RNA–Protein interactions for RNA: ENST00000460801.5

PTPRN-210, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 2,239 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-210ENST00000460801 CCDC61Q9Y6R9 512 aa18.19■□□□□ 0.5
PTPRN-210ENST00000460801 CDC42BPGQ6DT37 1551 aa18.19■□□□□ 0.5
PTPRN-210ENST00000460801 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.19■□□□□ 0.5
PTPRN-210ENST00000460801 PLEKHF1Q96S99 279 aa18.18■□□□□ 0.5
PTPRN-210ENST00000460801 EID1Q9Y6B2 187 aa18.18■□□□□ 0.5
PTPRN-210ENST00000460801 TRHP20396 242 aaPredicted RBP18.17■□□□□ 0.5
PTPRN-210ENST00000460801 MON2Q7Z3U7 1717 aa18.16■□□□□ 0.5
PTPRN-210ENST00000460801 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.16■□□□□ 0.5
PTPRN-210ENST00000460801 U2SURPO15042 1029 aaKnown RBP18.15■□□□□ 0.5
PTPRN-210ENST00000460801 DIAPH1O60610 1272 aaKnown RBP18.15■□□□□ 0.5
PTPRN-210ENST00000460801 PRR36Q9H6K5 1346 aa18.15■□□□□ 0.5
PTPRN-210ENST00000460801 AKAP12Q02952 1782 aa18.15■□□□□ 0.5
PTPRN-210ENST00000460801 POLKQ9UBT6 870 aa18.15■□□□□ 0.5
PTPRN-210ENST00000460801 PTPRUQ92729 1446 aa18.15■□□□□ 0.5
PTPRN-210ENST00000460801 BCAR3O75815 825 aa18.14■□□□□ 0.49
PTPRN-210ENST00000460801 NCKAP5LQ9HCH0 1330 aa18.14■□□□□ 0.49
PTPRN-210ENST00000460801 MAP2P11137 1827 aaKnown RBP18.13■□□□□ 0.49
PTPRN-210ENST00000460801 THEMISQ8N1K5 641 aaPredicted RBP18.13■□□□□ 0.49
PTPRN-210ENST00000460801 SLC26A8Q96RN1 970 aa18.13■□□□□ 0.49
PTPRN-210ENST00000460801 TBX22Q9Y458 520 aa18.13■□□□□ 0.49
PTPRN-210ENST00000460801 FANCIQ9NVI1 1328 aa18.13■□□□□ 0.49
PTPRN-210ENST00000460801 ZNF692Q9BU19 519 aaPredicted RBP18.13■□□□□ 0.49
PTPRN-210ENST00000460801 ITSN1Q15811 1721 aa18.12■□□□□ 0.49
PTPRN-210ENST00000460801 NME9Q86XW9 330 aa18.12■□□□□ 0.49
PTPRN-210ENST00000460801 TMPOP42166 694 aaKnown RBP18.11■□□□□ 0.49
PTPRN-210ENST00000460801 AATKQ6ZMQ8 1374 aa18.11■□□□□ 0.49
PTPRN-210ENST00000460801 FBLN1P23142 703 aa18.1■□□□□ 0.49
PTPRN-210ENST00000460801 PNNQ9H307 717 aaKnown RBP18.1■□□□□ 0.49
PTPRN-210ENST00000460801 TOPAZ1Q8N9V7 1692 aa18.1■□□□□ 0.49
PTPRN-210ENST00000460801 PLPPR3Q6T4P5 718 aa18.1■□□□□ 0.49
PTPRN-210ENST00000460801 MYH16Q9H6N6 1097 aa18.1■□□□□ 0.49
PTPRN-210ENST00000460801 MAPK8IP3Q9UPT6 1336 aa18.09■□□□□ 0.49
PTPRN-210ENST00000460801 DIP2AQ14689 1571 aa18.09■□□□□ 0.49
PTPRN-210ENST00000460801 FCHSD2O94868 740 aa18.09■□□□□ 0.49
PTPRN-210ENST00000460801 AMOTL2Q9Y2J4 779 aa18.09■□□□□ 0.49
PTPRN-210ENST00000460801 PLEKHG3A1L390 1219 aa18.08■□□□□ 0.49
PTPRN-210ENST00000460801 ZRANB1Q9UGI0 708 aa18.08■□□□□ 0.49
PTPRN-210ENST00000460801 TRIM35Q9UPQ4 493 aa18.08■□□□□ 0.49
PTPRN-210ENST00000460801 PDE3AQ14432 1141 aa18.08■□□□□ 0.48
PTPRN-210ENST00000460801 PTCH1Q13635 1447 aa18.08■□□□□ 0.48
PTPRN-210ENST00000460801 RARSP54136 660 aaKnown RBP18.07■□□□□ 0.48
PTPRN-210ENST00000460801 COG3Q96JB2 828 aa18.07■□□□□ 0.48
PTPRN-210ENST00000460801 CDK12Q9NYV4 1490 aaPredicted RBP18.07■□□□□ 0.48
PTPRN-210ENST00000460801 TCERG1O14776 1098 aaKnown RBP18.07■□□□□ 0.48
PTPRN-210ENST00000460801 KDM2BQ8NHM5 1336 aa18.06■□□□□ 0.48
PTPRN-210ENST00000460801 PPM1GO15355 546 aaPredicted RBP18.06■□□□□ 0.48
PTPRN-210ENST00000460801 EMILIN1Q9Y6C2 1016 aa18.06■□□□□ 0.48
PTPRN-210ENST00000460801 NRKQ7Z2Y5 1582 aa18.05■□□□□ 0.48
PTPRN-210ENST00000460801 LRRC7Q96NW7 1537 aa18.05■□□□□ 0.48
PTPRN-210ENST00000460801 RSPH6AQ9H0K4 717 aa18.05■□□□□ 0.48
PTPRN-210ENST00000460801 ACEP12821 1306 aa18.05■□□□□ 0.48
PTPRN-210ENST00000460801 IL16Q14005 1332 aa18.05■□□□□ 0.48
PTPRN-210ENST00000460801 IL13P35225 146 aa18.04■□□□□ 0.48
PTPRN-210ENST00000460801 RIPK4P57078 832 aa18.04■□□□□ 0.48
PTPRN-210ENST00000460801 CEP170BQ9Y4F5 1589 aaPredicted RBP18.04■□□□□ 0.48
PTPRN-210ENST00000460801 CENPQQ7L2Z9 268 aaPredicted RBP18.03■□□□□ 0.48
PTPRN-210ENST00000460801 TTC21BQ7Z4L5 1316 aa18.03■□□□□ 0.48
PTPRN-210ENST00000460801 CT47B1P0C2W7 299 aaPredicted RBP18.03■□□□□ 0.48
PTPRN-210ENST00000460801 XRN1Q8IZH2 1706 aaKnown RBP18.03■□□□□ 0.48
PTPRN-210ENST00000460801 MS4A1P11836 297 aa18.02■□□□□ 0.48
PTPRN-210ENST00000460801 USP6P35125 1406 aa18.02■□□□□ 0.48
PTPRN-210ENST00000460801 PRKAR2BP31323 418 aa18.02■□□□□ 0.47
PTPRN-210ENST00000460801 RIMS1Q86UR5 1692 aaKnown RBP18.01■□□□□ 0.47
PTPRN-210ENST00000460801 SSH2Q76I76 1423 aa18■□□□□ 0.47
PTPRN-210ENST00000460801 NUTM2FA1L443 756 aa18■□□□□ 0.47
PTPRN-210ENST00000460801 CANXP27824 592 aaKnown RBP18■□□□□ 0.47
PTPRN-210ENST00000460801 PIK3R4Q99570 1358 aa18■□□□□ 0.47
PTPRN-210ENST00000460801 OVOS2A0A0J9YW53 1432 aa18■□□□□ 0.47
PTPRN-210ENST00000460801 OVOS2Q6IE36 1432 aa18■□□□□ 0.47
PTPRN-210ENST00000460801 RRS1Q15050 365 aaKnown RBP17.99■□□□□ 0.47
PTPRN-210ENST00000460801 TSR2Q969E8 191 aaKnown RBP17.99■□□□□ 0.47
PTPRN-210ENST00000460801 MSH5O43196 834 aa17.99■□□□□ 0.47
PTPRN-210ENST00000460801 FRAT1Q92837 279 aaPredicted RBP17.99■□□□□ 0.47
PTPRN-210ENST00000460801 NEFMP07197 916 aa17.98■□□□□ 0.47
PTPRN-210ENST00000460801 PANK1Q8TE04 598 aa17.98■□□□□ 0.47
PTPRN-210ENST00000460801 HMOX1P09601 288 aa17.97■□□□□ 0.47
PTPRN-210ENST00000460801 EXOSC9Q06265 439 aaKnown RBP17.97■□□□□ 0.47
PTPRN-210ENST00000460801 NFE2L2Q16236 605 aa17.97■□□□□ 0.47
PTPRN-210ENST00000460801 PHACTR3Q96KR7 559 aa17.97■□□□□ 0.47
PTPRN-210ENST00000460801 NALCNQ8IZF0 1738 aa17.97■□□□□ 0.47
PTPRN-210ENST00000460801 COG6Q9Y2V7 657 aa17.96■□□□□ 0.47
PTPRN-210ENST00000460801 BCL2L13Q9BXK5 485 aa17.96■□□□□ 0.47
PTPRN-210ENST00000460801 USP31Q70CQ4 1352 aa17.95■□□□□ 0.46
PTPRN-210ENST00000460801 KCNA6P17658 529 aa17.95■□□□□ 0.46
PTPRN-210ENST00000460801 RGPD8O14715 1765 aaPredicted RBP17.95■□□□□ 0.46
PTPRN-210ENST00000460801 ZNF142P52746 1687 aaPredicted RBP17.95■□□□□ 0.46
PTPRN-210ENST00000460801 ADAMTSL3P82987 1691 aa17.95■□□□□ 0.46
PTPRN-210ENST00000460801 TTC21AQ8NDW8 1320 aa17.95■□□□□ 0.46
PTPRN-210ENST00000460801 AAMPQ13685 434 aa17.95■□□□□ 0.46
PTPRN-210ENST00000460801 CLUAP1Q96AJ1 413 aa17.95■□□□□ 0.46
PTPRN-210ENST00000460801 RLBP1P12271 317 aa17.94■□□□□ 0.46
PTPRN-210ENST00000460801 PDE4AP27815 886 aa17.94■□□□□ 0.46
PTPRN-210ENST00000460801 SKAP1Q86WV1 359 aa17.94■□□□□ 0.46
PTPRN-210ENST00000460801 ANKARQ7Z5J8 1434 aa17.93■□□□□ 0.46
PTPRN-210ENST00000460801 BACH2Q9BYV9 841 aa17.93■□□□□ 0.46
PTPRN-210ENST00000460801 ANKLE2Q86XL3 938 aa17.92■□□□□ 0.46
PTPRN-210ENST00000460801 PMFBP1Q8TBY8 1022 aa17.92■□□□□ 0.46
PTPRN-210ENST00000460801 TNNQ9UQP3 1299 aa17.92■□□□□ 0.46
PTPRN-210ENST00000460801 SETD1BQ9UPS6 1966 aaKnown RBP17.92■□□□□ 0.46
PTPRN-210ENST00000460801 EIF4A2Q14240 407 aaKnown RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms