RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 FAM83GA6ND36 823 aa25.37■■□□□ 1.65
COL7A1-205ENST00000465238 NUDT16Q96DE0 195 aaKnown RBP25.37■■□□□ 1.65
COL7A1-205ENST00000465238 CCDC9Q9Y3X0 531 aaKnown RBP25.35■■□□□ 1.65
COL7A1-205ENST00000465238 BRWD3Q6RI45 1802 aa25.35■■□□□ 1.65
COL7A1-205ENST00000465238 CDK19Q9BWU1 502 aa25.34■■□□□ 1.65
COL7A1-205ENST00000465238 COL14A1Q05707 1796 aaKnown RBP25.33■■□□□ 1.65
COL7A1-205ENST00000465238 ONECUT3O60422 494 aaPredicted RBP25.33■■□□□ 1.65
COL7A1-205ENST00000465238 PAK3O75914 559 aaPredicted RBP25.33■■□□□ 1.65
COL7A1-205ENST00000465238 SEPT12Q8IYM1 358 aa25.33■■□□□ 1.65
COL7A1-205ENST00000465238 NRAPQ86VF7 1730 aa25.32■■□□□ 1.64
COL7A1-205ENST00000465238 CRYBG1Q9Y4K1 1723 aa25.32■■□□□ 1.64
COL7A1-205ENST00000465238 NBPF1Q3BBV0 1214 aa25.3■■□□□ 1.64
COL7A1-205ENST00000465238 BTG4Q9NY30 223 aa25.3■■□□□ 1.64
COL7A1-205ENST00000465238 TOPAZ1Q8N9V7 1692 aa25.29■■□□□ 1.64
COL7A1-205ENST00000465238 CCDC61Q9Y6R9 512 aa25.29■■□□□ 1.64
COL7A1-205ENST00000465238 BLMP54132 1417 aaPredicted RBP25.29■■□□□ 1.64
COL7A1-205ENST00000465238 POLR3AO14802 1390 aaPredicted RBP25.28■■□□□ 1.64
COL7A1-205ENST00000465238 PLEKHG3A1L390 1219 aa25.25■■□□□ 1.63
COL7A1-205ENST00000465238 KRT27Q7Z3Y8 459 aa25.25■■□□□ 1.63
COL7A1-205ENST00000465238 PRDM11Q9NQV5 511 aa25.25■■□□□ 1.63
COL7A1-205ENST00000465238 ZRANB1Q9UGI0 708 aa25.25■■□□□ 1.63
COL7A1-205ENST00000465238 ACEP12821 1306 aa25.25■■□□□ 1.63
COL7A1-205ENST00000465238 CENPJQ9HC77 1338 aaPredicted RBP25.24■■□□□ 1.63
COL7A1-205ENST00000465238 NBPF8Q3BBV2 869 aa25.24■■□□□ 1.63
COL7A1-205ENST00000465238 TIMELESSQ9UNS1 1208 aa25.23■■□□□ 1.63
COL7A1-205ENST00000465238 SRCAPQ6ZRS2 3230 aa25.23■■□□□ 1.63
COL7A1-205ENST00000465238 PHRF1Q9P1Y6 1649 aaKnown RBP25.23■■□□□ 1.63
COL7A1-205ENST00000465238 A0A0G2JS52 829 aa25.22■■□□□ 1.63
COL7A1-205ENST00000465238 MYT1Q01538 1121 aa25.22■■□□□ 1.63
COL7A1-205ENST00000465238 SF3B2Q13435 895 aaKnown RBP25.21■■□□□ 1.63
COL7A1-205ENST00000465238 FAM98CQ17RN3 349 aaKnown RBP25.21■■□□□ 1.63
COL7A1-205ENST00000465238 SPATA31A5Q5VU36 1347 aa25.2■■□□□ 1.62
COL7A1-205ENST00000465238 SPATA31A7Q8IWB4 1347 aa25.2■■□□□ 1.62
COL7A1-205ENST00000465238 SRPK2P78362 688 aaKnown RBP25.2■■□□□ 1.62
COL7A1-205ENST00000465238 KIAA0232Q92628 1395 aa25.19■■□□□ 1.62
COL7A1-205ENST00000465238 QRICH2Q9H0J4 1663 aa25.19■■□□□ 1.62
COL7A1-205ENST00000465238 TRPM1Q7Z4N2 1603 aa25.17■■□□□ 1.62
COL7A1-205ENST00000465238 NUTM2GQ5VZR2 741 aa25.17■■□□□ 1.62
COL7A1-205ENST00000465238 PPIP5K1Q6PFW1 1433 aa25.17■■□□□ 1.62
COL7A1-205ENST00000465238 ABTB2Q8N961 1025 aa25.16■■□□□ 1.62
COL7A1-205ENST00000465238 ZC3H6P61129 1189 aaKnown RBP25.15■■□□□ 1.62
COL7A1-205ENST00000465238 CHRNA2Q15822 529 aa25.14■■□□□ 1.62
COL7A1-205ENST00000465238 DEFB132Q7Z7B7 95 aa25.14■■□□□ 1.62
COL7A1-205ENST00000465238 CABP2Q9NPB3 220 aa25.14■■□□□ 1.62
COL7A1-205ENST00000465238 BRD4O60885 1362 aaPredicted RBP25.14■■□□□ 1.61
COL7A1-205ENST00000465238 ROCK2O75116 1388 aaKnown RBP25.14■■□□□ 1.61
COL7A1-205ENST00000465238 THSD7AQ9UPZ6 1657 aa25.13■■□□□ 1.61
COL7A1-205ENST00000465238 NRKQ7Z2Y5 1582 aa25.13■■□□□ 1.61
COL7A1-205ENST00000465238 USP19O94966 1318 aa25.12■■□□□ 1.61
COL7A1-205ENST00000465238 SPATA31A1Q5TZJ5 1347 aa25.12■■□□□ 1.61
COL7A1-205ENST00000465238 NLRP13Q86W25 1043 aa25.11■■□□□ 1.61
COL7A1-205ENST00000465238 CPDO75976 1380 aa25.1■■□□□ 1.61
COL7A1-205ENST00000465238 STRN4Q9NRL3 753 aa25.1■■□□□ 1.61
COL7A1-205ENST00000465238 BAG6P46379 1132 aa25.08■■□□□ 1.61
COL7A1-205ENST00000465238 CABP1Q9NZU7 370 aa25.08■■□□□ 1.61
COL7A1-205ENST00000465238 EVC2Q86UK5 1308 aa25.08■■□□□ 1.6
COL7A1-205ENST00000465238 USP6P35125 1406 aa25.06■■□□□ 1.6
COL7A1-205ENST00000465238 SSH2Q76I76 1423 aa25.06■■□□□ 1.6
COL7A1-205ENST00000465238 EVA1CP58658 441 aa25.06■■□□□ 1.6
COL7A1-205ENST00000465238 CARD11Q9BXL7 1154 aa25.06■■□□□ 1.6
COL7A1-205ENST00000465238 RGPD1P0DJD0 1748 aa25.06■■□□□ 1.6
COL7A1-205ENST00000465238 LMO7Q8WWI1 1683 aa25.05■■□□□ 1.6
COL7A1-205ENST00000465238 CAMTA1Q9Y6Y1 1673 aa25.05■■□□□ 1.6
COL7A1-205ENST00000465238 GCP02774 474 aa25.05■■□□□ 1.6
COL7A1-205ENST00000465238 FAM182BQ5T319 152 aa25.03■■□□□ 1.6
COL7A1-205ENST00000465238 BARGINQ6ZT62 677 aa25.02■■□□□ 1.6
COL7A1-205ENST00000465238 USP35Q9P2H5 1018 aa25.01■■□□□ 1.59
COL7A1-205ENST00000465238 NLRP6P59044 892 aa25■■□□□ 1.59
COL7A1-205ENST00000465238 LARP1Q6PKG0 1096 aaKnown RBP24.99■■□□□ 1.59
COL7A1-205ENST00000465238 SLIT3O75094 1523 aa24.98■■□□□ 1.59
COL7A1-205ENST00000465238 FAM196AQ6ZSG2 479 aa24.98■■□□□ 1.59
COL7A1-205ENST00000465238 TCP11L2Q8N4U5 519 aa24.98■■□□□ 1.59
COL7A1-205ENST00000465238 TNS1Q9HBL0 1735 aaKnown RBP24.98■■□□□ 1.59
COL7A1-205ENST00000465238 DISP2A7MBM2 1401 aa24.97■■□□□ 1.59
COL7A1-205ENST00000465238 ZNF692Q9BU19 519 aaPredicted RBP24.97■■□□□ 1.59
COL7A1-205ENST00000465238 THRAP3Q9Y2W1 955 aaKnown RBP24.97■■□□□ 1.59
COL7A1-205ENST00000465238 COL5A2P05997 1499 aaPredicted RBP24.96■■□□□ 1.59
COL7A1-205ENST00000465238 EN1Q05925 392 aaPredicted RBP24.96■■□□□ 1.59
COL7A1-205ENST00000465238 PIK3C2AO00443 1686 aa24.96■■□□□ 1.59
COL7A1-205ENST00000465238 PDE3BQ13370 1112 aa24.95■■□□□ 1.58
COL7A1-205ENST00000465238 AKAP12Q02952 1782 aa24.95■■□□□ 1.58
COL7A1-205ENST00000465238 AATKQ6ZMQ8 1374 aa24.94■■□□□ 1.58
COL7A1-205ENST00000465238 SBNO2Q9Y2G9 1366 aa24.93■■□□□ 1.58
COL7A1-205ENST00000465238 CRB1P82279 1406 aa24.92■■□□□ 1.58
COL7A1-205ENST00000465238 TTC21BQ7Z4L5 1316 aa24.91■■□□□ 1.58
COL7A1-205ENST00000465238 ZBTB7CA1YPR0 619 aa24.91■■□□□ 1.58
COL7A1-205ENST00000465238 TRIM37O94972 964 aa24.91■■□□□ 1.58
COL7A1-205ENST00000465238 TTC21AQ8NDW8 1320 aa24.9■■□□□ 1.58
COL7A1-205ENST00000465238 PARP4Q9UKK3 1724 aaKnown RBP24.9■■□□□ 1.58
COL7A1-205ENST00000465238 CPSF1Q10570 1443 aaKnown RBP24.9■■□□□ 1.58
COL7A1-205ENST00000465238 KCNH5Q8NCM2 988 aa24.89■■□□□ 1.58
COL7A1-205ENST00000465238 COL18A1P39060 1754 aa24.89■■□□□ 1.57
COL7A1-205ENST00000465238 LRP5O75197 1615 aa24.88■■□□□ 1.57
COL7A1-205ENST00000465238 PSDA5PKW4 1024 aaPredicted RBP24.88■■□□□ 1.57
COL7A1-205ENST00000465238 KTN1Q86UP2 1357 aaKnown RBP24.87■■□□□ 1.57
COL7A1-205ENST00000465238 PARD3Q8TEW0 1356 aa24.87■■□□□ 1.57
COL7A1-205ENST00000465238 APBA3O96018 575 aa24.86■■□□□ 1.57
COL7A1-205ENST00000465238 EZH2Q15910 746 aaKnown RBP24.86■■□□□ 1.57
COL7A1-205ENST00000465238 CAMKK2Q96RR4 588 aa24.86■■□□□ 1.57
COL7A1-205ENST00000465238 C11orf95C9JLR9 678 aaPredicted RBP24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms