RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 MCM4P33991 863 aa12.97□□□□□ -0.33
PTPRE-205ENST00000463727 PUS7Q96PZ0 661 aaKnown RBP12.96□□□□□ -0.33
PTPRE-205ENST00000463727 SBNO2Q9Y2G9 1366 aa12.96□□□□□ -0.33
PTPRE-205ENST00000463727 CHD1LQ86WJ1 897 aa12.96□□□□□ -0.33
PTPRE-205ENST00000463727 C1orf115Q9H7X2 142 aa12.96□□□□□ -0.33
PTPRE-205ENST00000463727 KDM5AP29375 1690 aaKnown RBP12.96□□□□□ -0.33
PTPRE-205ENST00000463727 LAMC1P11047 1609 aa12.96□□□□□ -0.34
PTPRE-205ENST00000463727 ZNF428Q96B54 188 aa12.95□□□□□ -0.34
PTPRE-205ENST00000463727 GCC1Q96CN9 775 aa12.95□□□□□ -0.34
PTPRE-205ENST00000463727 RSPH6AQ9H0K4 717 aa12.95□□□□□ -0.34
PTPRE-205ENST00000463727 ZNF518AQ6AHZ1 1483 aa12.95□□□□□ -0.34
PTPRE-205ENST00000463727 FYB1O15117 783 aa12.94□□□□□ -0.34
PTPRE-205ENST00000463727 TWISTNBQ3B726 338 aaPredicted RBP12.94□□□□□ -0.34
PTPRE-205ENST00000463727 HDAC1Q13547 482 aaPredicted RBP12.94□□□□□ -0.34
PTPRE-205ENST00000463727 SKOR2Q2VWA4 1001 aaPredicted RBP12.94□□□□□ -0.34
PTPRE-205ENST00000463727 GLIPR1L2Q4G1C9 344 aa12.94□□□□□ -0.34
PTPRE-205ENST00000463727 E9PCH4 1651 aa12.94□□□□□ -0.34
PTPRE-205ENST00000463727 NUTM2FA1L443 756 aa12.94□□□□□ -0.34
PTPRE-205ENST00000463727 HMMRO75330 724 aa12.94□□□□□ -0.34
PTPRE-205ENST00000463727 ALDH1L2Q3SY69 923 aa12.94□□□□□ -0.34
PTPRE-205ENST00000463727 SLC4A10Q6U841 1118 aa12.94□□□□□ -0.34
PTPRE-205ENST00000463727 FAM43AQ8N2R8 423 aa12.94□□□□□ -0.34
PTPRE-205ENST00000463727 THUMPD2Q9BTF0 503 aaKnown RBP12.93□□□□□ -0.34
PTPRE-205ENST00000463727 IL16Q14005 1332 aa12.93□□□□□ -0.34
PTPRE-205ENST00000463727 C14orf37Q86TY3 774 aa12.93□□□□□ -0.34
PTPRE-205ENST00000463727 NFE2L2Q16236 605 aa12.92□□□□□ -0.34
PTPRE-205ENST00000463727 UGGT1Q9NYU2 1555 aa12.92□□□□□ -0.34
PTPRE-205ENST00000463727 MRE11P49959 708 aa12.92□□□□□ -0.34
PTPRE-205ENST00000463727 DDX49Q9Y6V7 483 aaKnown RBP12.92□□□□□ -0.34
PTPRE-205ENST00000463727 CDC45O75419 566 aa12.91□□□□□ -0.34
PTPRE-205ENST00000463727 MADDQ8WXG6 1647 aa12.91□□□□□ -0.34
PTPRE-205ENST00000463727 MYOM2P54296 1465 aa12.91□□□□□ -0.34
PTPRE-205ENST00000463727 INO80Q9ULG1 1556 aaPredicted RBP12.91□□□□□ -0.34
PTPRE-205ENST00000463727 ST18O60284 1047 aa12.91□□□□□ -0.34
PTPRE-205ENST00000463727 STK31Q9BXU1 1019 aa12.91□□□□□ -0.34
PTPRE-205ENST00000463727 CYB5RLQ6IPT4 315 aa12.9□□□□□ -0.34
PTPRE-205ENST00000463727 MCCP23508 829 aa12.9□□□□□ -0.34
PTPRE-205ENST00000463727 CLTCL1P53675 1640 aa12.9□□□□□ -0.34
PTPRE-205ENST00000463727 WAPLQ7Z5K2 1190 aa12.89□□□□□ -0.35
PTPRE-205ENST00000463727 A0A1W2PP64 1363 aa12.89□□□□□ -0.35
PTPRE-205ENST00000463727 TRHP20396 242 aaPredicted RBP12.89□□□□□ -0.35
PTPRE-205ENST00000463727 NCBP3Q53F19 620 aaKnown RBP12.89□□□□□ -0.35
PTPRE-205ENST00000463727 FBLN1P23142 703 aa12.88□□□□□ -0.35
PTPRE-205ENST00000463727 SMC5Q8IY18 1101 aa12.88□□□□□ -0.35
PTPRE-205ENST00000463727 FBXO31Q5XUX0 539 aaPredicted RBP12.88□□□□□ -0.35
PTPRE-205ENST00000463727 INTS3Q68E01 1043 aaKnown RBP12.88□□□□□ -0.35
PTPRE-205ENST00000463727 NPATQ14207 1427 aa12.88□□□□□ -0.35
PTPRE-205ENST00000463727 MSNP26038 577 aaKnown RBP12.87□□□□□ -0.35
PTPRE-205ENST00000463727 ZBTB40Q9NUA8 1239 aa12.87□□□□□ -0.35
PTPRE-205ENST00000463727 TET3O43151 1660 aa12.87□□□□□ -0.35
PTPRE-205ENST00000463727 ZBTB7CA1YPR0 619 aa12.87□□□□□ -0.35
PTPRE-205ENST00000463727 NUCB1Q02818 461 aa12.87□□□□□ -0.35
PTPRE-205ENST00000463727 TXNDC2Q86VQ3 553 aa12.87□□□□□ -0.35
PTPRE-205ENST00000463727 TRIM35Q9UPQ4 493 aa12.87□□□□□ -0.35
PTPRE-205ENST00000463727 REC8O95072 547 aa12.87□□□□□ -0.35
PTPRE-205ENST00000463727 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.87□□□□□ -0.35
PTPRE-205ENST00000463727 CIZ1Q9ULV3 898 aaPredicted RBP12.87□□□□□ -0.35
PTPRE-205ENST00000463727 EMILIN1Q9Y6C2 1016 aa12.87□□□□□ -0.35
PTPRE-205ENST00000463727 RRS1Q15050 365 aaKnown RBP12.86□□□□□ -0.35
PTPRE-205ENST00000463727 FAM69CQ0P6D2 419 aa12.86□□□□□ -0.35
PTPRE-205ENST00000463727 BMP2KLQ5H9B9 411 aa12.86□□□□□ -0.35
PTPRE-205ENST00000463727 IFT57Q9NWB7 429 aa12.86□□□□□ -0.35
PTPRE-205ENST00000463727 CFAP65Q6ZU64 1925 aaKnown RBP12.86□□□□□ -0.35
PTPRE-205ENST00000463727 TRIM6-TRIM34B2RNG4 842 aa12.86□□□□□ -0.35
PTPRE-205ENST00000463727 K7ELQ4 463 aaPredicted RBP12.86□□□□□ -0.35
PTPRE-205ENST00000463727 PTMAP06454 111 aaKnown RBP12.85□□□□□ -0.35
PTPRE-205ENST00000463727 AMPHP49418 695 aa12.85□□□□□ -0.35
PTPRE-205ENST00000463727 SULT6B1Q6IMI4 303 aa12.85□□□□□ -0.35
PTPRE-205ENST00000463727 KIDINS220Q9ULH0 1771 aa12.85□□□□□ -0.35
PTPRE-205ENST00000463727 SPHKAPQ2M3C7 1700 aa12.85□□□□□ -0.35
PTPRE-205ENST00000463727 NUCB2P80303 420 aa12.85□□□□□ -0.35
PTPRE-205ENST00000463727 TPRNQ4KMQ1 711 aa12.84□□□□□ -0.35
PTPRE-205ENST00000463727 NME9Q86XW9 330 aa12.84□□□□□ -0.35
PTPRE-205ENST00000463727 NGDNQ8NEJ9 315 aaKnown RBP12.84□□□□□ -0.35
PTPRE-205ENST00000463727 DEPDC5O75140 1603 aa12.84□□□□□ -0.35
PTPRE-205ENST00000463727 MAP3K4Q9Y6R4 1608 aa12.84□□□□□ -0.35
PTPRE-205ENST00000463727 PLEKHG5O94827 1062 aa12.84□□□□□ -0.35
PTPRE-205ENST00000463727 CCDC61Q9Y6R9 512 aa12.84□□□□□ -0.35
PTPRE-205ENST00000463727 USP19O94966 1318 aa12.84□□□□□ -0.35
PTPRE-205ENST00000463727 DCTN1Q14203 1278 aa12.83□□□□□ -0.35
PTPRE-205ENST00000463727 RABEP1Q15276 862 aa12.83□□□□□ -0.35
PTPRE-205ENST00000463727 GRPEL1Q9HAV7 217 aa12.83□□□□□ -0.35
PTPRE-205ENST00000463727 ISY1Q9ULR0 285 aaKnown RBP12.83□□□□□ -0.35
PTPRE-205ENST00000463727 POGZQ7Z3K3 1410 aa12.83□□□□□ -0.36
PTPRE-205ENST00000463727 POLKQ9UBT6 870 aa12.83□□□□□ -0.36
PTPRE-205ENST00000463727 ARHGAP45Q92619 1136 aa12.83□□□□□ -0.36
PTPRE-205ENST00000463727 PHF23Q9BUL5 403 aaPredicted RBP12.83□□□□□ -0.36
PTPRE-205ENST00000463727 OS9Q13438 667 aaPredicted RBP12.82□□□□□ -0.36
PTPRE-205ENST00000463727 NUDT16Q96DE0 195 aaKnown RBP12.82□□□□□ -0.36
PTPRE-205ENST00000463727 ZNF692Q9BU19 519 aaPredicted RBP12.82□□□□□ -0.36
PTPRE-205ENST00000463727 ZMYM3Q14202 1370 aa12.82□□□□□ -0.36
PTPRE-205ENST00000463727 FOXD4L5Q5VV16 416 aaPredicted RBP12.82□□□□□ -0.36
PTPRE-205ENST00000463727 FOXD4L4Q8WXT5 416 aaPredicted RBP12.82□□□□□ -0.36
PTPRE-205ENST00000463727 MBIPQ9NS73 344 aa12.82□□□□□ -0.36
PTPRE-205ENST00000463727 TSPYL4Q9UJ04 414 aa12.82□□□□□ -0.36
PTPRE-205ENST00000463727 CFAP74Q9C0B2 1584 aa12.82□□□□□ -0.36
PTPRE-205ENST00000463727 MCTP1Q6DN14 999 aa12.82□□□□□ -0.36
PTPRE-205ENST00000463727 NOL8Q76FK4 1167 aaKnown RBP12.82□□□□□ -0.36
PTPRE-205ENST00000463727 RILPL2Q969X0 211 aa12.82□□□□□ -0.36
PTPRE-205ENST00000463727 KIF1BO60333 1816 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms