RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 FBXO3Q9UK99 471 aa15.78■□□□□ 0.12
COL6A3-209ENST00000472056 PLCD4Q9BRC7 762 aa15.78■□□□□ 0.12
COL6A3-209ENST00000472056 SMC2O95347 1197 aa15.78■□□□□ 0.12
COL6A3-209ENST00000472056 COG6Q9Y2V7 657 aa15.78■□□□□ 0.12
COL6A3-209ENST00000472056 SMTNL1A8MU46 457 aa15.78■□□□□ 0.12
COL6A3-209ENST00000472056 PAK3O75914 559 aaPredicted RBP15.78■□□□□ 0.12
COL6A3-209ENST00000472056 TEFQ10587 303 aa15.78■□□□□ 0.12
COL6A3-209ENST00000472056 PDILTQ8N807 584 aa15.77■□□□□ 0.12
COL6A3-209ENST00000472056 KIF3BO15066 747 aa15.77■□□□□ 0.12
COL6A3-209ENST00000472056 SLC3A2P08195 630 aaKnown RBP15.77■□□□□ 0.11
COL6A3-209ENST00000472056 IMMTQ16891 758 aaKnown RBP15.77■□□□□ 0.11
COL6A3-209ENST00000472056 NF2P35240 595 aa15.76■□□□□ 0.11
COL6A3-209ENST00000472056 CCDC181Q5TID7 509 aa15.76■□□□□ 0.11
COL6A3-209ENST00000472056 GNAI3P08754 354 aa15.76■□□□□ 0.11
COL6A3-209ENST00000472056 FYCO1Q9BQS8 1478 aa15.76■□□□□ 0.11
COL6A3-209ENST00000472056 ST20-MTHFSA0A0A6YYL1 179 aa15.76■□□□□ 0.11
COL6A3-209ENST00000472056 CDKL5O76039 1030 aa15.76■□□□□ 0.11
COL6A3-209ENST00000472056 GOLGA6L9A6NEM1 432 aa15.76■□□□□ 0.11
COL6A3-209ENST00000472056 ZSCAN12O43309 604 aa15.76■□□□□ 0.11
COL6A3-209ENST00000472056 DHX29Q7Z478 1369 aaKnown RBP15.76■□□□□ 0.11
COL6A3-209ENST00000472056 CCDC91Q7Z6B0 441 aa15.76■□□□□ 0.11
COL6A3-209ENST00000472056 DESP17661 470 aa15.75■□□□□ 0.11
COL6A3-209ENST00000472056 SPATA24Q86W54 205 aa15.75■□□□□ 0.11
COL6A3-209ENST00000472056 KIF18AQ8NI77 898 aa15.75■□□□□ 0.11
COL6A3-209ENST00000472056 GTF2E1P29083 439 aaPredicted RBP15.75■□□□□ 0.11
COL6A3-209ENST00000472056 SMG6Q86US8 1419 aaKnown RBP15.75■□□□□ 0.11
COL6A3-209ENST00000472056 DYNC1I1O14576 645 aa15.75■□□□□ 0.11
COL6A3-209ENST00000472056 STK26Q9P289 416 aa15.75■□□□□ 0.11
COL6A3-209ENST00000472056 CCAR1Q8IX12 1150 aaKnown RBP15.74■□□□□ 0.11
COL6A3-209ENST00000472056 CRACR2AQ9BSW2 395 aa15.74■□□□□ 0.11
COL6A3-209ENST00000472056 TTC5Q8N0Z6 440 aa15.74■□□□□ 0.11
COL6A3-209ENST00000472056 CLASRPQ8N2M8 674 aaKnown RBP15.74■□□□□ 0.11
COL6A3-209ENST00000472056 CTR9Q6PD62 1173 aa15.74■□□□□ 0.11
COL6A3-209ENST00000472056 CCDC83Q8IWF9 413 aa15.74■□□□□ 0.11
COL6A3-209ENST00000472056 TMCO3Q6UWJ1 677 aa15.74■□□□□ 0.11
COL6A3-209ENST00000472056 TNMDQ9H2S6 317 aa15.74■□□□□ 0.11
COL6A3-209ENST00000472056 CEP57L1Q8IYX8 460 aa15.74■□□□□ 0.11
COL6A3-209ENST00000472056 CCDC148Q8NFR7 591 aa15.74■□□□□ 0.11
COL6A3-209ENST00000472056 UBXN4Q92575 508 aa15.74■□□□□ 0.11
COL6A3-209ENST00000472056 CNKSR2Q8WXI2 1034 aa15.73■□□□□ 0.11
COL6A3-209ENST00000472056 ENOX2Q16206 610 aaKnown RBP15.73■□□□□ 0.11
COL6A3-209ENST00000472056 VPS37DQ86XT2 251 aa15.73■□□□□ 0.11
COL6A3-209ENST00000472056 NGDNQ8NEJ9 315 aaKnown RBP15.73■□□□□ 0.11
COL6A3-209ENST00000472056 EFCAB5A4FU69 1503 aa15.73■□□□□ 0.11
COL6A3-209ENST00000472056 DIAPH1O60610 1272 aaKnown RBP15.72■□□□□ 0.11
COL6A3-209ENST00000472056 CTDP1Q9Y5B0 961 aaPredicted RBP15.72■□□□□ 0.11
COL6A3-209ENST00000472056 K7ELQ4 463 aaPredicted RBP15.72■□□□□ 0.11
COL6A3-209ENST00000472056 SOX12O15370 315 aa15.72■□□□□ 0.11
COL6A3-209ENST00000472056 FILIP1Q7Z7B0 1213 aa15.72■□□□□ 0.11
COL6A3-209ENST00000472056 TTLL5Q6EMB2 1281 aa15.72■□□□□ 0.11
COL6A3-209ENST00000472056 FOXD4L6Q3SYB3 417 aaPredicted RBP15.72■□□□□ 0.11
COL6A3-209ENST00000472056 FOXD4L3Q6VB84 417 aaPredicted RBP15.72■□□□□ 0.11
COL6A3-209ENST00000472056 MROH2BQ7Z745 1585 aa15.71■□□□□ 0.11
COL6A3-209ENST00000472056 SERPINC1P01008 464 aa15.71■□□□□ 0.11
COL6A3-209ENST00000472056 SAFB2Q14151 953 aaKnown RBP eCLIP15.71■□□□□ 0.11
COL6A3-209ENST00000472056 ZNF397Q8NF99 534 aaPredicted RBP15.71■□□□□ 0.11
COL6A3-209ENST00000472056 TUBB4AP04350 444 aa15.71■□□□□ 0.11
COL6A3-209ENST00000472056 SLC4A3P48751 1232 aa15.71■□□□□ 0.1
COL6A3-209ENST00000472056 BACH2Q9BYV9 841 aa15.71■□□□□ 0.1
COL6A3-209ENST00000472056 KRT32Q14532 448 aa15.71■□□□□ 0.1
COL6A3-209ENST00000472056 PRIMPOLQ96LW4 560 aa15.7■□□□□ 0.1
COL6A3-209ENST00000472056 RBM33Q96EV2 1170 aaKnown RBP15.7■□□□□ 0.1
COL6A3-209ENST00000472056 CTAGE5O15320 804 aa15.7■□□□□ 0.1
COL6A3-209ENST00000472056 KANK4Q5T7N3 995 aaPredicted RBP15.7■□□□□ 0.1
COL6A3-209ENST00000472056 CDK5RAP3Q96JB5 506 aa15.7■□□□□ 0.1
COL6A3-209ENST00000472056 ZSCAN31Q96LW9 406 aaPredicted RBP15.69■□□□□ 0.1
COL6A3-209ENST00000472056 DDX12PQ92771 950 aa15.69■□□□□ 0.1
COL6A3-209ENST00000472056 IVLP07476 585 aa15.69■□□□□ 0.1
COL6A3-209ENST00000472056 PPM1EQ8WY54 764 aa15.69■□□□□ 0.1
COL6A3-209ENST00000472056 ZNF330Q9Y3S2 320 aaPredicted RBP15.69■□□□□ 0.1
COL6A3-209ENST00000472056 JAKMIP3Q5VZ66 844 aa15.69■□□□□ 0.1
COL6A3-209ENST00000472056 TRIM22Q8IYM9 498 aa15.69■□□□□ 0.1
COL6A3-209ENST00000472056 GSDMDP57764 484 aa15.68■□□□□ 0.1
COL6A3-209ENST00000472056 HECW1Q76N89 1606 aa15.68■□□□□ 0.1
COL6A3-209ENST00000472056 AEBP2Q6ZN18 517 aaPredicted RBP15.68■□□□□ 0.1
COL6A3-209ENST00000472056 DNAJC2Q99543 621 aaKnown RBP15.68■□□□□ 0.1
COL6A3-209ENST00000472056 PAXBP1Q9Y5B6 917 aa15.68■□□□□ 0.1
COL6A3-209ENST00000472056 RIPK4P57078 832 aa15.67■□□□□ 0.1
COL6A3-209ENST00000472056 CYP46A1Q9Y6A2 500 aa15.67■□□□□ 0.1
COL6A3-209ENST00000472056 DNAI2Q9GZS0 605 aa15.67■□□□□ 0.1
COL6A3-209ENST00000472056 TBC1D2BQ9UPU7 963 aa15.67■□□□□ 0.1
COL6A3-209ENST00000472056 UBTFL1P0CB47 393 aaPredicted RBP15.67■□□□□ 0.1
COL6A3-209ENST00000472056 FOXD1Q16676 465 aa15.67■□□□□ 0.1
COL6A3-209ENST00000472056 CETN2P41208 172 aa15.67■□□□□ 0.1
COL6A3-209ENST00000472056 STK38Q15208 465 aa15.67■□□□□ 0.1
COL6A3-209ENST00000472056 PLIN1O60240 522 aa15.67■□□□□ 0.1
COL6A3-209ENST00000472056 FKBP5Q13451 457 aaPredicted RBP15.67■□□□□ 0.1
COL6A3-209ENST00000472056 STAMBPO95630 424 aa15.66■□□□□ 0.1
COL6A3-209ENST00000472056 WASF1Q92558 559 aa15.66■□□□□ 0.1
COL6A3-209ENST00000472056 EHBP1L1Q8N3D4 1523 aa15.66■□□□□ 0.1
COL6A3-209ENST00000472056 PPP6R1Q9UPN7 881 aa15.66■□□□□ 0.1
COL6A3-209ENST00000472056 FGD6Q6ZV73 1430 aa15.66■□□□□ 0.1
COL6A3-209ENST00000472056 PRPF40AO75400 957 aaKnown RBP15.66■□□□□ 0.1
COL6A3-209ENST00000472056 TRIM21P19474 475 aaKnown RBP15.66■□□□□ 0.1
COL6A3-209ENST00000472056 WWC2Q6AWC2 1192 aa15.66■□□□□ 0.1
COL6A3-209ENST00000472056 GCOM1H8Y6P7 765 aaPredicted RBP15.65■□□□□ 0.1
COL6A3-209ENST00000472056 MYZAPP0CAP1 466 aa15.65■□□□□ 0.1
COL6A3-209ENST00000472056 SFPQP23246 707 aaKnown RBP eCLIP15.65■□□□□ 0.1
COL6A3-209ENST00000472056 ZFYVE27Q5T4F4 411 aa15.65■□□□□ 0.1
COL6A3-209ENST00000472056 CEP131Q9UPN4 1083 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms