RNA–Protein interactions for RNA: ENST00000461187.5

SMPD4-216, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 659 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-216ENST00000461187 PHRF1Q9P1Y6 1649 aaKnown RBP21.44■■□□□ 1.02
SMPD4-216ENST00000461187 NGDNQ8NEJ9 315 aaKnown RBP21.43■■□□□ 1.02
SMPD4-216ENST00000461187 NUDT16Q96DE0 195 aaKnown RBP21.42■■□□□ 1.02
SMPD4-216ENST00000461187 CCDC9Q9Y3X0 531 aaKnown RBP21.42■■□□□ 1.02
SMPD4-216ENST00000461187 BLMP54132 1417 aaPredicted RBP21.41■■□□□ 1.02
SMPD4-216ENST00000461187 PAK3O75914 559 aaPredicted RBP21.39■■□□□ 1.01
SMPD4-216ENST00000461187 BTG4Q9NY30 223 aa21.39■■□□□ 1.01
SMPD4-216ENST00000461187 ZRANB1Q9UGI0 708 aa21.39■■□□□ 1.01
SMPD4-216ENST00000461187 CDK19Q9BWU1 502 aa21.38■■□□□ 1.01
SMPD4-216ENST00000461187 QRICH2Q9H0J4 1663 aa21.37■■□□□ 1.01
SMPD4-216ENST00000461187 NBPF1Q3BBV0 1214 aa21.36■■□□□ 1.01
SMPD4-216ENST00000461187 KRT27Q7Z3Y8 459 aa21.36■■□□□ 1.01
SMPD4-216ENST00000461187 POLR3AO14802 1390 aaPredicted RBP21.36■■□□□ 1.01
SMPD4-216ENST00000461187 THSD7AQ9UPZ6 1657 aa21.35■■□□□ 1.01
SMPD4-216ENST00000461187 FAM98CQ17RN3 349 aaKnown RBP21.34■■□□□ 1.01
SMPD4-216ENST00000461187 RGPD1P0DJD0 1748 aa21.34■■□□□ 1.01
SMPD4-216ENST00000461187 DEFB132Q7Z7B7 95 aa21.33■■□□□ 1.01
SMPD4-216ENST00000461187 ACEP12821 1306 aa21.32■■□□□ 1
SMPD4-216ENST00000461187 SPATA31A5Q5VU36 1347 aa21.32■■□□□ 1
SMPD4-216ENST00000461187 SPATA31A7Q8IWB4 1347 aa21.32■■□□□ 1
SMPD4-216ENST00000461187 PRDM11Q9NQV5 511 aa21.32■■□□□ 1
SMPD4-216ENST00000461187 CCDC61Q9Y6R9 512 aa21.32■■□□□ 1
SMPD4-216ENST00000461187 A0A0G2JS52 829 aa21.31■■□□□ 1
SMPD4-216ENST00000461187 PLEKHG3A1L390 1219 aa21.31■■□□□ 1
SMPD4-216ENST00000461187 MYT1Q01538 1121 aa21.31■■□□□ 1
SMPD4-216ENST00000461187 NBPF8Q3BBV2 869 aa21.31■■□□□ 1
SMPD4-216ENST00000461187 KIAA0232Q92628 1395 aa21.31■■□□□ 1
SMPD4-216ENST00000461187 SF3B2Q13435 895 aaKnown RBP21.3■■□□□ 1
SMPD4-216ENST00000461187 NRKQ7Z2Y5 1582 aa21.3■■□□□ 1
SMPD4-216ENST00000461187 TRPM1Q7Z4N2 1603 aa21.29■■□□□ 1
SMPD4-216ENST00000461187 NUTM2GQ5VZR2 741 aa21.29■■□□□ 1
SMPD4-216ENST00000461187 TNS1Q9HBL0 1735 aaKnown RBP21.29■■□□□ 1
SMPD4-216ENST00000461187 CHRNA2Q15822 529 aa21.27■■□□□ 1
SMPD4-216ENST00000461187 LMO7Q8WWI1 1683 aa21.27■■□□□ 1
SMPD4-216ENST00000461187 CENPJQ9HC77 1338 aaPredicted RBP21.27■□□□□ 0.99
SMPD4-216ENST00000461187 ZC3H6P61129 1189 aaKnown RBP21.25■□□□□ 0.99
SMPD4-216ENST00000461187 PPIP5K1Q6PFW1 1433 aa21.25■□□□□ 0.99
SMPD4-216ENST00000461187 SPATA31A1Q5TZJ5 1347 aa21.25■□□□□ 0.99
SMPD4-216ENST00000461187 SRPK2P78362 688 aaKnown RBP21.24■□□□□ 0.99
SMPD4-216ENST00000461187 FAM182BQ5T319 152 aa21.23■□□□□ 0.99
SMPD4-216ENST00000461187 ABTB2Q8N961 1025 aa21.23■□□□□ 0.99
SMPD4-216ENST00000461187 L3MBTL2Q969R5 705 aa21.23■□□□□ 0.99
SMPD4-216ENST00000461187 CAMTA1Q9Y6Y1 1673 aa21.23■□□□□ 0.99
SMPD4-216ENST00000461187 CABP2Q9NPB3 220 aa21.22■□□□□ 0.99
SMPD4-216ENST00000461187 STRN4Q9NRL3 753 aa21.22■□□□□ 0.99
SMPD4-216ENST00000461187 AKAP12Q02952 1782 aa21.22■□□□□ 0.99
SMPD4-216ENST00000461187 USP19O94966 1318 aa21.22■□□□□ 0.99
SMPD4-216ENST00000461187 BAG6P46379 1132 aa21.21■□□□□ 0.99
SMPD4-216ENST00000461187 CPDO75976 1380 aa21.2■□□□□ 0.98
SMPD4-216ENST00000461187 SSH2Q76I76 1423 aa21.2■□□□□ 0.98
SMPD4-216ENST00000461187 LRP5O75197 1615 aa21.19■□□□□ 0.98
SMPD4-216ENST00000461187 SIN3AQ96ST3 1273 aa21.19■□□□□ 0.98
SMPD4-216ENST00000461187 PIK3C2AO00443 1686 aa21.18■□□□□ 0.98
SMPD4-216ENST00000461187 RGPD5Q99666 1765 aa21.18■□□□□ 0.98
SMPD4-216ENST00000461187 BRD4O60885 1362 aaPredicted RBP21.18■□□□□ 0.98
SMPD4-216ENST00000461187 NLRP13Q86W25 1043 aa21.17■□□□□ 0.98
SMPD4-216ENST00000461187 PARP4Q9UKK3 1724 aaKnown RBP21.17■□□□□ 0.98
SMPD4-216ENST00000461187 COL18A1P39060 1754 aa21.17■□□□□ 0.98
SMPD4-216ENST00000461187 DISP2A7MBM2 1401 aa21.16■□□□□ 0.98
SMPD4-216ENST00000461187 USP6P35125 1406 aa21.16■□□□□ 0.98
SMPD4-216ENST00000461187 GCP02774 474 aa21.16■□□□□ 0.98
SMPD4-216ENST00000461187 EVA1CP58658 441 aa21.16■□□□□ 0.98
SMPD4-216ENST00000461187 CABP1Q9NZU7 370 aa21.16■□□□□ 0.98
SMPD4-216ENST00000461187 EN1Q05925 392 aaPredicted RBP21.15■□□□□ 0.98
SMPD4-216ENST00000461187 BARGINQ6ZT62 677 aa21.15■□□□□ 0.98
SMPD4-216ENST00000461187 USP35Q9P2H5 1018 aa21.15■□□□□ 0.98
SMPD4-216ENST00000461187 SLIT3O75094 1523 aa21.14■□□□□ 0.98
SMPD4-216ENST00000461187 SBF2Q86WG5 1849 aa21.14■□□□□ 0.97
SMPD4-216ENST00000461187 WNK3Q9BYP7 1800 aa21.14■□□□□ 0.97
SMPD4-216ENST00000461187 LARP1Q6PKG0 1096 aaKnown RBP21.14■□□□□ 0.97
SMPD4-216ENST00000461187 COL5A2P05997 1499 aaPredicted RBP21.13■□□□□ 0.97
SMPD4-216ENST00000461187 EVC2Q86UK5 1308 aa21.12■□□□□ 0.97
SMPD4-216ENST00000461187 NEUROD1Q13562 356 aa21.12■□□□□ 0.97
SMPD4-216ENST00000461187 FAM196AQ6ZSG2 479 aa21.12■□□□□ 0.97
SMPD4-216ENST00000461187 RREB1Q92766 1687 aa21.12■□□□□ 0.97
SMPD4-216ENST00000461187 ROCK2O75116 1388 aaKnown RBP21.11■□□□□ 0.97
SMPD4-216ENST00000461187 PSDA5PKW4 1024 aaPredicted RBP21.11■□□□□ 0.97
SMPD4-216ENST00000461187 TRIM37O94972 964 aa21.1■□□□□ 0.97
SMPD4-216ENST00000461187 TCP11L2Q8N4U5 519 aa21.1■□□□□ 0.97
SMPD4-216ENST00000461187 MON2Q7Z3U7 1717 aa21.09■□□□□ 0.97
SMPD4-216ENST00000461187 NLRP6P59044 892 aa21.09■□□□□ 0.97
SMPD4-216ENST00000461187 NUP188Q5SRE5 1749 aa21.09■□□□□ 0.97
SMPD4-216ENST00000461187 THRAP3Q9Y2W1 955 aaKnown RBP21.08■□□□□ 0.97
SMPD4-216ENST00000461187 PEAK1Q9H792 1746 aa21.07■□□□□ 0.96
SMPD4-216ENST00000461187 PDE3BQ13370 1112 aa21.07■□□□□ 0.96
SMPD4-216ENST00000461187 EZH2Q15910 746 aaKnown RBP21.07■□□□□ 0.96
SMPD4-216ENST00000461187 AATKQ6ZMQ8 1374 aa21.07■□□□□ 0.96
SMPD4-216ENST00000461187 CRB1P82279 1406 aa21.06■□□□□ 0.96
SMPD4-216ENST00000461187 CAMKK2Q96RR4 588 aa21.06■□□□□ 0.96
SMPD4-216ENST00000461187 LRRC37A3O60309 1634 aa21.06■□□□□ 0.96
SMPD4-216ENST00000461187 ZBTB7CA1YPR0 619 aa21.04■□□□□ 0.96
SMPD4-216ENST00000461187 ZNF692Q9BU19 519 aaPredicted RBP21.04■□□□□ 0.96
SMPD4-216ENST00000461187 TTC21BQ7Z4L5 1316 aa21.04■□□□□ 0.96
SMPD4-216ENST00000461187 APBA3O96018 575 aa21.03■□□□□ 0.96
SMPD4-216ENST00000461187 CPSF1Q10570 1443 aaKnown RBP21.03■□□□□ 0.96
SMPD4-216ENST00000461187 USP54Q70EL1 1684 aa21.02■□□□□ 0.96
SMPD4-216ENST00000461187 PARD3Q8TEW0 1356 aa21.02■□□□□ 0.96
SMPD4-216ENST00000461187 R3HDM1Q15032 1099 aaKnown RBP21.02■□□□□ 0.96
SMPD4-216ENST00000461187 RGPD3A6NKT7 1758 aaPredicted RBP21.01■□□□□ 0.95
SMPD4-216ENST00000461187 LTN1O94822 1766 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms