RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 KCNH2Q12809 1159 aa6.65□□□□□ -1.34
CCDC39-203ENST00000473854 SYMPKQ92797 1274 aaKnown RBP6.65□□□□□ -1.34
CCDC39-203ENST00000473854 KRTAP9-2Q9BYQ4 174 aa6.65□□□□□ -1.34
CCDC39-203ENST00000473854 GPCPD1Q9NPB8 672 aa6.65□□□□□ -1.34
CCDC39-203ENST00000473854 SPDYE5A6NIY4 337 aa6.64□□□□□ -1.35
CCDC39-203ENST00000473854 IRF6O14896 467 aa6.64□□□□□ -1.35
CCDC39-203ENST00000473854 PPFIA3O75145 1194 aa6.64□□□□□ -1.35
CCDC39-203ENST00000473854 GSK3AP49840 483 aa6.64□□□□□ -1.35
CCDC39-203ENST00000473854 LINC01559Q495D7 138 aa6.64□□□□□ -1.35
CCDC39-203ENST00000473854 DESI1Q6ICB0 168 aa6.64□□□□□ -1.35
CCDC39-203ENST00000473854 BAP1Q92560 729 aa6.64□□□□□ -1.35
CCDC39-203ENST00000473854 MINK1Q8N4C8 1332 aaPredicted RBP6.64□□□□□ -1.35
CCDC39-203ENST00000473854 TULP1O00294 542 aaPredicted RBP6.63□□□□□ -1.35
CCDC39-203ENST00000473854 KRTAP9-6A0A140TA67 174 aa6.62□□□□□ -1.35
CCDC39-203ENST00000473854 SOBPA7XYQ1 873 aa6.62□□□□□ -1.35
CCDC39-203ENST00000473854 FOXK2Q01167 660 aa6.62□□□□□ -1.35
CCDC39-203ENST00000473854 NR5A1Q13285 461 aa6.62□□□□□ -1.35
CCDC39-203ENST00000473854 KRI1Q8N9T8 703 aaKnown RBP6.62□□□□□ -1.35
CCDC39-203ENST00000473854 CDK15Q96Q40 435 aa6.62□□□□□ -1.35
CCDC39-203ENST00000473854 KLF16Q9BXK1 252 aaPredicted RBP6.62□□□□□ -1.35
CCDC39-203ENST00000473854 FAM217BQ9NTX9 383 aaPredicted RBP6.62□□□□□ -1.35
CCDC39-203ENST00000473854 DNMT3AQ9Y6K1 912 aaPredicted RBP6.62□□□□□ -1.35
CCDC39-203ENST00000473854 SPTLC1O15269 473 aa6.61□□□□□ -1.35
CCDC39-203ENST00000473854 ZIC2O95409 532 aaPredicted RBP6.61□□□□□ -1.35
CCDC39-203ENST00000473854 ADAMTS8Q9UP79 889 aa6.61□□□□□ -1.35
CCDC39-203ENST00000473854 BMP2P12643 396 aa6.6□□□□□ -1.35
CCDC39-203ENST00000473854 C6orf118Q5T5N4 469 aa6.6□□□□□ -1.35
CCDC39-203ENST00000473854 KRTAP1-3Q8IUG1 177 aa6.6□□□□□ -1.35
CCDC39-203ENST00000473854 KANK3Q6NY19 840 aa6.59□□□□□ -1.35
CCDC39-203ENST00000473854 LINC00528Q8N1L1 170 aa6.59□□□□□ -1.35
CCDC39-203ENST00000473854 PRR7Q8TB68 274 aa6.59□□□□□ -1.35
CCDC39-203ENST00000473854 PSMG3-AS1Q96PY0 264 aa6.59□□□□□ -1.35
CCDC39-203ENST00000473854 RTN4Q9NQC3 1192 aaKnown RBP6.59□□□□□ -1.35
CCDC39-203ENST00000473854 MTMR2Q13614 643 aa6.58□□□□□ -1.36
CCDC39-203ENST00000473854 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.58□□□□□ -1.36
CCDC39-203ENST00000473854 PCDHGC3Q9UN70 934 aa6.58□□□□□ -1.36
CCDC39-203ENST00000473854 SOS2Q07890 1332 aaPredicted RBP6.57□□□□□ -1.36
CCDC39-203ENST00000473854 CTHP32929 405 aa6.57□□□□□ -1.36
CCDC39-203ENST00000473854 ARID5BQ14865 1188 aa6.57□□□□□ -1.36
CCDC39-203ENST00000473854 MEIOBQ8N635 442 aa6.57□□□□□ -1.36
CCDC39-203ENST00000473854 ITPKCQ96DU7 683 aa6.57□□□□□ -1.36
CCDC39-203ENST00000473854 CNTNAP3BQ96NU0 1288 aa6.57□□□□□ -1.36
CCDC39-203ENST00000473854 TSEN34Q9BSV6 310 aaKnown RBP6.57□□□□□ -1.36
CCDC39-203ENST00000473854 CNTNAP3Q9BZ76 1288 aa6.57□□□□□ -1.36
CCDC39-203ENST00000473854 ZFAND3Q9H8U3 227 aa6.57□□□□□ -1.36
CCDC39-203ENST00000473854 GPAT2Q6NUI2 795 aa6.56□□□□□ -1.36
CCDC39-203ENST00000473854 SVOPQ8N4V2 548 aa6.56□□□□□ -1.36
CCDC39-203ENST00000473854 NANOS1Q8WY41 292 aaKnown RBP6.56□□□□□ -1.36
CCDC39-203ENST00000473854 CCDC102AQ96A19 550 aa6.56□□□□□ -1.36
CCDC39-203ENST00000473854 BPHLQ86WA6 291 aaPredicted RBP6.55□□□□□ -1.36
CCDC39-203ENST00000473854 SCARF2Q96GP6 870 aaPredicted RBP6.55□□□□□ -1.36
CCDC39-203ENST00000473854 GJA5P36382 358 aa6.54□□□□□ -1.36
CCDC39-203ENST00000473854 MARSP56192 900 aaKnown RBP6.54□□□□□ -1.36
CCDC39-203ENST00000473854 AGERQ15109 404 aa6.54□□□□□ -1.36
CCDC39-203ENST00000473854 DNMT3LQ9UJW3 386 aa6.54□□□□□ -1.36
CCDC39-203ENST00000473854 IRS1P35568 1242 aa6.53□□□□□ -1.36
CCDC39-203ENST00000473854 KRT76Q01546 638 aa6.53□□□□□ -1.36
CCDC39-203ENST00000473854 DIXDC1Q155Q3 683 aa6.53□□□□□ -1.36
CCDC39-203ENST00000473854 LYPD8Q6UX82 237 aa6.53□□□□□ -1.36
CCDC39-203ENST00000473854 SPIRE2Q8WWL2 714 aa6.53□□□□□ -1.36
CCDC39-203ENST00000473854 COL25A1Q9BXS0 654 aaPredicted RBP6.53□□□□□ -1.36
CCDC39-203ENST00000473854 EMILIN1Q9Y6C2 1016 aa6.53□□□□□ -1.36
CCDC39-203ENST00000473854 TTLL8A6PVC2 850 aa6.52□□□□□ -1.37
CCDC39-203ENST00000473854 NR3C2P08235 984 aa6.52□□□□□ -1.37
CCDC39-203ENST00000473854 ZNF385CQ66K41 422 aaPredicted RBP6.52□□□□□ -1.37
CCDC39-203ENST00000473854 ARMC2Q8NEN0 867 aa6.52□□□□□ -1.37
CCDC39-203ENST00000473854 FOXJ1Q92949 421 aa6.52□□□□□ -1.37
CCDC39-203ENST00000473854 MAP4K5Q9Y4K4 846 aa6.52□□□□□ -1.37
CCDC39-203ENST00000473854 SLURP2P0DP57 97 aa6.51□□□□□ -1.37
CCDC39-203ENST00000473854 GRM5P41594 1212 aa6.51□□□□□ -1.37
CCDC39-203ENST00000473854 PTSQ03393 145 aa6.51□□□□□ -1.37
CCDC39-203ENST00000473854 MOXD2PA6NHM9 499 aa6.5□□□□□ -1.37
CCDC39-203ENST00000473854 SSTR3P32745 418 aaPredicted RBP6.5□□□□□ -1.37
CCDC39-203ENST00000473854 GPR161Q8N6U8 529 aaKnown RBP6.5□□□□□ -1.37
CCDC39-203ENST00000473854 NDUFV2P19404 249 aa6.49□□□□□ -1.37
CCDC39-203ENST00000473854 FSHRP23945 695 aa6.49□□□□□ -1.37
CCDC39-203ENST00000473854 MAP3K10Q02779 954 aa6.49□□□□□ -1.37
CCDC39-203ENST00000473854 ARHGEF15O94989 841 aa6.48□□□□□ -1.37
CCDC39-203ENST00000473854 F12P00748 615 aaPredicted RBP6.48□□□□□ -1.37
CCDC39-203ENST00000473854 NBPF14Q5TI25 921 aa6.48□□□□□ -1.37
CCDC39-203ENST00000473854 SV2AQ7L0J3 742 aa6.48□□□□□ -1.37
CCDC39-203ENST00000473854 CCDC116Q8IYX3 515 aa6.48□□□□□ -1.37
CCDC39-203ENST00000473854 CCDC155Q8N6L0 562 aa6.48□□□□□ -1.37
CCDC39-203ENST00000473854 ENAMQ9NRM1 1142 aa6.48□□□□□ -1.37
CCDC39-203ENST00000473854 PGPEP1Q9NXJ5 209 aa6.48□□□□□ -1.37
CCDC39-203ENST00000473854 VASH1Q7L8A9 365 aaPredicted RBP6.47□□□□□ -1.37
CCDC39-203ENST00000473854 TRMT44Q8IYL2 757 aaKnown RBP6.47□□□□□ -1.37
CCDC39-203ENST00000473854 C1QTNF2Q9BXJ5 285 aa6.47□□□□□ -1.37
CCDC39-203ENST00000473854 ZBTB3Q9H5J0 574 aa6.47□□□□□ -1.37
CCDC39-203ENST00000473854 PHF20L1A8MW92 1017 aa6.46□□□□□ -1.38
CCDC39-203ENST00000473854 ITGA6P23229 1130 aa6.46□□□□□ -1.38
CCDC39-203ENST00000473854 TTLL12Q14166 644 aaPredicted RBP6.46□□□□□ -1.38
CCDC39-203ENST00000473854 MAP10Q9P2G4 905 aa6.46□□□□□ -1.38
CCDC39-203ENST00000473854 SLC35F4A4IF30 521 aa6.45□□□□□ -1.38
CCDC39-203ENST00000473854 MSTNO14793 375 aa6.45□□□□□ -1.38
CCDC39-203ENST00000473854 SPINT1O43278 529 aa6.45□□□□□ -1.38
CCDC39-203ENST00000473854 C4orf48Q5BLP8 95 aa6.45□□□□□ -1.38
CCDC39-203ENST00000473854 RNFT1Q5M7Z0 435 aa6.45□□□□□ -1.38
CCDC39-203ENST00000473854 PRPF38BQ5VTL8 546 aaKnown RBP6.45□□□□□ -1.38
CCDC39-203ENST00000473854 CDC14CA4D256 554 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms