RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 PRKD2Q9BZL6 878 aa12.51□□□□□ -0.41
PTCD3-205ENST00000464541 FKBPLQ9UIM3 349 aa12.51□□□□□ -0.41
PTCD3-205ENST00000464541 NDUFB9Q9Y6M9 179 aa12.51□□□□□ -0.41
PTCD3-205ENST00000464541 EMID1Q96A84 441 aaPredicted RBP12.5□□□□□ -0.41
PTCD3-205ENST00000464541 WNT7BP56706 349 aa12.49□□□□□ -0.41
PTCD3-205ENST00000464541 SPRYD7Q5W111 196 aa12.48□□□□□ -0.41
PTCD3-205ENST00000464541 EPS8L1Q8TE68 723 aa12.47□□□□□ -0.41
PTCD3-205ENST00000464541 ZNF598Q86UK7 904 aaKnown RBP12.46□□□□□ -0.41
PTCD3-205ENST00000464541 UBTFP17480 764 aaKnown RBP12.45□□□□□ -0.42
PTCD3-205ENST00000464541 PDXDC2PQ6P474 469 aa12.45□□□□□ -0.42
PTCD3-205ENST00000464541 ZNF511Q8NB15 262 aa12.45□□□□□ -0.42
PTCD3-205ENST00000464541 BAP1Q92560 729 aa12.45□□□□□ -0.42
PTCD3-205ENST00000464541 GPSM3Q9Y4H4 160 aa12.45□□□□□ -0.42
PTCD3-205ENST00000464541 RAD21O60216 631 aa12.43□□□□□ -0.42
PTCD3-205ENST00000464541 SH3BP2P78314 561 aa12.42□□□□□ -0.42
PTCD3-205ENST00000464541 ERICH6Q7L0X2 663 aa12.42□□□□□ -0.42
PTCD3-205ENST00000464541 BPHLQ86WA6 291 aaPredicted RBP12.42□□□□□ -0.42
PTCD3-205ENST00000464541 PTK2Q05397 1052 aa12.41□□□□□ -0.42
PTCD3-205ENST00000464541 ZNF697Q5TEC3 545 aa12.41□□□□□ -0.42
PTCD3-205ENST00000464541 COG6Q9Y2V7 657 aa12.41□□□□□ -0.42
PTCD3-205ENST00000464541 SKOR1P84550 965 aa12.4□□□□□ -0.42
PTCD3-205ENST00000464541 LINC01559Q495D7 138 aa12.4□□□□□ -0.42
PTCD3-205ENST00000464541 SH3BP5LQ7L8J4 393 aa12.4□□□□□ -0.42
PTCD3-205ENST00000464541 TBC1D2BQ9UPU7 963 aa12.4□□□□□ -0.42
PTCD3-205ENST00000464541 WNT7AO00755 349 aa12.39□□□□□ -0.43
PTCD3-205ENST00000464541 GPR37L1O60883 481 aa12.39□□□□□ -0.43
PTCD3-205ENST00000464541 GDPD2Q9HCC8 539 aa12.39□□□□□ -0.43
PTCD3-205ENST00000464541 SH3RF1Q7Z6J0 888 aa12.38□□□□□ -0.43
PTCD3-205ENST00000464541 WWC1Q8IX03 1113 aa12.38□□□□□ -0.43
PTCD3-205ENST00000464541 VARSP26640 1264 aaKnown RBP12.37□□□□□ -0.43
PTCD3-205ENST00000464541 RC3H1Q5TC82 1133 aaKnown RBP12.37□□□□□ -0.43
PTCD3-205ENST00000464541 A6NJR5 290 aa12.35□□□□□ -0.43
PTCD3-205ENST00000464541 ZBBXA8MT70 800 aa12.35□□□□□ -0.43
PTCD3-205ENST00000464541 AGERQ15109 404 aa12.35□□□□□ -0.43
PTCD3-205ENST00000464541 EHBP1Q8NDI1 1231 aa12.35□□□□□ -0.43
PTCD3-205ENST00000464541 ARHGAP9Q9BRR9 750 aa12.35□□□□□ -0.43
PTCD3-205ENST00000464541 ABL2P42684 1182 aa12.34□□□□□ -0.43
PTCD3-205ENST00000464541 WASHC4Q2M389 1173 aa12.34□□□□□ -0.43
PTCD3-205ENST00000464541 ZNF592Q92610 1267 aa12.34□□□□□ -0.43
PTCD3-205ENST00000464541 FOXJ1Q92949 421 aa12.34□□□□□ -0.43
PTCD3-205ENST00000464541 PRR20EP86478 221 aa12.33□□□□□ -0.44
PTCD3-205ENST00000464541 PRR20CP86479 221 aa12.33□□□□□ -0.44
PTCD3-205ENST00000464541 PRR20DP86480 221 aa12.33□□□□□ -0.44
PTCD3-205ENST00000464541 PRR20BP86481 221 aa12.33□□□□□ -0.44
PTCD3-205ENST00000464541 PRR20AP86496 221 aa12.33□□□□□ -0.44
PTCD3-205ENST00000464541 NR1H3Q13133 447 aa12.33□□□□□ -0.44
PTCD3-205ENST00000464541 FAM174AQ8TBP5 190 aa12.33□□□□□ -0.44
PTCD3-205ENST00000464541 POM121Q96HA1 1249 aa12.33□□□□□ -0.44
PTCD3-205ENST00000464541 C1QTNF2Q9BXJ5 285 aa12.33□□□□□ -0.44
PTCD3-205ENST00000464541 IRF5Q13568 498 aa12.32□□□□□ -0.44
PTCD3-205ENST00000464541 MPNDQ8N594 471 aa12.32□□□□□ -0.44
PTCD3-205ENST00000464541 PKD2L1Q9P0L9 805 aa12.32□□□□□ -0.44
PTCD3-205ENST00000464541 ZNF330Q9Y3S2 320 aaPredicted RBP12.32□□□□□ -0.44
PTCD3-205ENST00000464541 GDF9O60383 454 aa12.31□□□□□ -0.44
PTCD3-205ENST00000464541 C4orf48Q5BLP8 95 aa12.31□□□□□ -0.44
PTCD3-205ENST00000464541 ZBTB33Q86T24 672 aa12.31□□□□□ -0.44
PTCD3-205ENST00000464541 TRMT44Q8IYL2 757 aaKnown RBP12.31□□□□□ -0.44
PTCD3-205ENST00000464541 FBXO45P0C2W1 286 aa12.3□□□□□ -0.44
PTCD3-205ENST00000464541 MCCD1P59942 119 aaPredicted RBP12.3□□□□□ -0.44
PTCD3-205ENST00000464541 MRGPRX2Q96LB1 330 aa12.3□□□□□ -0.44
PTCD3-205ENST00000464541 OCSTAMPQ9BR26 566 aa12.3□□□□□ -0.44
PTCD3-205ENST00000464541 MAGEB6P1A0A0J9YX57 407 aa12.29□□□□□ -0.44
PTCD3-205ENST00000464541 PROSER2Q86WR7 435 aaPredicted RBP12.29□□□□□ -0.44
PTCD3-205ENST00000464541 ADAM32Q8TC27 787 aa12.29□□□□□ -0.44
PTCD3-205ENST00000464541 CLUAP1Q96AJ1 413 aa12.29□□□□□ -0.44
PTCD3-205ENST00000464541 CDV3Q9UKY7 258 aaKnown RBP12.29□□□□□ -0.44
PTCD3-205ENST00000464541 SIAH2O43255 324 aa12.28□□□□□ -0.44
PTCD3-205ENST00000464541 FOXC1Q12948 553 aa12.28□□□□□ -0.44
PTCD3-205ENST00000464541 ERFEQ4G0M1 354 aa12.28□□□□□ -0.44
PTCD3-205ENST00000464541 TRIM67Q6ZTA4 783 aa12.27□□□□□ -0.45
PTCD3-205ENST00000464541 CARD14Q9BXL6 1004 aa12.27□□□□□ -0.45
PTCD3-205ENST00000464541 SOX11P35716 441 aa12.26□□□□□ -0.45
PTCD3-205ENST00000464541 C14orf37Q86TY3 774 aa12.26□□□□□ -0.45
PTCD3-205ENST00000464541 FNBP4Q8N3X1 1017 aaPredicted RBP12.26□□□□□ -0.45
PTCD3-205ENST00000464541 SNIP1Q8TAD8 396 aaKnown RBP12.26□□□□□ -0.45
PTCD3-205ENST00000464541 ZMYND15Q9H091 742 aa12.26□□□□□ -0.45
PTCD3-205ENST00000464541 MAP4K5Q9Y4K4 846 aa12.26□□□□□ -0.45
PTCD3-205ENST00000464541 EIF4G2P78344 907 aaKnown RBP eCLIP12.25□□□□□ -0.45
PTCD3-205ENST00000464541 CYP4X1Q8N118 509 aa12.25□□□□□ -0.45
PTCD3-205ENST00000464541 SLC10A4Q96EP9 437 aa12.25□□□□□ -0.45
PTCD3-205ENST00000464541 CDK15Q96Q40 435 aa12.25□□□□□ -0.45
PTCD3-205ENST00000464541 LAPTM4AQ15012 233 aa12.24□□□□□ -0.45
PTCD3-205ENST00000464541 PDZRN3Q9UPQ7 1066 aa12.24□□□□□ -0.45
PTCD3-205ENST00000464541 TOR4AQ9NXH8 423 aa12.23□□□□□ -0.45
PTCD3-205ENST00000464541 TNFRSF10AO00220 468 aa12.22□□□□□ -0.45
PTCD3-205ENST00000464541 DZIP3Q86Y13 1208 aaKnown RBP12.22□□□□□ -0.45
PTCD3-205ENST00000464541 VAC14Q08AM6 782 aa12.21□□□□□ -0.45
PTCD3-205ENST00000464541 NBPF20Q3BBV1 942 aa12.21□□□□□ -0.45
PTCD3-205ENST00000464541 TTC24A2A3L6 582 aaPredicted RBP12.2□□□□□ -0.46
PTCD3-205ENST00000464541 PCDHB9Q9Y5E1 797 aa12.2□□□□□ -0.46
PTCD3-205ENST00000464541 NRG2O14511 850 aaPredicted RBP12.19□□□□□ -0.46
PTCD3-205ENST00000464541 TRAK2O60296 914 aa12.19□□□□□ -0.46
PTCD3-205ENST00000464541 TLL2Q9Y6L7 1015 aa12.19□□□□□ -0.46
PTCD3-205ENST00000464541 ADH1CP00326 375 aa12.18□□□□□ -0.46
PTCD3-205ENST00000464541 VASH1Q7L8A9 365 aaPredicted RBP12.18□□□□□ -0.46
PTCD3-205ENST00000464541 CCDC125Q86Z20 511 aa12.18□□□□□ -0.46
PTCD3-205ENST00000464541 ALDH1A1P00352 501 aa12.17□□□□□ -0.46
PTCD3-205ENST00000464541 NR5A1Q13285 461 aa12.17□□□□□ -0.46
PTCD3-205ENST00000464541 GFRA3O60609 400 aa12.16□□□□□ -0.46
PTCD3-205ENST00000464541 ARID5BQ14865 1188 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 139 ms