RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 ACEP12821 1306 aa12.57□□□□□ -0.4
VPS52-216ENST00000471309 LRRC7Q96NW7 1537 aa12.57□□□□□ -0.4
VPS52-216ENST00000471309 OVOS2A0A0J9YW53 1432 aa12.56□□□□□ -0.4
VPS52-216ENST00000471309 DCCP43146 1447 aa12.56□□□□□ -0.4
VPS52-216ENST00000471309 OVOS2Q6IE36 1432 aa12.56□□□□□ -0.4
VPS52-216ENST00000471309 WDR43Q15061 677 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS52-216ENST00000471309 PIK3C2AO00443 1686 aa12.55□□□□□ -0.4
VPS52-216ENST00000471309 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS52-216ENST00000471309 CFAP53Q96M91 514 aa12.55□□□□□ -0.4
VPS52-216ENST00000471309 AATKQ6ZMQ8 1374 aa12.55□□□□□ -0.4
VPS52-216ENST00000471309 NUTM2FA1L443 756 aa12.54□□□□□ -0.4
VPS52-216ENST00000471309 TNNT2P45379 298 aaPredicted RBP12.54□□□□□ -0.4
VPS52-216ENST00000471309 TTC21BQ7Z4L5 1316 aa12.54□□□□□ -0.4
VPS52-216ENST00000471309 TTC21AQ8NDW8 1320 aa12.54□□□□□ -0.4
VPS52-216ENST00000471309 CDK12Q9NYV4 1490 aaPredicted RBP12.53□□□□□ -0.4
VPS52-216ENST00000471309 MTHFSP49914 203 aa12.53□□□□□ -0.4
VPS52-216ENST00000471309 NME9Q86XW9 330 aa12.53□□□□□ -0.4
VPS52-216ENST00000471309 MARF1Q9Y4F3 1742 aaKnown RBP12.53□□□□□ -0.4
VPS52-216ENST00000471309 XIRP1Q702N8 1843 aaKnown RBP12.53□□□□□ -0.4
VPS52-216ENST00000471309 PROSER2Q86WR7 435 aaPredicted RBP12.52□□□□□ -0.41
VPS52-216ENST00000471309 ADAMTS8Q9UP79 889 aa12.52□□□□□ -0.41
VPS52-216ENST00000471309 TMEM94Q12767 1356 aa12.52□□□□□ -0.41
VPS52-216ENST00000471309 USP31Q70CQ4 1352 aa12.52□□□□□ -0.41
VPS52-216ENST00000471309 PNPLA6Q8IY17 1366 aa12.52□□□□□ -0.41
VPS52-216ENST00000471309 C14orf37Q86TY3 774 aa12.51□□□□□ -0.41
VPS52-216ENST00000471309 NGDNQ8NEJ9 315 aaKnown RBP12.51□□□□□ -0.41
VPS52-216ENST00000471309 COG3Q96JB2 828 aa12.51□□□□□ -0.41
VPS52-216ENST00000471309 MAP2P11137 1827 aaKnown RBP12.51□□□□□ -0.41
VPS52-216ENST00000471309 PMFBP1Q8TBY8 1022 aa12.5□□□□□ -0.41
VPS52-216ENST00000471309 RBM33Q96EV2 1170 aaKnown RBP12.5□□□□□ -0.41
VPS52-216ENST00000471309 PHF8Q9UPP1 1060 aa12.5□□□□□ -0.41
VPS52-216ENST00000471309 IQSEC2Q5JU85 1478 aa12.5□□□□□ -0.41
VPS52-216ENST00000471309 C1orf167Q5SNV9 1468 aa12.49□□□□□ -0.41
VPS52-216ENST00000471309 MST1RQ04912 1400 aa12.49□□□□□ -0.41
VPS52-216ENST00000471309 C19orf44Q9H6X5 657 aa12.49□□□□□ -0.41
VPS52-216ENST00000471309 TRPM3Q9HCF6 1732 aaPredicted RBP12.48□□□□□ -0.41
VPS52-216ENST00000471309 POLKQ9UBT6 870 aa12.47□□□□□ -0.41
VPS52-216ENST00000471309 ZRANB1Q9UGI0 708 aa12.47□□□□□ -0.41
VPS52-216ENST00000471309 PEAK1Q9H792 1746 aa12.47□□□□□ -0.41
VPS52-216ENST00000471309 MSH6P52701 1360 aa12.46□□□□□ -0.41
VPS52-216ENST00000471309 PDE3BQ13370 1112 aa12.46□□□□□ -0.41
VPS52-216ENST00000471309 NGEFQ8N5V2 710 aa12.46□□□□□ -0.41
VPS52-216ENST00000471309 GTF3C3Q9Y5Q9 886 aa12.46□□□□□ -0.41
VPS52-216ENST00000471309 KCNA4P22459 653 aa12.45□□□□□ -0.42
VPS52-216ENST00000471309 ESCO1Q5FWF5 840 aa12.45□□□□□ -0.42
VPS52-216ENST00000471309 NUDCQ9Y266 331 aa12.45□□□□□ -0.42
VPS52-216ENST00000471309 DIAPH1O60610 1272 aaKnown RBP12.44□□□□□ -0.42
VPS52-216ENST00000471309 ATF3P18847 181 aa12.44□□□□□ -0.42
VPS52-216ENST00000471309 ALS2Q96Q42 1657 aa12.44□□□□□ -0.42
VPS52-216ENST00000471309 PHRF1Q9P1Y6 1649 aaKnown RBP12.44□□□□□ -0.42
VPS52-216ENST00000471309 ZNF521Q96K83 1311 aa12.43□□□□□ -0.42
VPS52-216ENST00000471309 RGPD1P0DJD0 1748 aa12.43□□□□□ -0.42
VPS52-216ENST00000471309 CADPS2Q86UW7 1296 aa12.43□□□□□ -0.42
VPS52-216ENST00000471309 CCDC146Q8IYE0 955 aa12.43□□□□□ -0.42
VPS52-216ENST00000471309 RUNDC1Q96C34 613 aa12.43□□□□□ -0.42
VPS52-216ENST00000471309 DMRT2Q9Y5R5 561 aa12.43□□□□□ -0.42
VPS52-216ENST00000471309 EMILIN1Q9Y6C2 1016 aa12.43□□□□□ -0.42
VPS52-216ENST00000471309 KIF24Q5T7B8 1368 aa12.43□□□□□ -0.42
VPS52-216ENST00000471309 SLIT3O75094 1523 aa12.42□□□□□ -0.42
VPS52-216ENST00000471309 ZNF335Q9H4Z2 1342 aaPredicted RBP12.42□□□□□ -0.42
VPS52-216ENST00000471309 NCBP3Q53F19 620 aaKnown RBP12.42□□□□□ -0.42
VPS52-216ENST00000471309 NFAT5O94916 1531 aa12.42□□□□□ -0.42
VPS52-216ENST00000471309 LTN1O94822 1766 aa12.41□□□□□ -0.42
VPS52-216ENST00000471309 U2AF1L5P0DN76 240 aaPredicted RBP12.41□□□□□ -0.42
VPS52-216ENST00000471309 U2AF1Q01081 240 aaKnown RBP eCLIP12.41□□□□□ -0.423e-7■■□□□ 12.8
VPS52-216ENST00000471309 ORAI2Q96SN7 254 aa12.41□□□□□ -0.42
VPS52-216ENST00000471309 SBNO1A3KN83 1393 aa12.41□□□□□ -0.42
VPS52-216ENST00000471309 FLT4P35916 1363 aa12.41□□□□□ -0.42
VPS52-216ENST00000471309 SENP3-EIF4A1A0A087X0R7 540 aa12.4□□□□□ -0.42
VPS52-216ENST00000471309 APAF1O14727 1248 aa12.4□□□□□ -0.42
VPS52-216ENST00000471309 FBLN1P23142 703 aa12.4□□□□□ -0.42
VPS52-216ENST00000471309 PSME1Q06323 249 aa12.4□□□□□ -0.42
VPS52-216ENST00000471309 RRS1Q15050 365 aaKnown RBP12.4□□□□□ -0.42
VPS52-216ENST00000471309 RTL1A6NKG5 1358 aa12.4□□□□□ -0.42
VPS52-216ENST00000471309 U2SURPO15042 1029 aaKnown RBP12.39□□□□□ -0.43
VPS52-216ENST00000471309 PPM1GO15355 546 aaPredicted RBP12.39□□□□□ -0.43
VPS52-216ENST00000471309 IL13P35225 146 aa12.39□□□□□ -0.43
VPS52-216ENST00000471309 NLRP6P59044 892 aa12.39□□□□□ -0.43
VPS52-216ENST00000471309 ABTB2Q8N961 1025 aa12.39□□□□□ -0.43
VPS52-216ENST00000471309 PNNQ9H307 717 aaKnown RBP12.39□□□□□ -0.43
VPS52-216ENST00000471309 PXDNQ92626 1479 aa12.39□□□□□ -0.43
VPS52-216ENST00000471309 MAP3K19Q56UN5 1328 aa12.38□□□□□ -0.43
VPS52-216ENST00000471309 PAK3O75914 559 aaPredicted RBP12.38□□□□□ -0.43
VPS52-216ENST00000471309 PLEKHF1Q96S99 279 aa12.38□□□□□ -0.43
VPS52-216ENST00000471309 SALL2Q9Y467 1007 aaPredicted RBP12.38□□□□□ -0.43
VPS52-216ENST00000471309 CRYBG1Q9Y4K1 1723 aa12.37□□□□□ -0.43
VPS52-216ENST00000471309 FOXO3O43524 673 aa12.37□□□□□ -0.43
VPS52-216ENST00000471309 FCHSD2O94868 740 aa12.37□□□□□ -0.43
VPS52-216ENST00000471309 CCDC27Q2M243 656 aa12.37□□□□□ -0.43
VPS52-216ENST00000471309 TCP11L2Q8N4U5 519 aa12.37□□□□□ -0.43
VPS52-216ENST00000471309 MED1Q15648 1581 aaPredicted RBP12.37□□□□□ -0.43
VPS52-216ENST00000471309 USP19O94966 1318 aa12.37□□□□□ -0.43
VPS52-216ENST00000471309 MAPK8IP3Q9UPT6 1336 aa12.37□□□□□ -0.43
VPS52-216ENST00000471309 GOLGA2Q08379 1002 aa12.36□□□□□ -0.43
VPS52-216ENST00000471309 NHSL1Q5SYE7 1610 aa12.36□□□□□ -0.43
VPS52-216ENST00000471309 TNS3Q68CZ2 1445 aa12.36□□□□□ -0.43
VPS52-216ENST00000471309 NPHP3Q7Z494 1330 aa12.36□□□□□ -0.43
VPS52-216ENST00000471309 ARHGEF10O15013 1369 aa12.35□□□□□ -0.43
VPS52-216ENST00000471309 NEFLP07196 543 aa12.35□□□□□ -0.43
VPS52-216ENST00000471309 KRT28Q7Z3Y7 464 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms