RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 CDCA8Q53HL2 280 aa31.93■■■□□ 2.7
CCDC28B-203ENST00000461819 MARF1Q9Y4F3 1742 aaKnown RBP31.92■■■□□ 2.7
CCDC28B-203ENST00000461819 PLEKHG5O94827 1062 aa31.91■■■□□ 2.7
CCDC28B-203ENST00000461819 NINLQ9Y2I6 1382 aa31.9■■■□□ 2.7
CCDC28B-203ENST00000461819 BRD4O60885 1362 aaPredicted RBP31.89■■■□□ 2.7
CCDC28B-203ENST00000461819 NRKQ7Z2Y5 1582 aa31.89■■■□□ 2.7
CCDC28B-203ENST00000461819 ZNF692Q9BU19 519 aaPredicted RBP31.88■■■□□ 2.69
CCDC28B-203ENST00000461819 CPSF1Q10570 1443 aaKnown RBP31.88■■■□□ 2.69
CCDC28B-203ENST00000461819 KTN1Q86UP2 1357 aaKnown RBP31.87■■■□□ 2.69
CCDC28B-203ENST00000461819 ADAMTS2O95450 1211 aa31.87■■■□□ 2.69
CCDC28B-203ENST00000461819 HAP1P54257 671 aaPredicted RBP31.87■■■□□ 2.69
CCDC28B-203ENST00000461819 SLC12A5Q9H2X9 1139 aa31.87■■■□□ 2.69
CCDC28B-203ENST00000461819 CRYBG1Q9Y4K1 1723 aa31.86■■■□□ 2.69
CCDC28B-203ENST00000461819 HDGFL2Q7Z4V5 671 aaPredicted RBP31.86■■■□□ 2.69
CCDC28B-203ENST00000461819 CD163L1Q9NR16 1453 aa31.85■■■□□ 2.69
CCDC28B-203ENST00000461819 MYOM1P52179 1685 aa31.85■■■□□ 2.69
CCDC28B-203ENST00000461819 CABLES1Q8TDN4 633 aa31.84■■■□□ 2.69
CCDC28B-203ENST00000461819 TERF2IPQ9NYB0 399 aa31.84■■■□□ 2.69
CCDC28B-203ENST00000461819 ABTB2Q8N961 1025 aa31.83■■■□□ 2.69
CCDC28B-203ENST00000461819 PHRF1Q9P1Y6 1649 aaKnown RBP31.82■■■□□ 2.69
CCDC28B-203ENST00000461819 PIK3C2AO00443 1686 aa31.82■■■□□ 2.68
CCDC28B-203ENST00000461819 A0A1W2PP64 1363 aa31.81■■■□□ 2.68
CCDC28B-203ENST00000461819 NUTM2GQ5VZR2 741 aa31.81■■■□□ 2.68
CCDC28B-203ENST00000461819 C8orf37Q96NL8 207 aa31.81■■■□□ 2.68
CCDC28B-203ENST00000461819 SSH2Q76I76 1423 aa31.81■■■□□ 2.68
CCDC28B-203ENST00000461819 POLR3GLQ9BT43 218 aa31.8■■■□□ 2.68
CCDC28B-203ENST00000461819 TTC21BQ7Z4L5 1316 aa31.77■■■□□ 2.68
CCDC28B-203ENST00000461819 TTC21AQ8NDW8 1320 aa31.76■■■□□ 2.68
CCDC28B-203ENST00000461819 EDC4Q6P2E9 1401 aaKnown RBP31.75■■■□□ 2.67
CCDC28B-203ENST00000461819 NGLY1Q96IV0 654 aa31.75■■■□□ 2.67
CCDC28B-203ENST00000461819 ANKRD36BQ8N2N9 1353 aa31.75■■■□□ 2.67
CCDC28B-203ENST00000461819 NLRP13Q86W25 1043 aa31.74■■■□□ 2.67
CCDC28B-203ENST00000461819 AFF2P51816 1311 aa31.74■■■□□ 2.67
CCDC28B-203ENST00000461819 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.73■■■□□ 2.67
CCDC28B-203ENST00000461819 NLRP6P59044 892 aa31.72■■■□□ 2.67
CCDC28B-203ENST00000461819 PLCH1Q4KWH8 1693 aa31.71■■■□□ 2.67
CCDC28B-203ENST00000461819 RGS17Q9UGC6 210 aaPredicted RBP31.7■■■□□ 2.67
CCDC28B-203ENST00000461819 USP19O94966 1318 aa31.69■■■□□ 2.66
CCDC28B-203ENST00000461819 ZNF772Q68DY9 489 aaPredicted RBP31.68■■■□□ 2.66
CCDC28B-203ENST00000461819 USP54Q70EL1 1684 aa31.67■■■□□ 2.66
CCDC28B-203ENST00000461819 COL14A1Q05707 1796 aaKnown RBP31.67■■■□□ 2.66
CCDC28B-203ENST00000461819 SLIT3O75094 1523 aa31.66■■■□□ 2.66
CCDC28B-203ENST00000461819 C11orf95C9JLR9 678 aaPredicted RBP31.65■■■□□ 2.66
CCDC28B-203ENST00000461819 NWD2Q9ULI1 1742 aa31.65■■■□□ 2.66
CCDC28B-203ENST00000461819 KIF20BQ96Q89 1820 aa31.65■■■□□ 2.66
CCDC28B-203ENST00000461819 ZEB1P37275 1124 aaPredicted RBP31.64■■■□□ 2.66
CCDC28B-203ENST00000461819 NME9Q86XW9 330 aa31.64■■■□□ 2.66
CCDC28B-203ENST00000461819 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.63■■■□□ 2.65
CCDC28B-203ENST00000461819 USP21Q9UK80 565 aa31.63■■■□□ 2.65
CCDC28B-203ENST00000461819 FNBP4Q8N3X1 1017 aaPredicted RBP31.62■■■□□ 2.65
CCDC28B-203ENST00000461819 KIAA0232Q92628 1395 aa31.61■■■□□ 2.65
CCDC28B-203ENST00000461819 KIF7Q2M1P5 1343 aa31.61■■■□□ 2.65
CCDC28B-203ENST00000461819 PRDM11Q9NQV5 511 aa31.61■■■□□ 2.65
CCDC28B-203ENST00000461819 SLIT2O94813 1529 aa31.6■■■□□ 2.65
CCDC28B-203ENST00000461819 GCP02774 474 aa31.6■■■□□ 2.65
CCDC28B-203ENST00000461819 ZC3H6P61129 1189 aaKnown RBP31.6■■■□□ 2.65
CCDC28B-203ENST00000461819 POTEAQ6S8J7 498 aa31.6■■■□□ 2.65
CCDC28B-203ENST00000461819 USP31Q70CQ4 1352 aa31.59■■■□□ 2.65
CCDC28B-203ENST00000461819 FAM83GA6ND36 823 aa31.59■■■□□ 2.65
CCDC28B-203ENST00000461819 ZRANB1Q9UGI0 708 aa31.59■■■□□ 2.65
CCDC28B-203ENST00000461819 NSD3Q9BZ95 1437 aa31.58■■■□□ 2.65
CCDC28B-203ENST00000461819 BCL9LQ86UU0 1499 aa31.57■■■□□ 2.64
CCDC28B-203ENST00000461819 NRAPQ86VF7 1730 aa31.56■■■□□ 2.64
CCDC28B-203ENST00000461819 SOX12O15370 315 aa31.56■■■□□ 2.64
CCDC28B-203ENST00000461819 KCNH5Q8NCM2 988 aa31.56■■■□□ 2.64
CCDC28B-203ENST00000461819 OVOS2A0A0J9YW53 1432 aa31.55■■■□□ 2.64
CCDC28B-203ENST00000461819 OVOS2Q6IE36 1432 aa31.55■■■□□ 2.64
CCDC28B-203ENST00000461819 CPDO75976 1380 aa31.55■■■□□ 2.64
CCDC28B-203ENST00000461819 NFAT5O94916 1531 aa31.54■■■□□ 2.64
CCDC28B-203ENST00000461819 ZBTB7CA1YPR0 619 aa31.53■■■□□ 2.64
CCDC28B-203ENST00000461819 CHRNA2Q15822 529 aa31.53■■■□□ 2.64
CCDC28B-203ENST00000461819 CARD14Q9BXL6 1004 aa31.53■■■□□ 2.64
CCDC28B-203ENST00000461819 QTRT2Q9H974 415 aaKnown RBP31.53■■■□□ 2.64
CCDC28B-203ENST00000461819 UNC5CLQ8IV45 518 aa31.52■■■□□ 2.64
CCDC28B-203ENST00000461819 BTG4Q9NY30 223 aa31.52■■■□□ 2.64
CCDC28B-203ENST00000461819 TRPC5Q9UL62 973 aaPredicted RBP31.52■■■□□ 2.64
CCDC28B-203ENST00000461819 CCDC7Q96M83 1385 aa31.52■■■□□ 2.64
CCDC28B-203ENST00000461819 LTN1O94822 1766 aa31.51■■■□□ 2.64
CCDC28B-203ENST00000461819 COG3Q96JB2 828 aa31.51■■■□□ 2.63
CCDC28B-203ENST00000461819 ATRNO75882 1429 aa31.5■■■□□ 2.63
CCDC28B-203ENST00000461819 PANK3Q9H999 370 aa31.5■■■□□ 2.63
CCDC28B-203ENST00000461819 LMO7Q8WWI1 1683 aa31.5■■■□□ 2.63
CCDC28B-203ENST00000461819 ILDR2Q71H61 639 aa31.49■■■□□ 2.63
CCDC28B-203ENST00000461819 WASHC2AQ641Q2 1341 aa31.49■■■□□ 2.63
CCDC28B-203ENST00000461819 FYB1O15117 783 aa31.47■■■□□ 2.63
CCDC28B-203ENST00000461819 GGNBP2Q9H3C7 697 aa31.47■■■□□ 2.63
CCDC28B-203ENST00000461819 RXRBP28702 533 aa31.46■■■□□ 2.63
CCDC28B-203ENST00000461819 CGNL1Q0VF96 1302 aa31.46■■■□□ 2.63
CCDC28B-203ENST00000461819 ANKRD26Q9UPS8 1709 aa31.45■■■□□ 2.63
CCDC28B-203ENST00000461819 COL18A1P39060 1754 aa31.45■■■□□ 2.62
CCDC28B-203ENST00000461819 RGPD5Q99666 1765 aa31.44■■■□□ 2.62
CCDC28B-203ENST00000461819 RBM6P78332 1123 aaKnown RBP31.43■■■□□ 2.62
CCDC28B-203ENST00000461819 CCDC9Q9Y3X0 531 aaKnown RBP31.43■■■□□ 2.62
CCDC28B-203ENST00000461819 CAMTA1Q9Y6Y1 1673 aa31.43■■■□□ 2.62
CCDC28B-203ENST00000461819 AATKQ6ZMQ8 1374 aa31.43■■■□□ 2.62
CCDC28B-203ENST00000461819 ARHGEF25Q86VW2 580 aa31.42■■■□□ 2.62
CCDC28B-203ENST00000461819 STRN4Q9NRL3 753 aa31.41■■■□□ 2.62
CCDC28B-203ENST00000461819 VPS72Q15906 364 aa31.4■■■□□ 2.62
CCDC28B-203ENST00000461819 ABCC6O95255 1503 aa31.39■■■□□ 2.62
CCDC28B-203ENST00000461819 GLI3P10071 1580 aa31.39■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms