RNA–Protein interactions for RNA: ENST00000469923.5

SHROOM3-203, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 764 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-203ENST00000469923 CCDC9Q9Y3X0 531 aaKnown RBP13.25□□□□□ -0.29
SHROOM3-203ENST00000469923 TRPM3Q9HCF6 1732 aaPredicted RBP13.25□□□□□ -0.29
SHROOM3-203ENST00000469923 VPS72Q15906 364 aa13.24□□□□□ -0.29
SHROOM3-203ENST00000469923 GLI3P10071 1580 aa13.24□□□□□ -0.29
SHROOM3-203ENST00000469923 FAM98CQ17RN3 349 aaKnown RBP13.23□□□□□ -0.29
SHROOM3-203ENST00000469923 KIF1AQ12756 1690 aa13.23□□□□□ -0.29
SHROOM3-203ENST00000469923 KIAA0232Q92628 1395 aa13.22□□□□□ -0.29
SHROOM3-203ENST00000469923 DEFB132Q7Z7B7 95 aa13.22□□□□□ -0.29
SHROOM3-203ENST00000469923 ABTB2Q8N961 1025 aa13.22□□□□□ -0.29
SHROOM3-203ENST00000469923 PCGF6Q9BYE7 350 aa13.22□□□□□ -0.29
SHROOM3-203ENST00000469923 STRN4Q9NRL3 753 aa13.22□□□□□ -0.29
SHROOM3-203ENST00000469923 CDK12Q9NYV4 1490 aaPredicted RBP13.22□□□□□ -0.29
SHROOM3-203ENST00000469923 PPIP5K1Q6PFW1 1433 aa13.22□□□□□ -0.29
SHROOM3-203ENST00000469923 POLR3AO14802 1390 aaPredicted RBP13.21□□□□□ -0.29
SHROOM3-203ENST00000469923 ARHGEF10O15013 1369 aa13.21□□□□□ -0.29
SHROOM3-203ENST00000469923 ROCK2O75116 1388 aaKnown RBP13.21□□□□□ -0.29
SHROOM3-203ENST00000469923 ZBTB7CA1YPR0 619 aa13.21□□□□□ -0.29
SHROOM3-203ENST00000469923 ONECUT3O60422 494 aaPredicted RBP13.21□□□□□ -0.29
SHROOM3-203ENST00000469923 CARD11Q9BXL7 1154 aa13.2□□□□□ -0.3
SHROOM3-203ENST00000469923 SLC12A5Q9H2X9 1139 aa13.2□□□□□ -0.3
SHROOM3-203ENST00000469923 PRDM11Q9NQV5 511 aa13.2□□□□□ -0.3
SHROOM3-203ENST00000469923 ALS2Q96Q42 1657 aa13.2□□□□□ -0.3
SHROOM3-203ENST00000469923 SOX12O15370 315 aa13.19□□□□□ -0.3
SHROOM3-203ENST00000469923 LARP1Q6PKG0 1096 aaKnown RBP13.19□□□□□ -0.3
SHROOM3-203ENST00000469923 USP35Q9P2H5 1018 aa13.19□□□□□ -0.3
SHROOM3-203ENST00000469923 AXIN2Q9Y2T1 843 aa13.19□□□□□ -0.3
SHROOM3-203ENST00000469923 KIAA1210Q9ULL0 1709 aa13.19□□□□□ -0.3
SHROOM3-203ENST00000469923 MARF1Q9Y4F3 1742 aaKnown RBP13.19□□□□□ -0.3
SHROOM3-203ENST00000469923 TRPM1Q7Z4N2 1603 aa13.18□□□□□ -0.3
SHROOM3-203ENST00000469923 GCP02774 474 aa13.18□□□□□ -0.3
SHROOM3-203ENST00000469923 FBLN1P23142 703 aa13.18□□□□□ -0.3
SHROOM3-203ENST00000469923 NLRP6P59044 892 aa13.18□□□□□ -0.3
SHROOM3-203ENST00000469923 SPATA31A5Q5VU36 1347 aa13.17□□□□□ -0.3
SHROOM3-203ENST00000469923 SPATA31A7Q8IWB4 1347 aa13.17□□□□□ -0.3
SHROOM3-203ENST00000469923 ST20-MTHFSA0A0A6YYL1 179 aa13.17□□□□□ -0.3
SHROOM3-203ENST00000469923 ABCA3Q99758 1704 aa13.16□□□□□ -0.3
SHROOM3-203ENST00000469923 SSH2Q76I76 1423 aa13.16□□□□□ -0.3
SHROOM3-203ENST00000469923 EIF3AQ14152 1382 aaKnown RBP13.16□□□□□ -0.3
SHROOM3-203ENST00000469923 TTC21BQ7Z4L5 1316 aa13.15□□□□□ -0.3
SHROOM3-203ENST00000469923 EVC2Q86UK5 1308 aa13.15□□□□□ -0.3
SHROOM3-203ENST00000469923 A0A0G2JS52 829 aa13.15□□□□□ -0.3
SHROOM3-203ENST00000469923 MYT1Q01538 1121 aa13.15□□□□□ -0.3
SHROOM3-203ENST00000469923 KRT27Q7Z3Y8 459 aa13.15□□□□□ -0.3
SHROOM3-203ENST00000469923 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.15□□□□□ -0.3
SHROOM3-203ENST00000469923 TESK2Q96S53 571 aa13.15□□□□□ -0.3
SHROOM3-203ENST00000469923 BRWD3Q6RI45 1802 aa13.15□□□□□ -0.3
SHROOM3-203ENST00000469923 USP19O94966 1318 aa13.14□□□□□ -0.31
SHROOM3-203ENST00000469923 NME9Q86XW9 330 aa13.14□□□□□ -0.31
SHROOM3-203ENST00000469923 TMC1Q8TDI8 760 aa13.14□□□□□ -0.31
SHROOM3-203ENST00000469923 ATAD2Q6PL18 1390 aa13.14□□□□□ -0.31
SHROOM3-203ENST00000469923 TONSLQ96HA7 1378 aa13.14□□□□□ -0.31
SHROOM3-203ENST00000469923 PLCH1Q4KWH8 1693 aa13.14□□□□□ -0.31
SHROOM3-203ENST00000469923 QRICH2Q9H0J4 1663 aa13.14□□□□□ -0.31
SHROOM3-203ENST00000469923 CAMTA1Q9Y6Y1 1673 aa13.14□□□□□ -0.31
SHROOM3-203ENST00000469923 SPATA31A1Q5TZJ5 1347 aa13.13□□□□□ -0.31
SHROOM3-203ENST00000469923 TOPAZ1Q8N9V7 1692 aa13.13□□□□□ -0.31
SHROOM3-203ENST00000469923 EVA1CP58658 441 aa13.13□□□□□ -0.31
SHROOM3-203ENST00000469923 PTF1AQ7RTS3 328 aa13.13□□□□□ -0.31
SHROOM3-203ENST00000469923 CRYBG1Q9Y4K1 1723 aa13.13□□□□□ -0.31
SHROOM3-203ENST00000469923 USP6P35125 1406 aa13.13□□□□□ -0.31
SHROOM3-203ENST00000469923 NLRP13Q86W25 1043 aa13.12□□□□□ -0.31
SHROOM3-203ENST00000469923 CD163L1Q9NR16 1453 aa13.1□□□□□ -0.31
SHROOM3-203ENST00000469923 NRAPQ86VF7 1730 aa13.1□□□□□ -0.31
SHROOM3-203ENST00000469923 EN1Q05925 392 aaPredicted RBP13.09□□□□□ -0.31
SHROOM3-203ENST00000469923 CPSF1Q10570 1443 aaKnown RBP13.09□□□□□ -0.31
SHROOM3-203ENST00000469923 ARHGEF25Q86VW2 580 aa13.09□□□□□ -0.31
SHROOM3-203ENST00000469923 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.08□□□□□ -0.32
SHROOM3-203ENST00000469923 KTN1Q86UP2 1357 aaKnown RBP13.07□□□□□ -0.32
SHROOM3-203ENST00000469923 COL14A1Q05707 1796 aaKnown RBP13.07□□□□□ -0.32
SHROOM3-203ENST00000469923 TRIM37O94972 964 aa13.07□□□□□ -0.32
SHROOM3-203ENST00000469923 CPDO75976 1380 aa13.07□□□□□ -0.32
SHROOM3-203ENST00000469923 SBNO2Q9Y2G9 1366 aa13.07□□□□□ -0.32
SHROOM3-203ENST00000469923 PHRF1Q9P1Y6 1649 aaKnown RBP13.06□□□□□ -0.32
SHROOM3-203ENST00000469923 ITSN1Q15811 1721 aa13.06□□□□□ -0.32
SHROOM3-203ENST00000469923 PSDA5PKW4 1024 aaPredicted RBP13.06□□□□□ -0.32
SHROOM3-203ENST00000469923 ZNF692Q9BU19 519 aaPredicted RBP13.06□□□□□ -0.32
SHROOM3-203ENST00000469923 NRKQ7Z2Y5 1582 aa13.06□□□□□ -0.32
SHROOM3-203ENST00000469923 NWD2Q9ULI1 1742 aa13.05□□□□□ -0.32
SHROOM3-203ENST00000469923 EZH2Q15910 746 aaKnown RBP13.05□□□□□ -0.32
SHROOM3-203ENST00000469923 TCP11L2Q8N4U5 519 aa13.04□□□□□ -0.32
SHROOM3-203ENST00000469923 PIK3C2AO00443 1686 aa13.04□□□□□ -0.32
SHROOM3-203ENST00000469923 CARD14Q9BXL6 1004 aa13.03□□□□□ -0.32
SHROOM3-203ENST00000469923 BLMP54132 1417 aaPredicted RBP13.03□□□□□ -0.32
SHROOM3-203ENST00000469923 BARGINQ6ZT62 677 aa13.02□□□□□ -0.33
SHROOM3-203ENST00000469923 TOM1L2Q6ZVM7 507 aa13.02□□□□□ -0.33
SHROOM3-203ENST00000469923 CCDC125Q86Z20 511 aa13.02□□□□□ -0.33
SHROOM3-203ENST00000469923 MARCH10Q8NA82 808 aaPredicted RBP13.02□□□□□ -0.33
SHROOM3-203ENST00000469923 A0A1W2PP64 1363 aa13.02□□□□□ -0.33
SHROOM3-203ENST00000469923 AATKQ6ZMQ8 1374 aa13.02□□□□□ -0.33
SHROOM3-203ENST00000469923 COL5A2P05997 1499 aaPredicted RBP13.02□□□□□ -0.33
SHROOM3-203ENST00000469923 LMO7Q8WWI1 1683 aa13.02□□□□□ -0.33
SHROOM3-203ENST00000469923 COL18A1P39060 1754 aa13.02□□□□□ -0.33
SHROOM3-203ENST00000469923 C11orf95C9JLR9 678 aaPredicted RBP13.01□□□□□ -0.33
SHROOM3-203ENST00000469923 LTV1Q96GA3 475 aaPredicted RBP13.01□□□□□ -0.33
SHROOM3-203ENST00000469923 SLIT3O75094 1523 aa13.01□□□□□ -0.33
SHROOM3-203ENST00000469923 USP47Q96K76 1375 aa13□□□□□ -0.33
SHROOM3-203ENST00000469923 TTC21AQ8NDW8 1320 aa13□□□□□ -0.33
SHROOM3-203ENST00000469923 CAMKK2Q96RR4 588 aa13□□□□□ -0.33
SHROOM3-203ENST00000469923 GGNBP2Q9H3C7 697 aa13□□□□□ -0.33
SHROOM3-203ENST00000469923 THSD7AQ9UPZ6 1657 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms