RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 COL14A1Q05707 1796 aaKnown RBP19.62■□□□□ 0.73
CHD3-207ENST00000466233 ITSN1Q15811 1721 aa19.62■□□□□ 0.73
CHD3-207ENST00000466233 KRT27Q7Z3Y8 459 aa19.62■□□□□ 0.73
CHD3-207ENST00000466233 BTG4Q9NY30 223 aa19.62■□□□□ 0.73
CHD3-207ENST00000466233 BRD4O60885 1362 aaPredicted RBP19.61■□□□□ 0.73
CHD3-207ENST00000466233 CCDC9Q9Y3X0 531 aaKnown RBP19.6■□□□□ 0.73
CHD3-207ENST00000466233 PAK3O75914 559 aaPredicted RBP19.59■□□□□ 0.73
CHD3-207ENST00000466233 SF3B2Q13435 895 aaKnown RBP19.59■□□□□ 0.73
CHD3-207ENST00000466233 NBPF8Q3BBV2 869 aa19.59■□□□□ 0.73
CHD3-207ENST00000466233 SPATA31A5Q5VU36 1347 aa19.58■□□□□ 0.73
CHD3-207ENST00000466233 SPATA31A7Q8IWB4 1347 aa19.58■□□□□ 0.73
CHD3-207ENST00000466233 NRAPQ86VF7 1730 aa19.57■□□□□ 0.72
CHD3-207ENST00000466233 PRDM11Q9NQV5 511 aa19.57■□□□□ 0.72
CHD3-207ENST00000466233 ACEP12821 1306 aa19.56■□□□□ 0.72
CHD3-207ENST00000466233 NBPF1Q3BBV0 1214 aa19.56■□□□□ 0.72
CHD3-207ENST00000466233 CRYBG1Q9Y4K1 1723 aa19.56■□□□□ 0.72
CHD3-207ENST00000466233 CENPJQ9HC77 1338 aaPredicted RBP19.55■□□□□ 0.72
CHD3-207ENST00000466233 TOPAZ1Q8N9V7 1692 aa19.55■□□□□ 0.72
CHD3-207ENST00000466233 BRWD3Q6RI45 1802 aa19.53■□□□□ 0.72
CHD3-207ENST00000466233 PLEKHG5O94827 1062 aa19.53■□□□□ 0.72
CHD3-207ENST00000466233 FAM98CQ17RN3 349 aaKnown RBP19.53■□□□□ 0.72
CHD3-207ENST00000466233 CPDO75976 1380 aa19.53■□□□□ 0.72
CHD3-207ENST00000466233 KIAA0232Q92628 1395 aa19.53■□□□□ 0.72
CHD3-207ENST00000466233 USP19O94966 1318 aa19.51■□□□□ 0.71
CHD3-207ENST00000466233 SPATA31A1Q5TZJ5 1347 aa19.51■□□□□ 0.71
CHD3-207ENST00000466233 BAG6P46379 1132 aa19.5■□□□□ 0.71
CHD3-207ENST00000466233 BARGINQ6ZT62 677 aa19.5■□□□□ 0.71
CHD3-207ENST00000466233 NLRP13Q86W25 1043 aa19.5■□□□□ 0.71
CHD3-207ENST00000466233 ABTB2Q8N961 1025 aa19.5■□□□□ 0.71
CHD3-207ENST00000466233 L3MBTL2Q969R5 705 aa19.5■□□□□ 0.71
CHD3-207ENST00000466233 SRPK2P78362 688 aaKnown RBP19.49■□□□□ 0.71
CHD3-207ENST00000466233 SRCAPQ6ZRS2 3230 aa19.49■□□□□ 0.71
CHD3-207ENST00000466233 A0A0G2JS52 829 aa19.48■□□□□ 0.71
CHD3-207ENST00000466233 MYT1Q01538 1121 aa19.48■□□□□ 0.71
CHD3-207ENST00000466233 DEFB132Q7Z7B7 95 aa19.48■□□□□ 0.71
CHD3-207ENST00000466233 THSD7AQ9UPZ6 1657 aa19.48■□□□□ 0.71
CHD3-207ENST00000466233 DISP2A7MBM2 1401 aa19.48■□□□□ 0.71
CHD3-207ENST00000466233 PPIP5K1Q6PFW1 1433 aa19.48■□□□□ 0.71
CHD3-207ENST00000466233 PHRF1Q9P1Y6 1649 aaKnown RBP19.47■□□□□ 0.71
CHD3-207ENST00000466233 THRAP3Q9Y2W1 955 aaKnown RBP19.46■□□□□ 0.71
CHD3-207ENST00000466233 EVC2Q86UK5 1308 aa19.46■□□□□ 0.71
CHD3-207ENST00000466233 C11orf95C9JLR9 678 aaPredicted RBP19.45■□□□□ 0.7
CHD3-207ENST00000466233 ZC3H6P61129 1189 aaKnown RBP19.45■□□□□ 0.7
CHD3-207ENST00000466233 FAM196AQ6ZSG2 479 aa19.45■□□□□ 0.7
CHD3-207ENST00000466233 GCP02774 474 aa19.44■□□□□ 0.7
CHD3-207ENST00000466233 EVA1CP58658 441 aa19.44■□□□□ 0.7
CHD3-207ENST00000466233 CHRNA2Q15822 529 aa19.44■□□□□ 0.7
CHD3-207ENST00000466233 ZNF692Q9BU19 519 aaPredicted RBP19.44■□□□□ 0.7
CHD3-207ENST00000466233 CABP2Q9NPB3 220 aa19.44■□□□□ 0.7
CHD3-207ENST00000466233 USP6P35125 1406 aa19.43■□□□□ 0.7
CHD3-207ENST00000466233 SSH2Q76I76 1423 aa19.43■□□□□ 0.7
CHD3-207ENST00000466233 NRKQ7Z2Y5 1582 aa19.43■□□□□ 0.7
CHD3-207ENST00000466233 CABP1Q9NZU7 370 aa19.42■□□□□ 0.7
CHD3-207ENST00000466233 NUTM2GQ5VZR2 741 aa19.41■□□□□ 0.7
CHD3-207ENST00000466233 TCP11L2Q8N4U5 519 aa19.41■□□□□ 0.7
CHD3-207ENST00000466233 STRN4Q9NRL3 753 aa19.41■□□□□ 0.7
CHD3-207ENST00000466233 PARD3Q8TEW0 1356 aa19.41■□□□□ 0.7
CHD3-207ENST00000466233 LMO7Q8WWI1 1683 aa19.4■□□□□ 0.7
CHD3-207ENST00000466233 CAMTA1Q9Y6Y1 1673 aa19.4■□□□□ 0.7
CHD3-207ENST00000466233 AATKQ6ZMQ8 1374 aa19.4■□□□□ 0.7
CHD3-207ENST00000466233 SBNO2Q9Y2G9 1366 aa19.4■□□□□ 0.7
CHD3-207ENST00000466233 QRICH2Q9H0J4 1663 aa19.4■□□□□ 0.7
CHD3-207ENST00000466233 RGPD1P0DJD0 1748 aa19.39■□□□□ 0.7
CHD3-207ENST00000466233 ROCK2O75116 1388 aaKnown RBP19.39■□□□□ 0.69
CHD3-207ENST00000466233 TRPM1Q7Z4N2 1603 aa19.38■□□□□ 0.69
CHD3-207ENST00000466233 SIN3AQ96ST3 1273 aa19.38■□□□□ 0.69
CHD3-207ENST00000466233 SLIT3O75094 1523 aa19.37■□□□□ 0.69
CHD3-207ENST00000466233 NLRP6P59044 892 aa19.37■□□□□ 0.69
CHD3-207ENST00000466233 PDE3BQ13370 1112 aa19.37■□□□□ 0.69
CHD3-207ENST00000466233 LARP1Q6PKG0 1096 aaKnown RBP19.37■□□□□ 0.69
CHD3-207ENST00000466233 COL5A2P05997 1499 aaPredicted RBP19.36■□□□□ 0.69
CHD3-207ENST00000466233 TTC21AQ8NDW8 1320 aa19.36■□□□□ 0.69
CHD3-207ENST00000466233 KCNH5Q8NCM2 988 aa19.36■□□□□ 0.69
CHD3-207ENST00000466233 EN1Q05925 392 aaPredicted RBP19.35■□□□□ 0.69
CHD3-207ENST00000466233 CRB1P82279 1406 aa19.34■□□□□ 0.69
CHD3-207ENST00000466233 LRP5O75197 1615 aa19.34■□□□□ 0.69
CHD3-207ENST00000466233 CAMKK2Q96RR4 588 aa19.34■□□□□ 0.69
CHD3-207ENST00000466233 CPSF1Q10570 1443 aaKnown RBP19.34■□□□□ 0.69
CHD3-207ENST00000466233 FAM182BQ5T319 152 aa19.33■□□□□ 0.68
CHD3-207ENST00000466233 PUS7Q96PZ0 661 aaKnown RBP19.33■□□□□ 0.68
CHD3-207ENST00000466233 USP35Q9P2H5 1018 aa19.33■□□□□ 0.68
CHD3-207ENST00000466233 NEUROD1Q13562 356 aa19.32■□□□□ 0.68
CHD3-207ENST00000466233 CDCA7Q9BWT1 371 aaPredicted RBP19.32■□□□□ 0.68
CHD3-207ENST00000466233 TTC21BQ7Z4L5 1316 aa19.31■□□□□ 0.68
CHD3-207ENST00000466233 TRIM37O94972 964 aa19.31■□□□□ 0.68
CHD3-207ENST00000466233 ARHGEF25Q86VW2 580 aa19.31■□□□□ 0.68
CHD3-207ENST00000466233 TNS1Q9HBL0 1735 aaKnown RBP19.31■□□□□ 0.68
CHD3-207ENST00000466233 SLC24A1O60721 1099 aa19.29■□□□□ 0.68
CHD3-207ENST00000466233 APBA3O96018 575 aa19.29■□□□□ 0.68
CHD3-207ENST00000466233 WDR17Q8IZU2 1322 aa19.28■□□□□ 0.68
CHD3-207ENST00000466233 BCL9O00512 1426 aa19.28■□□□□ 0.68
CHD3-207ENST00000466233 EZH2Q15910 746 aaKnown RBP19.28■□□□□ 0.68
CHD3-207ENST00000466233 ABCC6O95255 1503 aa19.28■□□□□ 0.68
CHD3-207ENST00000466233 PARP4Q9UKK3 1724 aaKnown RBP19.28■□□□□ 0.68
CHD3-207ENST00000466233 PIK3C2AO00443 1686 aa19.27■□□□□ 0.67
CHD3-207ENST00000466233 USP31Q70CQ4 1352 aa19.26■□□□□ 0.67
CHD3-207ENST00000466233 OVOS2A0A0G2JMS6 1433 aa19.25■□□□□ 0.67
CHD3-207ENST00000466233 OVOS2A0A0J9YW53 1432 aa19.25■□□□□ 0.67
CHD3-207ENST00000466233 OVOS2Q6IE36 1432 aa19.25■□□□□ 0.67
CHD3-207ENST00000466233 KTN1Q86UP2 1357 aaKnown RBP19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms