RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 NUTM2BA6NNL0 878 aaPredicted RBP27.47■■□□□ 1.99
COL9A3-204ENST00000463487 NUTM2EB1AL46 878 aaPredicted RBP27.47■■□□□ 1.99
COL9A3-204ENST00000463487 HAP1P54257 671 aaPredicted RBP27.47■■□□□ 1.99
COL9A3-204ENST00000463487 MEX3CQ5U5Q3 659 aaKnown RBP27.47■■□□□ 1.99
COL9A3-204ENST00000463487 NUTM2AQ8IVF1 878 aaPredicted RBP27.47■■□□□ 1.99
COL9A3-204ENST00000463487 POLR3GLQ9BT43 218 aa27.47■■□□□ 1.99
COL9A3-204ENST00000463487 ALS2Q96Q42 1657 aa27.46■■□□□ 1.99
COL9A3-204ENST00000463487 MED1Q15648 1581 aaPredicted RBP27.46■■□□□ 1.99
COL9A3-204ENST00000463487 ANKRD36BQ8N2N9 1353 aa27.45■■□□□ 1.98
COL9A3-204ENST00000463487 TTC21AQ8NDW8 1320 aa27.44■■□□□ 1.98
COL9A3-204ENST00000463487 ABTB2Q8N961 1025 aa27.44■■□□□ 1.98
COL9A3-204ENST00000463487 MON2Q7Z3U7 1717 aa27.44■■□□□ 1.98
COL9A3-204ENST00000463487 A0A1W2PP64 1363 aa27.43■■□□□ 1.98
COL9A3-204ENST00000463487 CD163L1Q9NR16 1453 aa27.42■■□□□ 1.98
COL9A3-204ENST00000463487 EDC4Q6P2E9 1401 aaKnown RBP27.41■■□□□ 1.98
COL9A3-204ENST00000463487 NLRP13Q86W25 1043 aa27.4■■□□□ 1.98
COL9A3-204ENST00000463487 PHF23Q9BUL5 403 aaPredicted RBP27.4■■□□□ 1.98
COL9A3-204ENST00000463487 SSH2Q76I76 1423 aa27.4■■□□□ 1.98
COL9A3-204ENST00000463487 TTC21BQ7Z4L5 1316 aa27.4■■□□□ 1.98
COL9A3-204ENST00000463487 MYOM1P52179 1685 aa27.39■■□□□ 1.97
COL9A3-204ENST00000463487 NRKQ7Z2Y5 1582 aa27.39■■□□□ 1.97
COL9A3-204ENST00000463487 LRP6O75581 1613 aa27.38■■□□□ 1.97
COL9A3-204ENST00000463487 PLEKHG5O94827 1062 aa27.36■■□□□ 1.97
COL9A3-204ENST00000463487 ADAMTS2O95450 1211 aa27.35■■□□□ 1.97
COL9A3-204ENST00000463487 NLRP6P59044 892 aa27.35■■□□□ 1.97
COL9A3-204ENST00000463487 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.35■■□□□ 1.97
COL9A3-204ENST00000463487 NUTM2GQ5VZR2 741 aa27.34■■□□□ 1.97
COL9A3-204ENST00000463487 KIF7Q2M1P5 1343 aa27.34■■□□□ 1.97
COL9A3-204ENST00000463487 ABCA3Q99758 1704 aa27.33■■□□□ 1.97
COL9A3-204ENST00000463487 CABLES1Q8TDN4 633 aa27.33■■□□□ 1.97
COL9A3-204ENST00000463487 C11orf95C9JLR9 678 aaPredicted RBP27.32■■□□□ 1.96
COL9A3-204ENST00000463487 PIK3C2AO00443 1686 aa27.32■■□□□ 1.96
COL9A3-204ENST00000463487 C8orf37Q96NL8 207 aa27.31■■□□□ 1.96
COL9A3-204ENST00000463487 USP19O94966 1318 aa27.3■■□□□ 1.96
COL9A3-204ENST00000463487 NGLY1Q96IV0 654 aa27.29■■□□□ 1.96
COL9A3-204ENST00000463487 PHRF1Q9P1Y6 1649 aaKnown RBP27.29■■□□□ 1.96
COL9A3-204ENST00000463487 MARF1Q9Y4F3 1742 aaKnown RBP27.29■■□□□ 1.96
COL9A3-204ENST00000463487 CRYBG1Q9Y4K1 1723 aa27.28■■□□□ 1.96
COL9A3-204ENST00000463487 CCDC7Q96M83 1385 aa27.28■■□□□ 1.96
COL9A3-204ENST00000463487 KCNH5Q8NCM2 988 aa27.27■■□□□ 1.96
COL9A3-204ENST00000463487 USP31Q70CQ4 1352 aa27.26■■□□□ 1.95
COL9A3-204ENST00000463487 NSD3Q9BZ95 1437 aa27.25■■□□□ 1.95
COL9A3-204ENST00000463487 ZNF772Q68DY9 489 aaPredicted RBP27.25■■□□□ 1.95
COL9A3-204ENST00000463487 NME9Q86XW9 330 aa27.25■■□□□ 1.95
COL9A3-204ENST00000463487 GCP02774 474 aa27.24■■□□□ 1.95
COL9A3-204ENST00000463487 SLIT3O75094 1523 aa27.24■■□□□ 1.95
COL9A3-204ENST00000463487 WASHC2AQ641Q2 1341 aa27.23■■□□□ 1.95
COL9A3-204ENST00000463487 COG3Q96JB2 828 aa27.23■■□□□ 1.95
COL9A3-204ENST00000463487 PANK3Q9H999 370 aa27.23■■□□□ 1.95
COL9A3-204ENST00000463487 AFF2P51816 1311 aa27.22■■□□□ 1.95
COL9A3-204ENST00000463487 CGNL1Q0VF96 1302 aa27.22■■□□□ 1.95
COL9A3-204ENST00000463487 USP54Q70EL1 1684 aa27.22■■□□□ 1.95
COL9A3-204ENST00000463487 PRDM11Q9NQV5 511 aa27.22■■□□□ 1.95
COL9A3-204ENST00000463487 CARD14Q9BXL6 1004 aa27.21■■□□□ 1.95
COL9A3-204ENST00000463487 OVOS2A0A0J9YW53 1432 aa27.19■■□□□ 1.94
COL9A3-204ENST00000463487 OVOS2Q6IE36 1432 aa27.19■■□□□ 1.94
COL9A3-204ENST00000463487 KIF20BQ96Q89 1820 aa27.19■■□□□ 1.94
COL9A3-204ENST00000463487 ZC3H6P61129 1189 aaKnown RBP27.19■■□□□ 1.94
COL9A3-204ENST00000463487 FNBP4Q8N3X1 1017 aaPredicted RBP27.19■■□□□ 1.94
COL9A3-204ENST00000463487 COL14A1Q05707 1796 aaKnown RBP27.19■■□□□ 1.94
COL9A3-204ENST00000463487 CPDO75976 1380 aa27.19■■□□□ 1.94
COL9A3-204ENST00000463487 KIAA0232Q92628 1395 aa27.19■■□□□ 1.94
COL9A3-204ENST00000463487 USP21Q9UK80 565 aa27.18■■□□□ 1.94
COL9A3-204ENST00000463487 KNSTRNQ9Y448 316 aa27.18■■□□□ 1.94
COL9A3-204ENST00000463487 FYB1O15117 783 aa27.17■■□□□ 1.94
COL9A3-204ENST00000463487 FAM83GA6ND36 823 aa27.15■■□□□ 1.94
COL9A3-204ENST00000463487 SOX12O15370 315 aa27.15■■□□□ 1.94
COL9A3-204ENST00000463487 ZRANB1Q9UGI0 708 aa27.15■■□□□ 1.94
COL9A3-204ENST00000463487 NWD2Q9ULI1 1742 aa27.14■■□□□ 1.94
COL9A3-204ENST00000463487 GGNBP2Q9H3C7 697 aa27.14■■□□□ 1.94
COL9A3-204ENST00000463487 SLIT2O94813 1529 aa27.14■■□□□ 1.94
COL9A3-204ENST00000463487 PLCH1Q4KWH8 1693 aa27.14■■□□□ 1.93
COL9A3-204ENST00000463487 NSD2O96028 1365 aa27.13■■□□□ 1.93
COL9A3-204ENST00000463487 ZBTB7CA1YPR0 619 aa27.12■■□□□ 1.93
COL9A3-204ENST00000463487 UNC5CLQ8IV45 518 aa27.11■■□□□ 1.93
COL9A3-204ENST00000463487 RGS17Q9UGC6 210 aaPredicted RBP27.11■■□□□ 1.93
COL9A3-204ENST00000463487 TRPC5Q9UL62 973 aaPredicted RBP27.11■■□□□ 1.93
COL9A3-204ENST00000463487 NFAT5O94916 1531 aa27.11■■□□□ 1.93
COL9A3-204ENST00000463487 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.1■■□□□ 1.93
COL9A3-204ENST00000463487 CHRNA2Q15822 529 aa27.1■■□□□ 1.93
COL9A3-204ENST00000463487 BTG4Q9NY30 223 aa27.1■■□□□ 1.93
COL9A3-204ENST00000463487 ARHGEF25Q86VW2 580 aa27.09■■□□□ 1.93
COL9A3-204ENST00000463487 BCL9LQ86UU0 1499 aa27.08■■□□□ 1.93
COL9A3-204ENST00000463487 AATKQ6ZMQ8 1374 aa27.08■■□□□ 1.93
COL9A3-204ENST00000463487 QTRT2Q9H974 415 aaKnown RBP27.07■■□□□ 1.92
COL9A3-204ENST00000463487 ABCC6O95255 1503 aa27.06■■□□□ 1.92
COL9A3-204ENST00000463487 ANKRD26Q9UPS8 1709 aa27.05■■□□□ 1.92
COL9A3-204ENST00000463487 EVA1CP58658 441 aa27.05■■□□□ 1.92
COL9A3-204ENST00000463487 ATRNO75882 1429 aa27.03■■□□□ 1.92
COL9A3-204ENST00000463487 RXRBP28702 533 aa27.03■■□□□ 1.92
COL9A3-204ENST00000463487 POTEAQ6S8J7 498 aa27.03■■□□□ 1.92
COL9A3-204ENST00000463487 LMO7Q8WWI1 1683 aa27.03■■□□□ 1.92
COL9A3-204ENST00000463487 CCDC9Q9Y3X0 531 aaKnown RBP27.03■■□□□ 1.92
COL9A3-204ENST00000463487 LTN1O94822 1766 aa27.02■■□□□ 1.92
COL9A3-204ENST00000463487 VPS72Q15906 364 aa27.02■■□□□ 1.92
COL9A3-204ENST00000463487 NRAPQ86VF7 1730 aa27.02■■□□□ 1.92
COL9A3-204ENST00000463487 RBM6P78332 1123 aaKnown RBP27.01■■□□□ 1.91
COL9A3-204ENST00000463487 STRN4Q9NRL3 753 aa27.01■■□□□ 1.91
COL9A3-204ENST00000463487 PER1O15534 1290 aaPredicted RBP27■■□□□ 1.91
COL9A3-204ENST00000463487 MORC1Q86VD1 984 aa27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms