RNA–Protein interactions for RNA: ENST00000462597.1

PDLIM4-204, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 767 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-204ENST00000462597 UNC5CLQ8IV45 518 aa26.48■■□□□ 1.83
PDLIM4-204ENST00000462597 RALGAPBQ86X10 1494 aa26.48■■□□□ 1.83
PDLIM4-204ENST00000462597 GJD4Q96KN9 370 aaPredicted RBP26.47■■□□□ 1.83
PDLIM4-204ENST00000462597 PAK3O75914 559 aaPredicted RBP26.45■■□□□ 1.82
PDLIM4-204ENST00000462597 ATAD2Q6PL18 1390 aa26.44■■□□□ 1.82
PDLIM4-204ENST00000462597 CENPJQ9HC77 1338 aaPredicted RBP26.43■■□□□ 1.82
PDLIM4-204ENST00000462597 NRAPQ86VF7 1730 aa26.43■■□□□ 1.82
PDLIM4-204ENST00000462597 EP400Q96L91 3159 aa26.41■■□□□ 1.82
PDLIM4-204ENST00000462597 FAM83GA6ND36 823 aa26.41■■□□□ 1.82
PDLIM4-204ENST00000462597 BRWD3Q6RI45 1802 aa26.41■■□□□ 1.82
PDLIM4-204ENST00000462597 COL14A1Q05707 1796 aaKnown RBP26.41■■□□□ 1.82
PDLIM4-204ENST00000462597 PHRF1Q9P1Y6 1649 aaKnown RBP26.4■■□□□ 1.82
PDLIM4-204ENST00000462597 POLR3AO14802 1390 aaPredicted RBP26.39■■□□□ 1.82
PDLIM4-204ENST00000462597 ACEP12821 1306 aa26.39■■□□□ 1.81
PDLIM4-204ENST00000462597 CCDC61Q9Y6R9 512 aa26.38■■□□□ 1.81
PDLIM4-204ENST00000462597 SRPK2P78362 688 aaKnown RBP26.37■■□□□ 1.81
PDLIM4-204ENST00000462597 VPS72Q15906 364 aa26.37■■□□□ 1.81
PDLIM4-204ENST00000462597 CABP2Q9NPB3 220 aa26.36■■□□□ 1.81
PDLIM4-204ENST00000462597 TIMELESSQ9UNS1 1208 aa26.36■■□□□ 1.81
PDLIM4-204ENST00000462597 CCDC9Q9Y3X0 531 aaKnown RBP26.36■■□□□ 1.81
PDLIM4-204ENST00000462597 NUTM2GQ5VZR2 741 aa26.35■■□□□ 1.81
PDLIM4-204ENST00000462597 PPIP5K1Q6PFW1 1433 aa26.35■■□□□ 1.81
PDLIM4-204ENST00000462597 ROCK2O75116 1388 aaKnown RBP26.34■■□□□ 1.81
PDLIM4-204ENST00000462597 NBPF8Q3BBV2 869 aa26.34■■□□□ 1.81
PDLIM4-204ENST00000462597 PLEKHG3A1L390 1219 aa26.33■■□□□ 1.81
PDLIM4-204ENST00000462597 BTG4Q9NY30 223 aa26.33■■□□□ 1.81
PDLIM4-204ENST00000462597 SEPT12Q8IYM1 358 aa26.3■■□□□ 1.8
PDLIM4-204ENST00000462597 NRKQ7Z2Y5 1582 aa26.29■■□□□ 1.8
PDLIM4-204ENST00000462597 KIAA0232Q92628 1395 aa26.29■■□□□ 1.8
PDLIM4-204ENST00000462597 PRDM11Q9NQV5 511 aa26.28■■□□□ 1.8
PDLIM4-204ENST00000462597 CHRNA2Q15822 529 aa26.26■■□□□ 1.79
PDLIM4-204ENST00000462597 ZC3H6P61129 1189 aaKnown RBP26.25■■□□□ 1.79
PDLIM4-204ENST00000462597 FAM98CQ17RN3 349 aaKnown RBP26.24■■□□□ 1.79
PDLIM4-204ENST00000462597 ABTB2Q8N961 1025 aa26.24■■□□□ 1.79
PDLIM4-204ENST00000462597 CABP1Q9NZU7 370 aa26.24■■□□□ 1.79
PDLIM4-204ENST00000462597 EVC2Q86UK5 1308 aa26.23■■□□□ 1.79
PDLIM4-204ENST00000462597 A0A0G2JS52 829 aa26.23■■□□□ 1.79
PDLIM4-204ENST00000462597 ONECUT3O60422 494 aaPredicted RBP26.23■■□□□ 1.79
PDLIM4-204ENST00000462597 MYT1Q01538 1121 aa26.23■■□□□ 1.79
PDLIM4-204ENST00000462597 USP6P35125 1406 aa26.22■■□□□ 1.79
PDLIM4-204ENST00000462597 USP19O94966 1318 aa26.2■■□□□ 1.79
PDLIM4-204ENST00000462597 SPATA31A5Q5VU36 1347 aa26.2■■□□□ 1.79
PDLIM4-204ENST00000462597 SPATA31A7Q8IWB4 1347 aa26.2■■□□□ 1.79
PDLIM4-204ENST00000462597 PIK3C2AO00443 1686 aa26.19■■□□□ 1.78
PDLIM4-204ENST00000462597 THSD7AQ9UPZ6 1657 aa26.19■■□□□ 1.78
PDLIM4-204ENST00000462597 AKAP12Q02952 1782 aa26.18■■□□□ 1.78
PDLIM4-204ENST00000462597 KRT27Q7Z3Y8 459 aa26.18■■□□□ 1.78
PDLIM4-204ENST00000462597 LMO7Q8WWI1 1683 aa26.18■■□□□ 1.78
PDLIM4-204ENST00000462597 BLMP54132 1417 aaPredicted RBP26.17■■□□□ 1.78
PDLIM4-204ENST00000462597 STRN4Q9NRL3 753 aa26.17■■□□□ 1.78
PDLIM4-204ENST00000462597 CCDC125Q86Z20 511 aa26.16■■□□□ 1.78
PDLIM4-204ENST00000462597 CAMTA1Q9Y6Y1 1673 aa26.15■■□□□ 1.78
PDLIM4-204ENST00000462597 CARD11Q9BXL7 1154 aa26.15■■□□□ 1.78
PDLIM4-204ENST00000462597 SSH2Q76I76 1423 aa26.14■■□□□ 1.78
PDLIM4-204ENST00000462597 NLRP13Q86W25 1043 aa26.14■■□□□ 1.78
PDLIM4-204ENST00000462597 BRD4O60885 1362 aaPredicted RBP26.14■■□□□ 1.78
PDLIM4-204ENST00000462597 CPDO75976 1380 aa26.13■■□□□ 1.77
PDLIM4-204ENST00000462597 SLIT3O75094 1523 aa26.13■■□□□ 1.77
PDLIM4-204ENST00000462597 SPATA31A1Q5TZJ5 1347 aa26.13■■□□□ 1.77
PDLIM4-204ENST00000462597 GCP02774 474 aa26.12■■□□□ 1.77
PDLIM4-204ENST00000462597 NLRP6P59044 892 aa26.1■■□□□ 1.77
PDLIM4-204ENST00000462597 FAM182BQ5T319 152 aa26.1■■□□□ 1.77
PDLIM4-204ENST00000462597 SBNO2Q9Y2G9 1366 aa26.09■■□□□ 1.77
PDLIM4-204ENST00000462597 ZBTB7CA1YPR0 619 aa26.09■■□□□ 1.77
PDLIM4-204ENST00000462597 DEFB132Q7Z7B7 95 aa26.09■■□□□ 1.77
PDLIM4-204ENST00000462597 MON2Q7Z3U7 1717 aa26.08■■□□□ 1.77
PDLIM4-204ENST00000462597 USP35Q9P2H5 1018 aa26.08■■□□□ 1.77
PDLIM4-204ENST00000462597 EVA1CP58658 441 aa26.07■■□□□ 1.76
PDLIM4-204ENST00000462597 LARP1Q6PKG0 1096 aaKnown RBP26.07■■□□□ 1.76
PDLIM4-204ENST00000462597 CPSF1Q10570 1443 aaKnown RBP26.06■■□□□ 1.76
PDLIM4-204ENST00000462597 COL5A2P05997 1499 aaPredicted RBP26.06■■□□□ 1.76
PDLIM4-204ENST00000462597 TTC21BQ7Z4L5 1316 aa26.06■■□□□ 1.76
PDLIM4-204ENST00000462597 SF3B2Q13435 895 aaKnown RBP26.05■■□□□ 1.76
PDLIM4-204ENST00000462597 RGPD1P0DJD0 1748 aa26.04■■□□□ 1.76
PDLIM4-204ENST00000462597 KTN1Q86UP2 1357 aaKnown RBP26.04■■□□□ 1.76
PDLIM4-204ENST00000462597 COL18A1P39060 1754 aa26.03■■□□□ 1.76
PDLIM4-204ENST00000462597 ZRANB1Q9UGI0 708 aa26.03■■□□□ 1.76
PDLIM4-204ENST00000462597 ZNF692Q9BU19 519 aaPredicted RBP26.02■■□□□ 1.76
PDLIM4-204ENST00000462597 TNS1Q9HBL0 1735 aaKnown RBP26.02■■□□□ 1.76
PDLIM4-204ENST00000462597 USP47Q96K76 1375 aa26.01■■□□□ 1.75
PDLIM4-204ENST00000462597 CD163L1Q9NR16 1453 aa26.01■■□□□ 1.75
PDLIM4-204ENST00000462597 SOX12O15370 315 aa26■■□□□ 1.75
PDLIM4-204ENST00000462597 RGPD5Q99666 1765 aa26■■□□□ 1.75
PDLIM4-204ENST00000462597 AATKQ6ZMQ8 1374 aa25.99■■□□□ 1.75
PDLIM4-204ENST00000462597 TTC21AQ8NDW8 1320 aa25.99■■□□□ 1.75
PDLIM4-204ENST00000462597 BARGINQ6ZT62 677 aa25.98■■□□□ 1.75
PDLIM4-204ENST00000462597 NFAT5O94916 1531 aa25.98■■□□□ 1.75
PDLIM4-204ENST00000462597 SRCAPQ6ZRS2 3230 aa25.97■■□□□ 1.75
PDLIM4-204ENST00000462597 TCP11L2Q8N4U5 519 aa25.97■■□□□ 1.75
PDLIM4-204ENST00000462597 TMC1Q8TDI8 760 aa25.97■■□□□ 1.75
PDLIM4-204ENST00000462597 PARP4Q9UKK3 1724 aaKnown RBP25.96■■□□□ 1.75
PDLIM4-204ENST00000462597 CRB1P82279 1406 aa25.96■■□□□ 1.75
PDLIM4-204ENST00000462597 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.95■■□□□ 1.74
PDLIM4-204ENST00000462597 USP54Q70EL1 1684 aa25.94■■□□□ 1.74
PDLIM4-204ENST00000462597 WNK3Q9BYP7 1800 aa25.94■■□□□ 1.74
PDLIM4-204ENST00000462597 SLC12A5Q9H2X9 1139 aa25.94■■□□□ 1.74
PDLIM4-204ENST00000462597 AXIN2Q9Y2T1 843 aa25.94■■□□□ 1.74
PDLIM4-204ENST00000462597 ST20-MTHFSA0A0A6YYL1 179 aa25.93■■□□□ 1.74
PDLIM4-204ENST00000462597 BAG6P46379 1132 aa25.93■■□□□ 1.74
PDLIM4-204ENST00000462597 ARHGEF25Q86VW2 580 aa25.92■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms