RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 CCDC9Q9Y3X0 531 aaKnown RBP11.74□□□□□ -0.53
USP48-207ENST00000471752 ACEP12821 1306 aa11.74□□□□□ -0.53
USP48-207ENST00000471752 ADGRB2O60241 1585 aa11.73□□□□□ -0.53
USP48-207ENST00000471752 ONECUT3O60422 494 aaPredicted RBP11.73□□□□□ -0.53
USP48-207ENST00000471752 ATP7BP35670 1465 aa11.73□□□□□ -0.53
USP48-207ENST00000471752 ZC3H6P61129 1189 aaKnown RBP11.73□□□□□ -0.53
USP48-207ENST00000471752 KIF1AQ12756 1690 aa11.73□□□□□ -0.53
USP48-207ENST00000471752 FAM98CQ17RN3 349 aaKnown RBP11.73□□□□□ -0.53
USP48-207ENST00000471752 ATAD2Q6PL18 1390 aa11.73□□□□□ -0.53
USP48-207ENST00000471752 STAC3Q96MF2 364 aa11.73□□□□□ -0.53
USP48-207ENST00000471752 TULP4Q9NRJ4 1543 aa11.73□□□□□ -0.53
USP48-207ENST00000471752 ARHGEF10O15013 1369 aa11.72□□□□□ -0.53
USP48-207ENST00000471752 GPRASP1Q5JY77 1395 aa11.72□□□□□ -0.53
USP48-207ENST00000471752 TRPM3Q9HCF6 1732 aaPredicted RBP11.72□□□□□ -0.53
USP48-207ENST00000471752 PLEKHG3A1L390 1219 aa11.71□□□□□ -0.53
USP48-207ENST00000471752 NCBP3Q53F19 620 aaKnown RBP11.71□□□□□ -0.53
USP48-207ENST00000471752 MARF1Q9Y4F3 1742 aaKnown RBP11.71□□□□□ -0.54
USP48-207ENST00000471752 ARHGEF28Q8N1W1 1705 aaKnown RBP11.7□□□□□ -0.54
USP48-207ENST00000471752 CABP1Q9NZU7 370 aa11.7□□□□□ -0.54
USP48-207ENST00000471752 CCDC61Q9Y6R9 512 aa11.7□□□□□ -0.54
USP48-207ENST00000471752 KIAA0232Q92628 1395 aa11.69□□□□□ -0.54
USP48-207ENST00000471752 ALS2Q96Q42 1657 aa11.68□□□□□ -0.54
USP48-207ENST00000471752 CENPJQ9HC77 1338 aaPredicted RBP11.68□□□□□ -0.54
USP48-207ENST00000471752 SRPK2P78362 688 aaKnown RBP11.68□□□□□ -0.54
USP48-207ENST00000471752 KRT27Q7Z3Y8 459 aa11.68□□□□□ -0.54
USP48-207ENST00000471752 PRDM11Q9NQV5 511 aa11.68□□□□□ -0.54
USP48-207ENST00000471752 STRN4Q9NRL3 753 aa11.68□□□□□ -0.54
USP48-207ENST00000471752 POLR3AO14802 1390 aaPredicted RBP11.67□□□□□ -0.54
USP48-207ENST00000471752 SPATA31A5Q5VU36 1347 aa11.67□□□□□ -0.54
USP48-207ENST00000471752 SPATA31A7Q8IWB4 1347 aa11.67□□□□□ -0.54
USP48-207ENST00000471752 ABCA3Q99758 1704 aa11.67□□□□□ -0.54
USP48-207ENST00000471752 PLCH1Q4KWH8 1693 aa11.66□□□□□ -0.54
USP48-207ENST00000471752 BRWD3Q6RI45 1802 aa11.66□□□□□ -0.54
USP48-207ENST00000471752 A0A0G2JS52 829 aa11.66□□□□□ -0.54
USP48-207ENST00000471752 MYT1Q01538 1121 aa11.66□□□□□ -0.54
USP48-207ENST00000471752 ABTB2Q8N961 1025 aa11.66□□□□□ -0.54
USP48-207ENST00000471752 USP35Q9P2H5 1018 aa11.66□□□□□ -0.54
USP48-207ENST00000471752 LARP1Q6PKG0 1096 aaKnown RBP11.65□□□□□ -0.54
USP48-207ENST00000471752 ZRANB1Q9UGI0 708 aa11.65□□□□□ -0.54
USP48-207ENST00000471752 PPIP5K1Q6PFW1 1433 aa11.65□□□□□ -0.54
USP48-207ENST00000471752 EIF3AQ14152 1382 aaKnown RBP11.65□□□□□ -0.55
USP48-207ENST00000471752 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.64□□□□□ -0.55
USP48-207ENST00000471752 SPATA31A1Q5TZJ5 1347 aa11.63□□□□□ -0.55
USP48-207ENST00000471752 ZBTB7CA1YPR0 619 aa11.63□□□□□ -0.55
USP48-207ENST00000471752 GCP02774 474 aa11.63□□□□□ -0.55
USP48-207ENST00000471752 EN1Q05925 392 aaPredicted RBP11.63□□□□□ -0.55
USP48-207ENST00000471752 CCDC125Q86Z20 511 aa11.63□□□□□ -0.55
USP48-207ENST00000471752 RNF39Q9H2S5 420 aa11.63□□□□□ -0.55
USP48-207ENST00000471752 CRYBG1Q9Y4K1 1723 aa11.63□□□□□ -0.55
USP48-207ENST00000471752 AXIN2Q9Y2T1 843 aa11.62□□□□□ -0.55
USP48-207ENST00000471752 NRAPQ86VF7 1730 aa11.62□□□□□ -0.55
USP48-207ENST00000471752 CAMTA1Q9Y6Y1 1673 aa11.62□□□□□ -0.55
USP48-207ENST00000471752 USP19O94966 1318 aa11.61□□□□□ -0.55
USP48-207ENST00000471752 BLMP54132 1417 aaPredicted RBP11.61□□□□□ -0.55
USP48-207ENST00000471752 PSDA5PKW4 1024 aaPredicted RBP11.61□□□□□ -0.55
USP48-207ENST00000471752 NLRP6P59044 892 aa11.61□□□□□ -0.55
USP48-207ENST00000471752 KIAA1210Q9ULL0 1709 aa11.6□□□□□ -0.55
USP48-207ENST00000471752 TOPAZ1Q8N9V7 1692 aa11.6□□□□□ -0.55
USP48-207ENST00000471752 ROCK2O75116 1388 aaKnown RBP11.6□□□□□ -0.55
USP48-207ENST00000471752 SOX12O15370 315 aa11.6□□□□□ -0.55
USP48-207ENST00000471752 EVA1CP58658 441 aa11.6□□□□□ -0.55
USP48-207ENST00000471752 NWD2Q9ULI1 1742 aa11.6□□□□□ -0.55
USP48-207ENST00000471752 SSH2Q76I76 1423 aa11.6□□□□□ -0.55
USP48-207ENST00000471752 COL14A1Q05707 1796 aaKnown RBP11.59□□□□□ -0.55
USP48-207ENST00000471752 TRIM37O94972 964 aa11.59□□□□□ -0.55
USP48-207ENST00000471752 PTF1AQ7RTS3 328 aa11.59□□□□□ -0.55
USP48-207ENST00000471752 NLRP13Q86W25 1043 aa11.59□□□□□ -0.55
USP48-207ENST00000471752 TTC21BQ7Z4L5 1316 aa11.59□□□□□ -0.55
USP48-207ENST00000471752 EZH2Q15910 746 aaKnown RBP11.58□□□□□ -0.56
USP48-207ENST00000471752 USP6P35125 1406 aa11.58□□□□□ -0.56
USP48-207ENST00000471752 EVC2Q86UK5 1308 aa11.58□□□□□ -0.56
USP48-207ENST00000471752 SLC12A5Q9H2X9 1139 aa11.57□□□□□ -0.56
USP48-207ENST00000471752 TRPM1Q7Z4N2 1603 aa11.57□□□□□ -0.56
USP48-207ENST00000471752 PHRF1Q9P1Y6 1649 aaKnown RBP11.57□□□□□ -0.56
USP48-207ENST00000471752 CPDO75976 1380 aa11.56□□□□□ -0.56
USP48-207ENST00000471752 SF3B2Q13435 895 aaKnown RBP11.56□□□□□ -0.56
USP48-207ENST00000471752 NRKQ7Z2Y5 1582 aa11.56□□□□□ -0.56
USP48-207ENST00000471752 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.56□□□□□ -0.56
USP48-207ENST00000471752 CAMKK2Q96RR4 588 aa11.56□□□□□ -0.56
USP48-207ENST00000471752 CARD11Q9BXL7 1154 aa11.56□□□□□ -0.56
USP48-207ENST00000471752 QRICH2Q9H0J4 1663 aa11.55□□□□□ -0.56
USP48-207ENST00000471752 FBLN1P23142 703 aa11.55□□□□□ -0.56
USP48-207ENST00000471752 BARGINQ6ZT62 677 aa11.55□□□□□ -0.56
USP48-207ENST00000471752 NME9Q86XW9 330 aa11.55□□□□□ -0.56
USP48-207ENST00000471752 TCP11L2Q8N4U5 519 aa11.55□□□□□ -0.56
USP48-207ENST00000471752 THSD7AQ9UPZ6 1657 aa11.55□□□□□ -0.56
USP48-207ENST00000471752 ITSN1Q15811 1721 aa11.55□□□□□ -0.56
USP48-207ENST00000471752 R3HDM1Q15032 1099 aaKnown RBP11.54□□□□□ -0.56
USP48-207ENST00000471752 ARHGEF25Q86VW2 580 aa11.54□□□□□ -0.56
USP48-207ENST00000471752 CPSF1Q10570 1443 aaKnown RBP11.53□□□□□ -0.56
USP48-207ENST00000471752 APBA3O96018 575 aa11.53□□□□□ -0.56
USP48-207ENST00000471752 BAG6P46379 1132 aa11.53□□□□□ -0.56
USP48-207ENST00000471752 C1QBPQ07021 282 aaKnown RBP11.53□□□□□ -0.56
USP48-207ENST00000471752 TMC1Q8TDI8 760 aa11.53□□□□□ -0.56
USP48-207ENST00000471752 LMO7Q8WWI1 1683 aa11.52□□□□□ -0.56
USP48-207ENST00000471752 COL5A2P05997 1499 aaPredicted RBP11.52□□□□□ -0.56
USP48-207ENST00000471752 CD163L1Q9NR16 1453 aa11.52□□□□□ -0.56
USP48-207ENST00000471752 ST20-MTHFSA0A0A6YYL1 179 aa11.52□□□□□ -0.57
USP48-207ENST00000471752 PDE3BQ13370 1112 aa11.52□□□□□ -0.57
USP48-207ENST00000471752 FAM196AQ6ZSG2 479 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms