RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 PSME1Q06323 249 aa20.98■□□□□ 0.95
NPHP4-205ENST00000466897 SCAF1Q9H7N4 1312 aaKnown RBP20.98■□□□□ 0.95
NPHP4-205ENST00000466897 PIK3C2AO00443 1686 aa20.97■□□□□ 0.95
NPHP4-205ENST00000466897 COL22A1Q8NFW1 1626 aaPredicted RBP20.96■□□□□ 0.95
NPHP4-205ENST00000466897 SHPRHQ149N8 1683 aa20.96■□□□□ 0.95
NPHP4-205ENST00000466897 ANKRD26Q9UPS8 1709 aa20.96■□□□□ 0.95
NPHP4-205ENST00000466897 KRT28Q7Z3Y7 464 aa20.96■□□□□ 0.95
NPHP4-205ENST00000466897 TNS3Q68CZ2 1445 aa20.95■□□□□ 0.95
NPHP4-205ENST00000466897 TTC21AQ8NDW8 1320 aa20.95■□□□□ 0.94
NPHP4-205ENST00000466897 MARF1Q9Y4F3 1742 aaKnown RBP20.95■□□□□ 0.94
NPHP4-205ENST00000466897 MED1Q15648 1581 aaPredicted RBP20.94■□□□□ 0.94
NPHP4-205ENST00000466897 HSPA1LP34931 641 aa20.94■□□□□ 0.94
NPHP4-205ENST00000466897 DDX17Q92841 729 aaKnown RBP20.94■□□□□ 0.94
NPHP4-205ENST00000466897 PANK3Q9H999 370 aa20.94■□□□□ 0.94
NPHP4-205ENST00000466897 CRYBG1Q9Y4K1 1723 aa20.94■□□□□ 0.94
NPHP4-205ENST00000466897 NSD3Q9BZ95 1437 aa20.93■□□□□ 0.94
NPHP4-205ENST00000466897 CARD14Q9BXL6 1004 aa20.92■□□□□ 0.94
NPHP4-205ENST00000466897 SPATA31A3Q5VYP0 1347 aa20.92■□□□□ 0.94
NPHP4-205ENST00000466897 TTC21BQ7Z4L5 1316 aa20.92■□□□□ 0.94
NPHP4-205ENST00000466897 ARHGEF10O15013 1369 aa20.92■□□□□ 0.94
NPHP4-205ENST00000466897 ABCA3Q99758 1704 aa20.92■□□□□ 0.94
NPHP4-205ENST00000466897 LRRC59Q96AG4 307 aaKnown RBP20.91■□□□□ 0.94
NPHP4-205ENST00000466897 XPCQ01831 940 aaPredicted RBP20.9■□□□□ 0.94
NPHP4-205ENST00000466897 PER1O15534 1290 aaPredicted RBP20.89■□□□□ 0.93
NPHP4-205ENST00000466897 PHRF1Q9P1Y6 1649 aaKnown RBP20.89■□□□□ 0.93
NPHP4-205ENST00000466897 NSD2O96028 1365 aa20.88■□□□□ 0.93
NPHP4-205ENST00000466897 USP31Q70CQ4 1352 aa20.88■□□□□ 0.93
NPHP4-205ENST00000466897 NPC1L1Q9UHC9 1359 aa20.87■□□□□ 0.93
NPHP4-205ENST00000466897 CGNL1Q0VF96 1302 aa20.86■□□□□ 0.93
NPHP4-205ENST00000466897 OVOS2A0A0J9YW53 1432 aa20.86■□□□□ 0.93
NPHP4-205ENST00000466897 OVOS2Q6IE36 1432 aa20.86■□□□□ 0.93
NPHP4-205ENST00000466897 PNPLA6Q8IY17 1366 aa20.85■□□□□ 0.93
NPHP4-205ENST00000466897 JCADQ9P266 1359 aa20.85■□□□□ 0.93
NPHP4-205ENST00000466897 SLIT3O75094 1523 aa20.85■□□□□ 0.93
NPHP4-205ENST00000466897 PAK3O75914 559 aaPredicted RBP20.85■□□□□ 0.93
NPHP4-205ENST00000466897 KNSTRNQ9Y448 316 aa20.85■□□□□ 0.93
NPHP4-205ENST00000466897 DDX10Q13206 875 aaKnown RBP20.84■□□□□ 0.93
NPHP4-205ENST00000466897 ABTB2Q8N961 1025 aa20.83■□□□□ 0.93
NPHP4-205ENST00000466897 USP19O94966 1318 aa20.82■□□□□ 0.92
NPHP4-205ENST00000466897 FYB1O15117 783 aa20.82■□□□□ 0.92
NPHP4-205ENST00000466897 AMER1Q5JTC6 1135 aaPredicted RBP20.82■□□□□ 0.92
NPHP4-205ENST00000466897 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.82■□□□□ 0.92
NPHP4-205ENST00000466897 NLRP13Q86W25 1043 aa20.81■□□□□ 0.92
NPHP4-205ENST00000466897 NME9Q86XW9 330 aa20.81■□□□□ 0.92
NPHP4-205ENST00000466897 NFAT5O94916 1531 aa20.78■□□□□ 0.92
NPHP4-205ENST00000466897 NLRP6P59044 892 aa20.78■□□□□ 0.92
NPHP4-205ENST00000466897 SPATA31A6Q5VVP1 1343 aa20.78■□□□□ 0.92
NPHP4-205ENST00000466897 LTN1O94822 1766 aa20.77■□□□□ 0.92
NPHP4-205ENST00000466897 LMOD2Q6P5Q4 547 aa20.77■□□□□ 0.92
NPHP4-205ENST00000466897 COG3Q96JB2 828 aa20.76■□□□□ 0.91
NPHP4-205ENST00000466897 MAP2P11137 1827 aaKnown RBP20.76■□□□□ 0.91
NPHP4-205ENST00000466897 GGNBP2Q9H3C7 697 aa20.75■□□□□ 0.91
NPHP4-205ENST00000466897 ABCC6O95255 1503 aa20.74■□□□□ 0.91
NPHP4-205ENST00000466897 KCNH5Q8NCM2 988 aa20.74■□□□□ 0.91
NPHP4-205ENST00000466897 ZRANB1Q9UGI0 708 aa20.73■□□□□ 0.91
NPHP4-205ENST00000466897 AATKQ6ZMQ8 1374 aa20.72■□□□□ 0.91
NPHP4-205ENST00000466897 NUTM2GQ5VZR2 741 aa20.72■□□□□ 0.91
NPHP4-205ENST00000466897 CPDO75976 1380 aa20.72■□□□□ 0.91
NPHP4-205ENST00000466897 GCP02774 474 aa20.71■□□□□ 0.91
NPHP4-205ENST00000466897 COL14A1Q05707 1796 aaKnown RBP20.7■□□□□ 0.9
NPHP4-205ENST00000466897 PARD3Q8TEW0 1356 aa20.7■□□□□ 0.9
NPHP4-205ENST00000466897 COL18A1P39060 1754 aa20.69■□□□□ 0.9
NPHP4-205ENST00000466897 LRP6O75581 1613 aa20.69■□□□□ 0.9
NPHP4-205ENST00000466897 NWD2Q9ULI1 1742 aa20.69■□□□□ 0.9
NPHP4-205ENST00000466897 LMO7Q8WWI1 1683 aa20.68■□□□□ 0.9
NPHP4-205ENST00000466897 CC2D1BQ5T0F9 858 aaKnown RBP20.68■□□□□ 0.9
NPHP4-205ENST00000466897 MORC1Q86VD1 984 aa20.68■□□□□ 0.9
NPHP4-205ENST00000466897 CABLES1Q8TDN4 633 aa20.68■□□□□ 0.9
NPHP4-205ENST00000466897 KIF24Q5T7B8 1368 aa20.68■□□□□ 0.9
NPHP4-205ENST00000466897 SMG6Q86US8 1419 aaKnown RBP20.68■□□□□ 0.9
NPHP4-205ENST00000466897 PLCH1Q4KWH8 1693 aa20.67■□□□□ 0.9
NPHP4-205ENST00000466897 RGPD5Q99666 1765 aa20.65■□□□□ 0.9
NPHP4-205ENST00000466897 PEAK1Q9H792 1746 aa20.65■□□□□ 0.9
NPHP4-205ENST00000466897 HAP1P54257 671 aaPredicted RBP20.65■□□□□ 0.9
NPHP4-205ENST00000466897 RALBP1Q15311 655 aa20.65■□□□□ 0.9
NPHP4-205ENST00000466897 RTL1A6NKG5 1358 aa20.64■□□□□ 0.89
NPHP4-205ENST00000466897 ILDR2Q71H61 639 aa20.64■□□□□ 0.89
NPHP4-205ENST00000466897 ARHGEF25Q86VW2 580 aa20.64■□□□□ 0.89
NPHP4-205ENST00000466897 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.64■□□□□ 0.89
NPHP4-205ENST00000466897 KIAA0232Q92628 1395 aa20.63■□□□□ 0.89
NPHP4-205ENST00000466897 NRAPQ86VF7 1730 aa20.62■□□□□ 0.89
NPHP4-205ENST00000466897 FAM208AQ9UK61 1670 aaKnown RBP20.62■□□□□ 0.89
NPHP4-205ENST00000466897 CDK12Q9NYV4 1490 aaPredicted RBP20.62■□□□□ 0.89
NPHP4-205ENST00000466897 PRKRIP1Q9H875 184 aaPredicted RBP20.61■□□□□ 0.89
NPHP4-205ENST00000466897 BLMP54132 1417 aaPredicted RBP20.61■□□□□ 0.89
NPHP4-205ENST00000466897 MAP3K19Q56UN5 1328 aa20.6■□□□□ 0.89
NPHP4-205ENST00000466897 NUTM2BA6NNL0 878 aaPredicted RBP20.6■□□□□ 0.89
NPHP4-205ENST00000466897 NUTM2EB1AL46 878 aaPredicted RBP20.6■□□□□ 0.89
NPHP4-205ENST00000466897 NUTM2AQ8IVF1 878 aaPredicted RBP20.6■□□□□ 0.89
NPHP4-205ENST00000466897 SLIT2O94813 1529 aa20.59■□□□□ 0.89
NPHP4-205ENST00000466897 ZC3H6P61129 1189 aaKnown RBP20.59■□□□□ 0.89
NPHP4-205ENST00000466897 PRDM11Q9NQV5 511 aa20.59■□□□□ 0.89
NPHP4-205ENST00000466897 FLT4P35916 1363 aa20.59■□□□□ 0.89
NPHP4-205ENST00000466897 SOX12O15370 315 aa20.58■□□□□ 0.89
NPHP4-205ENST00000466897 PLEKHG5O94827 1062 aa20.58■□□□□ 0.89
NPHP4-205ENST00000466897 POLKQ9UBT6 870 aa20.58■□□□□ 0.89
NPHP4-205ENST00000466897 CAMTA1Q9Y6Y1 1673 aa20.58■□□□□ 0.88
NPHP4-205ENST00000466897 MYBBP1AQ9BQG0 1328 aaKnown RBP20.56■□□□□ 0.88
NPHP4-205ENST00000466897 FAM83GA6ND36 823 aa20.56■□□□□ 0.88
NPHP4-205ENST00000466897 ANP32CO43423 234 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms