RNA–Protein interactions for RNA: ENST00000472442.2

SCAMP4-207, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 2

Gene SCAMP4, Length 2,973 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-207ENST00000472442 HDGFL2Q7Z4V5 671 aaPredicted RBP17.13■□□□□ 0.33
SCAMP4-207ENST00000472442 GOLGA2Q08379 1002 aa17.13■□□□□ 0.33
SCAMP4-207ENST00000472442 MED14O60244 1454 aa17.12■□□□□ 0.33
SCAMP4-207ENST00000472442 ROBO2Q9HCK4 1378 aa17.12■□□□□ 0.33
SCAMP4-207ENST00000472442 KDM2BQ8NHM5 1336 aa17.11■□□□□ 0.33
SCAMP4-207ENST00000472442 SPINK5Q9NQ38 1064 aaPredicted RBP17.11■□□□□ 0.33
SCAMP4-207ENST00000472442 ANKRD26Q9UPS8 1709 aa17.11■□□□□ 0.33
SCAMP4-207ENST00000472442 SLFN5Q08AF3 891 aa17.1■□□□□ 0.33
SCAMP4-207ENST00000472442 ATP7BP35670 1465 aa17.1■□□□□ 0.33
SCAMP4-207ENST00000472442 ARHGAP23Q9P227 1491 aa17.1■□□□□ 0.33
SCAMP4-207ENST00000472442 SLIT1O75093 1534 aa17.1■□□□□ 0.33
SCAMP4-207ENST00000472442 EIF5BO60841 1220 aaKnown RBP17.1■□□□□ 0.33
SCAMP4-207ENST00000472442 TRMT2AQ8IZ69 625 aaKnown RBP17.1■□□□□ 0.33
SCAMP4-207ENST00000472442 DMRT2Q9Y5R5 561 aa17.1■□□□□ 0.33
SCAMP4-207ENST00000472442 NCKAP5LQ9HCH0 1330 aa17.09■□□□□ 0.33
SCAMP4-207ENST00000472442 CFAP53Q96M91 514 aa17.09■□□□□ 0.33
SCAMP4-207ENST00000472442 SLC26A8Q96RN1 970 aa17.09■□□□□ 0.33
SCAMP4-207ENST00000472442 CPSF1Q10570 1443 aaKnown RBP17.08■□□□□ 0.33
SCAMP4-207ENST00000472442 PPIP5K1Q6PFW1 1433 aa17.08■□□□□ 0.33
SCAMP4-207ENST00000472442 FRAT2O75474 233 aaPredicted RBP17.08■□□□□ 0.33
SCAMP4-207ENST00000472442 FAM161AQ3B820 660 aa17.08■□□□□ 0.33
SCAMP4-207ENST00000472442 PTPRUQ92729 1446 aa17.08■□□□□ 0.32
SCAMP4-207ENST00000472442 C8orf34Q49A92 452 aa17.08■□□□□ 0.32
SCAMP4-207ENST00000472442 UBE2Q2Q8WVN8 375 aa17.08■□□□□ 0.32
SCAMP4-207ENST00000472442 CENPQQ7L2Z9 268 aaPredicted RBP17.07■□□□□ 0.32
SCAMP4-207ENST00000472442 NUDT16Q96DE0 195 aaKnown RBP17.07■□□□□ 0.32
SCAMP4-207ENST00000472442 RUNDC1Q96C34 613 aa17.07■□□□□ 0.32
SCAMP4-207ENST00000472442 EID1Q9Y6B2 187 aa17.07■□□□□ 0.32
SCAMP4-207ENST00000472442 KIF20BQ96Q89 1820 aa17.07■□□□□ 0.32
SCAMP4-207ENST00000472442 IQSEC2Q5JU85 1478 aa17.07■□□□□ 0.32
SCAMP4-207ENST00000472442 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.07■□□□□ 0.32
SCAMP4-207ENST00000472442 COL3A1P02461 1466 aaPredicted RBP17.06■□□□□ 0.32
SCAMP4-207ENST00000472442 NGEFQ8N5V2 710 aa17.06■□□□□ 0.32
SCAMP4-207ENST00000472442 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.06■□□□□ 0.32
SCAMP4-207ENST00000472442 WWC1Q8IX03 1113 aa17.05■□□□□ 0.32
SCAMP4-207ENST00000472442 PRR36Q9H6K5 1346 aa17.05■□□□□ 0.32
SCAMP4-207ENST00000472442 TCP11L2Q8N4U5 519 aa17.04■□□□□ 0.32
SCAMP4-207ENST00000472442 CCDC61Q9Y6R9 512 aa17.04■□□□□ 0.32
SCAMP4-207ENST00000472442 THEMISQ8N1K5 641 aaPredicted RBP17.04■□□□□ 0.32
SCAMP4-207ENST00000472442 RRP7AQ9Y3A4 280 aaKnown RBP17.04■□□□□ 0.32
SCAMP4-207ENST00000472442 U2AF1L5P0DN76 240 aaPredicted RBP17.03■□□□□ 0.32
SCAMP4-207ENST00000472442 FBLN1P23142 703 aa17.03■□□□□ 0.32
SCAMP4-207ENST00000472442 U2AF1Q01081 240 aaKnown RBP eCLIP17.03■□□□□ 0.32
SCAMP4-207ENST00000472442 PHF23Q9BUL5 403 aaPredicted RBP17.03■□□□□ 0.32
SCAMP4-207ENST00000472442 CDC42BPGQ6DT37 1551 aa17.02■□□□□ 0.32
SCAMP4-207ENST00000472442 RGS3P49796 1198 aa17.02■□□□□ 0.32
SCAMP4-207ENST00000472442 EDC4Q6P2E9 1401 aaKnown RBP17.02■□□□□ 0.32
SCAMP4-207ENST00000472442 PNPLA6Q8IY17 1366 aa17.02■□□□□ 0.32
SCAMP4-207ENST00000472442 E9PSI1 815 aa17.02■□□□□ 0.31
SCAMP4-207ENST00000472442 NEUROD2Q15784 382 aa17.02■□□□□ 0.31
SCAMP4-207ENST00000472442 TBX22Q9Y458 520 aa17.02■□□□□ 0.31
SCAMP4-207ENST00000472442 ADGRB2O60241 1585 aa17.02■□□□□ 0.31
SCAMP4-207ENST00000472442 AMOTL2Q9Y2J4 779 aa17.01■□□□□ 0.31
SCAMP4-207ENST00000472442 NKTRP30414 1462 aaKnown RBP17■□□□□ 0.31
SCAMP4-207ENST00000472442 NME9Q86XW9 330 aa17■□□□□ 0.31
SCAMP4-207ENST00000472442 MON2Q7Z3U7 1717 aa17■□□□□ 0.31
SCAMP4-207ENST00000472442 ZRANB1Q9UGI0 708 aa17■□□□□ 0.31
SCAMP4-207ENST00000472442 PLEKHF1Q96S99 279 aa16.99■□□□□ 0.31
SCAMP4-207ENST00000472442 POLKQ9UBT6 870 aa16.99■□□□□ 0.31
SCAMP4-207ENST00000472442 RIMS1Q86UR5 1692 aaKnown RBP16.99■□□□□ 0.31
SCAMP4-207ENST00000472442 AKAP12Q02952 1782 aa16.98■□□□□ 0.31
SCAMP4-207ENST00000472442 CEP170BQ9Y4F5 1589 aaPredicted RBP16.98■□□□□ 0.31
SCAMP4-207ENST00000472442 U2SURPO15042 1029 aaKnown RBP16.98■□□□□ 0.31
SCAMP4-207ENST00000472442 FAM43AQ8N2R8 423 aa16.98■□□□□ 0.31
SCAMP4-207ENST00000472442 CCDC27Q2M243 656 aa16.97■□□□□ 0.31
SCAMP4-207ENST00000472442 NUTM2FA1L443 756 aa16.97■□□□□ 0.31
SCAMP4-207ENST00000472442 DIAPH1O60610 1272 aaKnown RBP16.96■□□□□ 0.31
SCAMP4-207ENST00000472442 PTCH1Q13635 1447 aa16.96■□□□□ 0.31
SCAMP4-207ENST00000472442 TOPAZ1Q8N9V7 1692 aa16.96■□□□□ 0.31
SCAMP4-207ENST00000472442 DIP2AQ14689 1571 aa16.95■□□□□ 0.3
SCAMP4-207ENST00000472442 ITSN1Q15811 1721 aa16.95■□□□□ 0.3
SCAMP4-207ENST00000472442 MAP2P11137 1827 aaKnown RBP16.95■□□□□ 0.3
SCAMP4-207ENST00000472442 NCBP3Q53F19 620 aaKnown RBP16.95■□□□□ 0.3
SCAMP4-207ENST00000472442 ZNF692Q9BU19 519 aaPredicted RBP16.95■□□□□ 0.3
SCAMP4-207ENST00000472442 RSPH6AQ9H0K4 717 aa16.95■□□□□ 0.3
SCAMP4-207ENST00000472442 WDR63Q8IWG1 891 aa16.94■□□□□ 0.3
SCAMP4-207ENST00000472442 PLEKHG3A1L390 1219 aa16.94■□□□□ 0.3
SCAMP4-207ENST00000472442 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.94■□□□□ 0.3
SCAMP4-207ENST00000472442 EMILIN1Q9Y6C2 1016 aa16.94■□□□□ 0.3
SCAMP4-207ENST00000472442 ADAMTSL3P82987 1691 aa16.93■□□□□ 0.3
SCAMP4-207ENST00000472442 ACEP12821 1306 aa16.93■□□□□ 0.3
SCAMP4-207ENST00000472442 BCAR3O75815 825 aa16.93■□□□□ 0.3
SCAMP4-207ENST00000472442 XRN1Q8IZH2 1706 aaKnown RBP16.93■□□□□ 0.3
SCAMP4-207ENST00000472442 DNAJC5Q9H3Z4 198 aa16.92■□□□□ 0.3
SCAMP4-207ENST00000472442 AATKQ6ZMQ8 1374 aa16.92■□□□□ 0.3
SCAMP4-207ENST00000472442 NRKQ7Z2Y5 1582 aa16.92■□□□□ 0.3
SCAMP4-207ENST00000472442 TMPOP42166 694 aaKnown RBP16.91■□□□□ 0.3
SCAMP4-207ENST00000472442 COG3Q96JB2 828 aa16.91■□□□□ 0.3
SCAMP4-207ENST00000472442 TTC21BQ7Z4L5 1316 aa16.9■□□□□ 0.3
SCAMP4-207ENST00000472442 KCNA6P17658 529 aa16.9■□□□□ 0.3
SCAMP4-207ENST00000472442 TRIM35Q9UPQ4 493 aa16.9■□□□□ 0.3
SCAMP4-207ENST00000472442 USP6P35125 1406 aa16.89■□□□□ 0.29
SCAMP4-207ENST00000472442 RRS1Q15050 365 aaKnown RBP16.89■□□□□ 0.29
SCAMP4-207ENST00000472442 USP19O94966 1318 aa16.88■□□□□ 0.29
SCAMP4-207ENST00000472442 CDK12Q9NYV4 1490 aaPredicted RBP16.88■□□□□ 0.29
SCAMP4-207ENST00000472442 LRRC7Q96NW7 1537 aa16.88■□□□□ 0.29
SCAMP4-207ENST00000472442 ZNF142P52746 1687 aaPredicted RBP16.88■□□□□ 0.29
SCAMP4-207ENST00000472442 FCHSD2O94868 740 aa16.88■□□□□ 0.29
SCAMP4-207ENST00000472442 IL13P35225 146 aa16.88■□□□□ 0.29
SCAMP4-207ENST00000472442 SSH2Q76I76 1423 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms