RNA–Protein interactions for RNA: ENST00000472282.5

SMC4-213, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 667 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-213ENST00000472282 MMRN1Q13201 1228 aa13.5□□□□□ -0.25
SMC4-213ENST00000472282 BRINP3Q76B58 766 aa13.5□□□□□ -0.25
SMC4-213ENST00000472282 SPOCK2Q92563 424 aa13.5□□□□□ -0.25
SMC4-213ENST00000472282 JCADQ9P266 1359 aa13.49□□□□□ -0.25
SMC4-213ENST00000472282 RPGRIP1LQ68CZ1 1315 aa13.49□□□□□ -0.25
SMC4-213ENST00000472282 ADGRF5Q8IZF2 1346 aa13.49□□□□□ -0.25
SMC4-213ENST00000472282 VGFO15240 615 aaPredicted RBP13.49□□□□□ -0.25
SMC4-213ENST00000472282 IRX5P78411 483 aaPredicted RBP13.49□□□□□ -0.25
SMC4-213ENST00000472282 PTCH1Q13635 1447 aa13.48□□□□□ -0.25
SMC4-213ENST00000472282 KNDC1Q76NI1 1749 aa13.48□□□□□ -0.25
SMC4-213ENST00000472282 ACIN1Q9UKV3 1341 aaKnown RBP13.48□□□□□ -0.25
SMC4-213ENST00000472282 OCEL1Q9H607 264 aa13.48□□□□□ -0.25
SMC4-213ENST00000472282 PRAG1Q86YV5 1406 aa13.47□□□□□ -0.25
SMC4-213ENST00000472282 GOLGA2Q08379 1002 aa13.47□□□□□ -0.25
SMC4-213ENST00000472282 RGL3Q3MIN7 710 aa13.47□□□□□ -0.25
SMC4-213ENST00000472282 POTEAQ6S8J7 498 aa13.47□□□□□ -0.25
SMC4-213ENST00000472282 LAMC1P11047 1609 aa13.46□□□□□ -0.25
SMC4-213ENST00000472282 HRCP23327 699 aa13.46□□□□□ -0.25
SMC4-213ENST00000472282 DDX17Q92841 729 aaKnown RBP13.46□□□□□ -0.25
SMC4-213ENST00000472282 SPNS2Q8IVW8 549 aa13.45□□□□□ -0.26
SMC4-213ENST00000472282 C1orf167Q5SNV9 1468 aa13.44□□□□□ -0.26
SMC4-213ENST00000472282 RGPD8O14715 1765 aaPredicted RBP13.44□□□□□ -0.26
SMC4-213ENST00000472282 PIK3C2GO75747 1445 aa13.43□□□□□ -0.26
SMC4-213ENST00000472282 IFNLR1Q8IU57 520 aaPredicted RBP13.43□□□□□ -0.26
SMC4-213ENST00000472282 PCGF6Q9BYE7 350 aa13.43□□□□□ -0.26
SMC4-213ENST00000472282 CDC42BPGQ6DT37 1551 aa13.42□□□□□ -0.26
SMC4-213ENST00000472282 SLAIN1Q8ND83 568 aa13.42□□□□□ -0.26
SMC4-213ENST00000472282 CIZ1Q9ULV3 898 aaPredicted RBP13.42□□□□□ -0.26
SMC4-213ENST00000472282 ANKRD30BQ9BXX2 1392 aa13.42□□□□□ -0.26
SMC4-213ENST00000472282 FMN2Q9NZ56 1722 aa13.42□□□□□ -0.26
SMC4-213ENST00000472282 SPATA31A6Q5VVP1 1343 aa13.41□□□□□ -0.26
SMC4-213ENST00000472282 MKRN3Q13064 507 aaKnown RBP13.41□□□□□ -0.26
SMC4-213ENST00000472282 TMEM132EQ6IEE7 984 aa13.41□□□□□ -0.26
SMC4-213ENST00000472282 PLEKHH1Q9ULM0 1364 aa13.41□□□□□ -0.26
SMC4-213ENST00000472282 NRXN1Q9ULB1 1477 aa13.41□□□□□ -0.26
SMC4-213ENST00000472282 TECPR2O15040 1411 aa13.4□□□□□ -0.26
SMC4-213ENST00000472282 ORAI2Q96SN7 254 aa13.4□□□□□ -0.26
SMC4-213ENST00000472282 STK26Q9P289 416 aa13.39□□□□□ -0.27
SMC4-213ENST00000472282 LRPPRCP42704 1394 aaKnown RBP13.39□□□□□ -0.27
SMC4-213ENST00000472282 MYOM2P54296 1465 aa13.39□□□□□ -0.27
SMC4-213ENST00000472282 PNPLA6Q8IY17 1366 aa13.38□□□□□ -0.27
SMC4-213ENST00000472282 NUTM2BA6NNL0 878 aaPredicted RBP13.38□□□□□ -0.27
SMC4-213ENST00000472282 NUTM2EB1AL46 878 aaPredicted RBP13.38□□□□□ -0.27
SMC4-213ENST00000472282 PSEN1P49768 467 aa13.38□□□□□ -0.27
SMC4-213ENST00000472282 WAPLQ7Z5K2 1190 aa13.38□□□□□ -0.27
SMC4-213ENST00000472282 NUTM2AQ8IVF1 878 aaPredicted RBP13.38□□□□□ -0.27
SMC4-213ENST00000472282 YTHDC2Q9H6S0 1430 aaKnown RBP13.38□□□□□ -0.27
SMC4-213ENST00000472282 MARF1Q9Y4F3 1742 aaKnown RBP13.36□□□□□ -0.27
SMC4-213ENST00000472282 COL22A1Q8NFW1 1626 aaPredicted RBP13.36□□□□□ -0.27
SMC4-213ENST00000472282 ABCC11Q96J66 1382 aa13.36□□□□□ -0.27
SMC4-213ENST00000472282 MEX3CQ5U5Q3 659 aaKnown RBP13.36□□□□□ -0.27
SMC4-213ENST00000472282 PDAP1Q13442 181 aaKnown RBP13.35□□□□□ -0.27
SMC4-213ENST00000472282 CFAP70Q5T0N1 1121 aa13.35□□□□□ -0.27
SMC4-213ENST00000472282 LRRC59Q96AG4 307 aaKnown RBP13.35□□□□□ -0.27
SMC4-213ENST00000472282 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.35□□□□□ -0.27
SMC4-213ENST00000472282 SOS2Q07890 1332 aaPredicted RBP13.35□□□□□ -0.27
SMC4-213ENST00000472282 DHX57Q6P158 1386 aaKnown RBP13.34□□□□□ -0.27
SMC4-213ENST00000472282 ADGRB1O14514 1584 aa13.34□□□□□ -0.27
SMC4-213ENST00000472282 NUTM2FA1L443 756 aa13.34□□□□□ -0.27
SMC4-213ENST00000472282 C14orf93Q9H972 538 aaKnown RBP13.34□□□□□ -0.27
SMC4-213ENST00000472282 PXDNQ92626 1479 aa13.34□□□□□ -0.27
SMC4-213ENST00000472282 USP32Q8NFA0 1604 aa13.33□□□□□ -0.28
SMC4-213ENST00000472282 KIF1AQ12756 1690 aa13.33□□□□□ -0.28
SMC4-213ENST00000472282 L3MBTL3Q96JM7 780 aaPredicted RBP13.32□□□□□ -0.28
SMC4-213ENST00000472282 AFF2P51816 1311 aa13.32□□□□□ -0.28
SMC4-213ENST00000472282 ESCO1Q5FWF5 840 aa13.31□□□□□ -0.28
SMC4-213ENST00000472282 ARHGEF28Q8N1W1 1705 aaKnown RBP13.3□□□□□ -0.28
SMC4-213ENST00000472282 DLC1Q96QB1 1528 aa13.3□□□□□ -0.28
SMC4-213ENST00000472282 XPCQ01831 940 aaPredicted RBP13.3□□□□□ -0.28
SMC4-213ENST00000472282 ZNF772Q68DY9 489 aaPredicted RBP13.3□□□□□ -0.28
SMC4-213ENST00000472282 SNPHO15079 494 aa13.29□□□□□ -0.28
SMC4-213ENST00000472282 C8orf37Q96NL8 207 aa13.29□□□□□ -0.28
SMC4-213ENST00000472282 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.29□□□□□ -0.281e-7■■■■■ 35.2
SMC4-213ENST00000472282 ADGRB2O60241 1585 aa13.28□□□□□ -0.28
SMC4-213ENST00000472282 ABCA3Q99758 1704 aa13.28□□□□□ -0.28
SMC4-213ENST00000472282 FOXO3O43524 673 aa13.28□□□□□ -0.28
SMC4-213ENST00000472282 ADAMTS2O95450 1211 aa13.28□□□□□ -0.28
SMC4-213ENST00000472282 SAFB2Q14151 953 aaKnown RBP eCLIP13.28□□□□□ -0.28
SMC4-213ENST00000472282 KDM2AQ9Y2K7 1162 aa13.28□□□□□ -0.28
SMC4-213ENST00000472282 C3orf67Q6ZVT6 689 aa13.27□□□□□ -0.29
SMC4-213ENST00000472282 PDCD7Q8N8D1 485 aaKnown RBP13.27□□□□□ -0.29
SMC4-213ENST00000472282 DCAF11Q8TEB1 546 aa13.27□□□□□ -0.29
SMC4-213ENST00000472282 SIRT1Q96EB6 747 aa13.27□□□□□ -0.29
SMC4-213ENST00000472282 PRAM1Q96QH2 718 aa13.27□□□□□ -0.29
SMC4-213ENST00000472282 NPHP3Q7Z494 1330 aa13.26□□□□□ -0.29
SMC4-213ENST00000472282 TRPM3Q9HCF6 1732 aaPredicted RBP13.25□□□□□ -0.29
SMC4-213ENST00000472282 CDK12Q9NYV4 1490 aaPredicted RBP13.24□□□□□ -0.29
SMC4-213ENST00000472282 RGS12O14924 1447 aa13.24□□□□□ -0.29
SMC4-213ENST00000472282 RXRBP28702 533 aa13.24□□□□□ -0.29
SMC4-213ENST00000472282 TRAK1Q9UPV9 953 aa13.24□□□□□ -0.29
SMC4-213ENST00000472282 KIAA1210Q9ULL0 1709 aa13.24□□□□□ -0.29
SMC4-213ENST00000472282 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.23□□□□□ -0.29
SMC4-213ENST00000472282 NGLY1Q96IV0 654 aa13.23□□□□□ -0.29
SMC4-213ENST00000472282 QTRT2Q9H974 415 aaKnown RBP13.22□□□□□ -0.29
SMC4-213ENST00000472282 PLCH1Q4KWH8 1693 aa13.21□□□□□ -0.29
SMC4-213ENST00000472282 ALS2Q96Q42 1657 aa13.21□□□□□ -0.29
SMC4-213ENST00000472282 SPATA31A3Q5VYP0 1347 aa13.21□□□□□ -0.29
SMC4-213ENST00000472282 SIN3AQ96ST3 1273 aa13.21□□□□□ -0.29
SMC4-213ENST00000472282 HIRIP3Q9BW71 556 aaPredicted RBP13.21□□□□□ -0.29
SMC4-213ENST00000472282 CABP2Q9NPB3 220 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms