RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 NGDNQ8NEJ9 315 aaKnown RBP27.22■■□□□ 1.95
CCDC88B-206ENST00000473405 CDK19Q9BWU1 502 aa27.22■■□□□ 1.95
CCDC88B-206ENST00000473405 FAM83GA6ND36 823 aa27.2■■□□□ 1.94
CCDC88B-206ENST00000473405 POLR3AO14802 1390 aaPredicted RBP27.2■■□□□ 1.94
CCDC88B-206ENST00000473405 VPS72Q15906 364 aa27.19■■□□□ 1.94
CCDC88B-206ENST00000473405 L3MBTL2Q969R5 705 aa27.19■■□□□ 1.94
CCDC88B-206ENST00000473405 SIN3AQ96ST3 1273 aa27.16■■□□□ 1.94
CCDC88B-206ENST00000473405 PAK3O75914 559 aaPredicted RBP27.15■■□□□ 1.94
CCDC88B-206ENST00000473405 CENPJQ9HC77 1338 aaPredicted RBP27.15■■□□□ 1.94
CCDC88B-206ENST00000473405 CCDC61Q9Y6R9 512 aa27.13■■□□□ 1.93
CCDC88B-206ENST00000473405 ACEP12821 1306 aa27.13■■□□□ 1.93
CCDC88B-206ENST00000473405 NRKQ7Z2Y5 1582 aa27.11■■□□□ 1.93
CCDC88B-206ENST00000473405 PLEKHG3A1L390 1219 aa27.11■■□□□ 1.93
CCDC88B-206ENST00000473405 BTG4Q9NY30 223 aa27.11■■□□□ 1.93
CCDC88B-206ENST00000473405 PPIP5K1Q6PFW1 1433 aa27.1■■□□□ 1.93
CCDC88B-206ENST00000473405 ONECUT3O60422 494 aaPredicted RBP27.09■■□□□ 1.93
CCDC88B-206ENST00000473405 SEPT12Q8IYM1 358 aa27.09■■□□□ 1.93
CCDC88B-206ENST00000473405 NBPF8Q3BBV2 869 aa27.08■■□□□ 1.93
CCDC88B-206ENST00000473405 CCDC9Q9Y3X0 531 aaKnown RBP27.08■■□□□ 1.93
CCDC88B-206ENST00000473405 THSD7AQ9UPZ6 1657 aa27.06■■□□□ 1.92
CCDC88B-206ENST00000473405 SRPK2P78362 688 aaKnown RBP27.06■■□□□ 1.92
CCDC88B-206ENST00000473405 NEUROD1Q13562 356 aa27.06■■□□□ 1.92
CCDC88B-206ENST00000473405 KIAA0232Q92628 1395 aa27.06■■□□□ 1.92
CCDC88B-206ENST00000473405 CABP2Q9NPB3 220 aa27.05■■□□□ 1.92
CCDC88B-206ENST00000473405 NUTM2GQ5VZR2 741 aa27.04■■□□□ 1.92
CCDC88B-206ENST00000473405 CCDC125Q86Z20 511 aa27.04■■□□□ 1.92
CCDC88B-206ENST00000473405 PRDM11Q9NQV5 511 aa27.04■■□□□ 1.92
CCDC88B-206ENST00000473405 ROCK2O75116 1388 aaKnown RBP27.03■■□□□ 1.92
CCDC88B-206ENST00000473405 BLMP54132 1417 aaPredicted RBP27.03■■□□□ 1.92
CCDC88B-206ENST00000473405 LMO7Q8WWI1 1683 aa27.02■■□□□ 1.92
CCDC88B-206ENST00000473405 USP19O94966 1318 aa27■■□□□ 1.91
CCDC88B-206ENST00000473405 SPATA31A5Q5VU36 1347 aa27■■□□□ 1.91
CCDC88B-206ENST00000473405 SPATA31A7Q8IWB4 1347 aa27■■□□□ 1.91
CCDC88B-206ENST00000473405 FAM98CQ17RN3 349 aaKnown RBP27■■□□□ 1.91
CCDC88B-206ENST00000473405 AKAP12Q02952 1782 aa26.99■■□□□ 1.91
CCDC88B-206ENST00000473405 USP6P35125 1406 aa26.99■■□□□ 1.91
CCDC88B-206ENST00000473405 PIK3C2AO00443 1686 aa26.98■■□□□ 1.91
CCDC88B-206ENST00000473405 CHRNA2Q15822 529 aa26.98■■□□□ 1.91
CCDC88B-206ENST00000473405 KRT27Q7Z3Y8 459 aa26.98■■□□□ 1.91
CCDC88B-206ENST00000473405 ZC3H6P61129 1189 aaKnown RBP26.97■■□□□ 1.91
CCDC88B-206ENST00000473405 ABTB2Q8N961 1025 aa26.97■■□□□ 1.91
CCDC88B-206ENST00000473405 BRD4O60885 1362 aaPredicted RBP26.96■■□□□ 1.91
CCDC88B-206ENST00000473405 CPDO75976 1380 aa26.96■■□□□ 1.91
CCDC88B-206ENST00000473405 CAMTA1Q9Y6Y1 1673 aa26.95■■□□□ 1.91
CCDC88B-206ENST00000473405 EVC2Q86UK5 1308 aa26.94■■□□□ 1.9
CCDC88B-206ENST00000473405 SSH2Q76I76 1423 aa26.94■■□□□ 1.9
CCDC88B-206ENST00000473405 A0A0G2JS52 829 aa26.94■■□□□ 1.9
CCDC88B-206ENST00000473405 MYT1Q01538 1121 aa26.94■■□□□ 1.9
CCDC88B-206ENST00000473405 CABP1Q9NZU7 370 aa26.94■■□□□ 1.9
CCDC88B-206ENST00000473405 SLIT3O75094 1523 aa26.93■■□□□ 1.9
CCDC88B-206ENST00000473405 SPATA31A1Q5TZJ5 1347 aa26.92■■□□□ 1.9
CCDC88B-206ENST00000473405 RGPD1P0DJD0 1748 aa26.92■■□□□ 1.9
CCDC88B-206ENST00000473405 TNS1Q9HBL0 1735 aaKnown RBP26.9■■□□□ 1.9
CCDC88B-206ENST00000473405 DEFB132Q7Z7B7 95 aa26.89■■□□□ 1.9
CCDC88B-206ENST00000473405 STRN4Q9NRL3 753 aa26.89■■□□□ 1.9
CCDC88B-206ENST00000473405 MON2Q7Z3U7 1717 aa26.88■■□□□ 1.89
CCDC88B-206ENST00000473405 SBNO2Q9Y2G9 1366 aa26.88■■□□□ 1.89
CCDC88B-206ENST00000473405 NLRP13Q86W25 1043 aa26.88■■□□□ 1.89
CCDC88B-206ENST00000473405 GCP02774 474 aa26.87■■□□□ 1.89
CCDC88B-206ENST00000473405 ZRANB1Q9UGI0 708 aa26.86■■□□□ 1.89
CCDC88B-206ENST00000473405 COL5A2P05997 1499 aaPredicted RBP26.86■■□□□ 1.89
CCDC88B-206ENST00000473405 COL18A1P39060 1754 aa26.85■■□□□ 1.89
CCDC88B-206ENST00000473405 TONSLQ96HA7 1378 aa26.84■■□□□ 1.89
CCDC88B-206ENST00000473405 FAM182BQ5T319 152 aa26.84■■□□□ 1.89
CCDC88B-206ENST00000473405 CPSF1Q10570 1443 aaKnown RBP26.83■■□□□ 1.89
CCDC88B-206ENST00000473405 SF3B2Q13435 895 aaKnown RBP26.83■■□□□ 1.89
CCDC88B-206ENST00000473405 PARP4Q9UKK3 1724 aaKnown RBP26.82■■□□□ 1.88
CCDC88B-206ENST00000473405 NLRP6P59044 892 aa26.81■■□□□ 1.88
CCDC88B-206ENST00000473405 LARP1Q6PKG0 1096 aaKnown RBP26.81■■□□□ 1.88
CCDC88B-206ENST00000473405 CARD11Q9BXL7 1154 aa26.8■■□□□ 1.88
CCDC88B-206ENST00000473405 USP35Q9P2H5 1018 aa26.8■■□□□ 1.88
CCDC88B-206ENST00000473405 USP54Q70EL1 1684 aa26.79■■□□□ 1.88
CCDC88B-206ENST00000473405 WNK3Q9BYP7 1800 aa26.79■■□□□ 1.88
CCDC88B-206ENST00000473405 EVA1CP58658 441 aa26.79■■□□□ 1.88
CCDC88B-206ENST00000473405 BARGINQ6ZT62 677 aa26.79■■□□□ 1.88
CCDC88B-206ENST00000473405 TTC21BQ7Z4L5 1316 aa26.78■■□□□ 1.88
CCDC88B-206ENST00000473405 AATKQ6ZMQ8 1374 aa26.78■■□□□ 1.88
CCDC88B-206ENST00000473405 CD163L1Q9NR16 1453 aa26.78■■□□□ 1.88
CCDC88B-206ENST00000473405 RGPD5Q99666 1765 aa26.78■■□□□ 1.88
CCDC88B-206ENST00000473405 NFAT5O94916 1531 aa26.77■■□□□ 1.88
CCDC88B-206ENST00000473405 DISP2A7MBM2 1401 aa26.76■■□□□ 1.87
CCDC88B-206ENST00000473405 TRIM26Q12899 539 aaPredicted RBP26.76■■□□□ 1.87
CCDC88B-206ENST00000473405 ZNF692Q9BU19 519 aaPredicted RBP26.76■■□□□ 1.87
CCDC88B-206ENST00000473405 CRB1P82279 1406 aa26.75■■□□□ 1.87
CCDC88B-206ENST00000473405 KTN1Q86UP2 1357 aaKnown RBP26.75■■□□□ 1.87
CCDC88B-206ENST00000473405 TTC21AQ8NDW8 1320 aa26.74■■□□□ 1.87
CCDC88B-206ENST00000473405 BAG6P46379 1132 aa26.74■■□□□ 1.87
CCDC88B-206ENST00000473405 TCP11L2Q8N4U5 519 aa26.74■■□□□ 1.87
CCDC88B-206ENST00000473405 LRRC37A3O60309 1634 aa26.74■■□□□ 1.87
CCDC88B-206ENST00000473405 ZBTB7CA1YPR0 619 aa26.71■■□□□ 1.87
CCDC88B-206ENST00000473405 THRAP3Q9Y2W1 955 aaKnown RBP26.71■■□□□ 1.87
CCDC88B-206ENST00000473405 PEAK1Q9H792 1746 aa26.7■■□□□ 1.87
CCDC88B-206ENST00000473405 FAM196AQ6ZSG2 479 aa26.69■■□□□ 1.86
CCDC88B-206ENST00000473405 ABCC6O95255 1503 aa26.69■■□□□ 1.86
CCDC88B-206ENST00000473405 EN1Q05925 392 aaPredicted RBP26.68■■□□□ 1.86
CCDC88B-206ENST00000473405 ARHGEF25Q86VW2 580 aa26.68■■□□□ 1.86
CCDC88B-206ENST00000473405 AXIN2Q9Y2T1 843 aa26.68■■□□□ 1.86
CCDC88B-206ENST00000473405 RREB1Q92766 1687 aa26.68■■□□□ 1.86
CCDC88B-206ENST00000473405 LTN1O94822 1766 aa26.68■■□□□ 1.86
CCDC88B-206ENST00000473405 LRP5O75197 1615 aa26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms