RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 L3MBTL2Q969R5 705 aa21.65■■□□□ 1.06
VARS-223ENST00000474643 PRDM11Q9NQV5 511 aa21.65■■□□□ 1.06
VARS-223ENST00000474643 BTG4Q9NY30 223 aa21.65■■□□□ 1.06
VARS-223ENST00000474643 CCDC61Q9Y6R9 512 aa21.65■■□□□ 1.06
VARS-223ENST00000474643 ALS2Q96Q42 1657 aa21.64■■□□□ 1.05
VARS-223ENST00000474643 GLI3P10071 1580 aa21.64■■□□□ 1.05
VARS-223ENST00000474643 FAM83GA6ND36 823 aa21.63■■□□□ 1.05
VARS-223ENST00000474643 SIN3AQ96ST3 1273 aa21.63■■□□□ 1.05
VARS-223ENST00000474643 SF3B2Q13435 895 aaKnown RBP21.62■■□□□ 1.05
VARS-223ENST00000474643 CCDC125Q86Z20 511 aa21.62■■□□□ 1.05
VARS-223ENST00000474643 SEPT12Q8IYM1 358 aa21.62■■□□□ 1.05
VARS-223ENST00000474643 ACEP12821 1306 aa21.61■■□□□ 1.05
VARS-223ENST00000474643 NUTM2GQ5VZR2 741 aa21.61■■□□□ 1.05
VARS-223ENST00000474643 COL14A1Q05707 1796 aaKnown RBP21.61■■□□□ 1.05
VARS-223ENST00000474643 ROCK2O75116 1388 aaKnown RBP21.6■■□□□ 1.05
VARS-223ENST00000474643 EP400Q96L91 3159 aa21.59■■□□□ 1.05
VARS-223ENST00000474643 NBPF8Q3BBV2 869 aa21.59■■□□□ 1.05
VARS-223ENST00000474643 QRICH2Q9H0J4 1663 aa21.59■■□□□ 1.05
VARS-223ENST00000474643 PPIP5K1Q6PFW1 1433 aa21.58■■□□□ 1.05
VARS-223ENST00000474643 ABTB2Q8N961 1025 aa21.58■■□□□ 1.05
VARS-223ENST00000474643 CABP2Q9NPB3 220 aa21.58■■□□□ 1.05
VARS-223ENST00000474643 TOPAZ1Q8N9V7 1692 aa21.57■■□□□ 1.04
VARS-223ENST00000474643 FAM98CQ17RN3 349 aaKnown RBP21.57■■□□□ 1.04
VARS-223ENST00000474643 POLR3AO14802 1390 aaPredicted RBP21.57■■□□□ 1.04
VARS-223ENST00000474643 ZC3H6P61129 1189 aaKnown RBP21.56■■□□□ 1.04
VARS-223ENST00000474643 KRT27Q7Z3Y8 459 aa21.56■■□□□ 1.04
VARS-223ENST00000474643 PLEKHG3A1L390 1219 aa21.55■■□□□ 1.04
VARS-223ENST00000474643 STRN4Q9NRL3 753 aa21.55■■□□□ 1.04
VARS-223ENST00000474643 ZRANB1Q9UGI0 708 aa21.55■■□□□ 1.04
VARS-223ENST00000474643 KIAA0232Q92628 1395 aa21.55■■□□□ 1.04
VARS-223ENST00000474643 EVC2Q86UK5 1308 aa21.55■■□□□ 1.04
VARS-223ENST00000474643 CHRNA2Q15822 529 aa21.54■■□□□ 1.04
VARS-223ENST00000474643 BLMP54132 1417 aaPredicted RBP21.54■■□□□ 1.04
VARS-223ENST00000474643 NRAPQ86VF7 1730 aa21.53■■□□□ 1.04
VARS-223ENST00000474643 EVA1CP58658 441 aa21.53■■□□□ 1.04
VARS-223ENST00000474643 TRPM1Q7Z4N2 1603 aa21.52■■□□□ 1.04
VARS-223ENST00000474643 PHRF1Q9P1Y6 1649 aaKnown RBP21.52■■□□□ 1.04
VARS-223ENST00000474643 BRWD3Q6RI45 1802 aa21.51■■□□□ 1.03
VARS-223ENST00000474643 ZBTB7CA1YPR0 619 aa21.51■■□□□ 1.03
VARS-223ENST00000474643 NLRP13Q86W25 1043 aa21.51■■□□□ 1.03
VARS-223ENST00000474643 CRYBG1Q9Y4K1 1723 aa21.51■■□□□ 1.03
VARS-223ENST00000474643 TONSLQ96HA7 1378 aa21.5■■□□□ 1.03
VARS-223ENST00000474643 ONECUT3O60422 494 aaPredicted RBP21.49■■□□□ 1.03
VARS-223ENST00000474643 CABP1Q9NZU7 370 aa21.49■■□□□ 1.03
VARS-223ENST00000474643 SPATA31A5Q5VU36 1347 aa21.49■■□□□ 1.03
VARS-223ENST00000474643 SPATA31A7Q8IWB4 1347 aa21.49■■□□□ 1.03
VARS-223ENST00000474643 USP35Q9P2H5 1018 aa21.47■■□□□ 1.03
VARS-223ENST00000474643 BRD4O60885 1362 aaPredicted RBP21.47■■□□□ 1.03
VARS-223ENST00000474643 NLRP6P59044 892 aa21.45■■□□□ 1.02
VARS-223ENST00000474643 CARD11Q9BXL7 1154 aa21.45■■□□□ 1.02
VARS-223ENST00000474643 NRKQ7Z2Y5 1582 aa21.44■■□□□ 1.02
VARS-223ENST00000474643 BAG6P46379 1132 aa21.44■■□□□ 1.02
VARS-223ENST00000474643 USP6P35125 1406 aa21.44■■□□□ 1.02
VARS-223ENST00000474643 GCP02774 474 aa21.43■■□□□ 1.02
VARS-223ENST00000474643 DEFB132Q7Z7B7 95 aa21.43■■□□□ 1.02
VARS-223ENST00000474643 USP19O94966 1318 aa21.42■■□□□ 1.02
VARS-223ENST00000474643 SPATA31A1Q5TZJ5 1347 aa21.42■■□□□ 1.02
VARS-223ENST00000474643 CCER1Q8TC90 406 aaPredicted RBP21.42■■□□□ 1.02
VARS-223ENST00000474643 SSH2Q76I76 1423 aa21.4■■□□□ 1.02
VARS-223ENST00000474643 CPDO75976 1380 aa21.4■■□□□ 1.02
VARS-223ENST00000474643 PDE3BQ13370 1112 aa21.39■■□□□ 1.01
VARS-223ENST00000474643 FAM182BQ5T319 152 aa21.39■■□□□ 1.01
VARS-223ENST00000474643 ZNF692Q9BU19 519 aaPredicted RBP21.39■■□□□ 1.01
VARS-223ENST00000474643 SOX12O15370 315 aa21.37■■□□□ 1.01
VARS-223ENST00000474643 LARP1Q6PKG0 1096 aaKnown RBP21.37■■□□□ 1.01
VARS-223ENST00000474643 TCP11L2Q8N4U5 519 aa21.36■■□□□ 1.01
VARS-223ENST00000474643 TMC1Q8TDI8 760 aa21.36■■□□□ 1.01
VARS-223ENST00000474643 THSD7AQ9UPZ6 1657 aa21.36■■□□□ 1.01
VARS-223ENST00000474643 KTN1Q86UP2 1357 aaKnown RBP21.36■■□□□ 1.01
VARS-223ENST00000474643 CLSPNQ9HAW4 1339 aa21.35■■□□□ 1.01
VARS-223ENST00000474643 CAMTA1Q9Y6Y1 1673 aa21.35■■□□□ 1.01
VARS-223ENST00000474643 FAM196AQ6ZSG2 479 aa21.34■■□□□ 1.01
VARS-223ENST00000474643 KCNH5Q8NCM2 988 aa21.34■■□□□ 1.01
VARS-223ENST00000474643 RGPD1P0DJD0 1748 aa21.34■■□□□ 1.01
VARS-223ENST00000474643 TTC21BQ7Z4L5 1316 aa21.33■■□□□ 1.01
VARS-223ENST00000474643 TTC21AQ8NDW8 1320 aa21.33■■□□□ 1.01
VARS-223ENST00000474643 BARGINQ6ZT62 677 aa21.33■■□□□ 1.01
VARS-223ENST00000474643 SRCAPQ6ZRS2 3230 aa21.33■■□□□ 1
VARS-223ENST00000474643 COL5A2P05997 1499 aaPredicted RBP21.32■■□□□ 1
VARS-223ENST00000474643 PIK3C2AO00443 1686 aa21.32■■□□□ 1
VARS-223ENST00000474643 TOM1L2Q6ZVM7 507 aa21.32■■□□□ 1
VARS-223ENST00000474643 THRAP3Q9Y2W1 955 aaKnown RBP21.32■■□□□ 1
VARS-223ENST00000474643 LMO7Q8WWI1 1683 aa21.31■■□□□ 1
VARS-223ENST00000474643 SLIT3O75094 1523 aa21.31■■□□□ 1
VARS-223ENST00000474643 HDGFL2Q7Z4V5 671 aaPredicted RBP21.31■■□□□ 1
VARS-223ENST00000474643 SBNO2Q9Y2G9 1366 aa21.31■■□□□ 1
VARS-223ENST00000474643 CSB-PGBD3P0DP91 1061 aa21.3■■□□□ 1
VARS-223ENST00000474643 EN1Q05925 392 aaPredicted RBP21.3■■□□□ 1
VARS-223ENST00000474643 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.3■■□□□ 1
VARS-223ENST00000474643 AATKQ6ZMQ8 1374 aa21.3■■□□□ 1
VARS-223ENST00000474643 CRB1P82279 1406 aa21.29■■□□□ 1
VARS-223ENST00000474643 AKAP12Q02952 1782 aa21.29■■□□□ 1
VARS-223ENST00000474643 TRIM37O94972 964 aa21.29■■□□□ 1
VARS-223ENST00000474643 TERF2IPQ9NYB0 399 aa21.27■■□□□ 1
VARS-223ENST00000474643 CPSF1Q10570 1443 aaKnown RBP21.27■■□□□ 1
VARS-223ENST00000474643 APBA3O96018 575 aa21.26■□□□□ 0.99
VARS-223ENST00000474643 PSDA5PKW4 1024 aaPredicted RBP21.25■□□□□ 0.99
VARS-223ENST00000474643 SLC24A1O60721 1099 aa21.24■□□□□ 0.99
VARS-223ENST00000474643 C11orf95C9JLR9 678 aaPredicted RBP21.23■□□□□ 0.99
VARS-223ENST00000474643 DDB1Q16531 1140 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms