815 aa9.09□□□□□ -0.95
ATG4A-207ENST00000474825 SEC24BO95487 1268 aa9.09□□□□□ -0.95
ATG4A-207ENST00000474825 IER5LQ5T953 404 aa9.09□□□□□ -0.95
ATG4A-207ENST00000474825 WAPLQ7Z5K2 1190 aa9.09□□□□□ -0.95
ATG4A-207ENST00000474825 POGKQ9P215 609 aa9.09□□□□□ -0.95
ATG4A-207ENST00000474825 MYOM1P52179 1685 aa9.09□□□□□ -0.95
ATG4A-207ENST00000474825 ATAD2Q6PL18 1390 aa9.09□□□□□ -0.95
ATG4A-207ENST00000474825 STRCQ7RTU9 1775 aa9.09□□□□□ -0.95
ATG4A-207ENST00000474825 XRN1Q8IZH2 1706 aaKnown RBP9.08□□□□□ -0.96
ATG4A-207ENST00000474825 ADGRB2O60241 1585 aa9.08□□□□□ -0.96
ATG4A-207ENST00000474825 AMER1Q5JTC6 1135 aaPredicted RBP9.08□□□□□ -0.96
ATG4A-207ENST00000474825 AMOTL2Q9Y2J4 779 aa9.08□□□□□ -0.96
ATG4A-207ENST00000474825 PARD3Q8TEW0 1356 aa9.08□□□□□ -0.96
ATG4A-207ENST00000474825 NCKAP5LQ9HCH0 1330 aa9.07□□□□□ -0.96
ATG4A-207ENST00000474825 WASLO00401 505 aaPredicted RBP9.07□□□□□ -0.96
ATG4A-207ENST00000474825 RALBP1Q15311 655 aa9.07□□□□□ -0.96
ATG4A-207ENST00000474825 CARD14Q9BXL6 1004 aa9.07□□□□□ -0.96
ATG4A-207ENST00000474825 BCANQ96GW7 911 aa9.06□□□□□ -0.96
ATG4A-207ENST00000474825 POLR3GLQ9BT43 218 aa9.06□□□□□ -0.96
ATG4A-207ENST00000474825 CDK19Q9BWU1 502 aa9.06□□□□□ -0.96
ATG4A-207ENST00000474825 ANKRD36BQ8N2N9 1353 aa9.06□□□□□ -0.96
ATG4A-207ENST00000474825 MINK1Q8N4C8 1332 aaPredicted RBP9.05□□□□□ -0.96
ATG4A-207ENST00000474825 KCNA6P17658 529 aa9.05□□□□□ -0.96
ATG4A-207ENST00000474825 SLC12A5Q9H2X9 1139 aa9.05□□□□□ -0.96
ATG4A-207ENST00000474825 CABP2Q9NPB3 220 aa9.05□□□□□ -0.96
ATG4A-207ENST00000474825 NWD1Q149M9 1564 aa9.04□□□□□ -0.96
ATG4A-207ENST00000474825 CD163L1Q9NR16 1453 aa9.04□□□□□ -0.96
ATG4A-207ENST00000474825 CHD2O14647 1828 aaKnown RBP9.04□□□□□ -0.96
ATG4A-207ENST00000474825 SAFB2Q14151 953 aaKnown RBP eCLIP9.04□□□□□ -0.96
ATG4A-207ENST00000474825 SGIP1Q9BQI5 828 aa9.04□□□□□ -0.96
ATG4A-207ENST00000474825 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.04□□□□□ -0.96
ATG4A-207ENST00000474825 ATP7BP35670 1465 aa9.03□□□□□ -0.96
ATG4A-207ENST00000474825 RASEFQ8IZ41 740 aa9.03□□□□□ -0.96
ATG4A-207ENST00000474825 TRIM35Q9UPQ4 493 aa9.03□□□□□ -0.96
ATG4A-207ENST00000474825 KNSTRNQ9Y448 316 aa9.03□□□□□ -0.96
ATG4A-207ENST00000474825 CPSF1Q10570 1443 aaKnown RBP9.03□□□□□ -0.96
ATG4A-207ENST00000474825 MYBBP1AQ9BQG0 1328 aaKnown RBP9.03□□□□□ -0.96
ATG4A-207ENST00000474825 USP32Q8NFA0 1604 aa9.02□□□□□ -0.96
ATG4A-207ENST00000474825 PLEKHG3A1L390 1219 aa9.02□□□□□ -0.97
ATG4A-207ENST00000474825 ST18O60284 1047 aa9.02□□□□□ -0.97
ATG4A-207ENST00000474825 PLEKHG5O94827 1062 aa9.02□□□□□ -0.97
ATG4A-207ENST00000474825 SRPK2P78362 688 aaKnown RBP9.02□□□□□ -0.97
ATG4A-207ENST00000474825 NCOA3Q9Y6Q9 1424 aa9.02□□□□□ -0.97
ATG4A-207ENST00000474825 PRR36Q9H6K5 1346 aa9.02□□□□□ -0.97
ATG4A-207ENST00000474825 BRD4O60885 1362 aaPredicted RBP9.01□□□□□ -0.97
ATG4A-207ENST00000474825 NSD2O96028 1365 aa9.01□□□□□ -0.97
ATG4A-207ENST00000474825 ANKARQ7Z5J8 1434 aa9.01□□□□□ -0.97
ATG4A-207ENST00000474825 SLAIN1Q8ND83 568 aa9.01□□□□□ -0.97
ATG4A-207ENST00000474825 NUDT16Q96DE0 195 aaKnown RBP9.01□□□□□ -0.97
ATG4A-207ENST00000474825 TERF2IPQ9NYB0 399 aa9.01□□□□□ -0.97
ATG4A-207ENST00000474825 CABP1Q9NZU7 370 aa9.01□□□□□ -0.97
ATG4A-207ENST00000474825 NKTRP30414 1462 aaKnown RBP9.01□□□□□ -0.97
ATG4A-207ENST00000474825 A0A1W2PP64 1363 aa9□□□□□ -0.97
ATG4A-207ENST00000474825 CCDC184Q52MB2 194 aa9□□□□□ -0.97
ATG4A-207ENST00000474825 NLRP13Q86W25 1043 aa9□□□□□ -0.97
ATG4A-207ENST00000474825 TMC1Q8TDI8 760 aa9□□□□□ -0.97
ATG4A-207ENST00000474825 NSD3Q9BZ95 1437 aa8.99□□□□□ -0.97
ATG4A-207ENST00000474825 CGNL1Q0VF96 1302 aa8.99□□□□□ -0.97
ATG4A-207ENST00000474825 ZNF335Q9H4Z2 1342 aaPredicted RBP8.99□□□□□ -0.97
ATG4A-207ENST00000474825 CDC42BPGQ6DT37 1551 aa8.99□□□□□ -0.97
ATG4A-207ENST00000474825 INSRP06213 1382 aa8.99□□□□□ -0.97
ATG4A-207ENST00000474825 PPIP5K1Q6PFW1 1433 aa8.98□□□□□ -0.97
ATG4A-207ENST00000474825 ADGRL3Q9HAR2 1447 aa8.98□□□□□ -0.97
ATG4A-207ENST00000474825 UBAP1LF5GYI3 381 aa8.98□□□□□ -0.97
ATG4A-207ENST00000474825 HDGFL2Q7Z4V5 671 aaPredicted RBP8.98□□□□□ -0.97
ATG4A-207ENST00000474825 PNISRQ8TF01 805 aaKnown RBP8.98□□□□□ -0.97
ATG4A-207ENST00000474825 POLR3AO14802 1390 aaPredicted RBP8.98□□□□□ -0.97
ATG4A-207ENST00000474825 TOPAZ1Q8N9V7 1692 aa8.97□□□□□ -0.97
ATG4A-207ENST00000474825 EDC4Q6P2E9 1401 aaKnown RBP8.97□□□□□ -0.97
ATG4A-207ENST00000474825 SSH2Q76I76 1423 aa8.97□□□□□ -0.97
ATG4A-207ENST00000474825 IQSEC2Q5JU85 1478 aa8.97□□□□□ -0.97
ATG4A-207ENST00000474825 FYB1O15117 783 aa8.97□□□□□ -0.97
ATG4A-207ENST00000474825 PPP2R1AP30153 589 aa8.97□□□□□ -0.97
ATG4A-207ENST00000474825 CC2D1BQ5T0F9 858 aaKnown RBP8.97□□□□□ -0.97
ATG4A-207ENST00000474825 LTBP4Q8N2S1 1624 aa8.97□□□□□ -0.97
ATG4A-207ENST00000474825 TOM1O60784 492 aa8.96□□□□□ -0.98
ATG4A-207ENST00000474825 MMRN1Q13201 1228 aa8.96□□□□□ -0.98
ATG4A-207ENST00000474825 MRS2Q9HD23 443 aa8.96□□□□□ -0.98
ATG4A-207ENST00000474825 PCDHB13Q9Y5F0 798 aa8.96□□□□□ -0.98
ATG4A-207ENST00000474825 DCCP43146 1447 aa8.96□□□□□ -0.98
ATG4A-207ENST00000474825 FMN2Q9NZ56 1722 aa8.95□□□□□ -0.98
ATG4A-207ENST00000474825 TMEM121BQ9BXQ6 578 aaPredicted RBP8.95□□□□□ -0.98
ATG4A-207ENST00000474825 NALCNQ8IZF0 1738 aa8.94□□□□□ -0.98
ATG4A-207ENST00000474825 SPNS2Q8IVW8 549 aa8.94□□□□□ -0.98
ATG4A-207ENST00000474825 C19orf44Q9H6X5 657 aa8.94□□□□□ -0.98
ATG4A-207ENST00000474825 ACEP12821 1306 aa8.94□□□□□ -0.98
ATG4A-207ENST00000474825 USP6P35125 1406 aa8.94□□□□□ -0.98
ATG4A-207ENST00000474825 PROSER2Q86WR7 435 aaPredicted RBP8.93□□□□□ -0.98
ATG4A-207ENST00000474825 TMEM94Q12767 1356 aa8.93□□□□□ -0.98
ATG4A-207ENST00000474825 MON2Q7Z3U7 1717 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms