RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 TWISTNBQ3B726 338 aaPredicted RBP14.48□□□□□ -0.09
NPHP4-204ENST00000460696 TNNQ9UQP3 1299 aa14.48□□□□□ -0.09
NPHP4-204ENST00000460696 TRIM6-TRIM34B2RNG4 842 aa14.48□□□□□ -0.09
NPHP4-204ENST00000460696 TMEM57Q8N5G2 664 aa14.47□□□□□ -0.09
NPHP4-204ENST00000460696 L1TD1Q5T7N2 865 aaKnown RBP14.47□□□□□ -0.09
NPHP4-204ENST00000460696 NME9Q86XW9 330 aa14.47□□□□□ -0.09
NPHP4-204ENST00000460696 SYTL4Q96C24 671 aaPredicted RBP14.47□□□□□ -0.09
NPHP4-204ENST00000460696 EMILIN1Q9Y6C2 1016 aa14.47□□□□□ -0.09
NPHP4-204ENST00000460696 CDC42BPAQ5VT25 1732 aa14.46□□□□□ -0.09
NPHP4-204ENST00000460696 MAST1Q9Y2H9 1570 aa14.46□□□□□ -0.09
NPHP4-204ENST00000460696 TTC37Q6PGP7 1564 aa14.46□□□□□ -0.09
NPHP4-204ENST00000460696 ZC3H6P61129 1189 aaKnown RBP14.46□□□□□ -0.09
NPHP4-204ENST00000460696 NOL8Q76FK4 1167 aaKnown RBP14.46□□□□□ -0.09
NPHP4-204ENST00000460696 GBP4Q96PP9 640 aa14.46□□□□□ -0.09
NPHP4-204ENST00000460696 BCORL1Q5H9F3 1711 aa14.46□□□□□ -0.09
NPHP4-204ENST00000460696 FCHSD2O94868 740 aa14.46□□□□□ -0.1
NPHP4-204ENST00000460696 DCTN1Q14203 1278 aa14.45□□□□□ -0.1
NPHP4-204ENST00000460696 ABTB2Q8N961 1025 aa14.45□□□□□ -0.1
NPHP4-204ENST00000460696 NUDT16Q96DE0 195 aaKnown RBP14.45□□□□□ -0.1
NPHP4-204ENST00000460696 CCDC61Q9Y6R9 512 aa14.45□□□□□ -0.1
NPHP4-204ENST00000460696 FYB1O15117 783 aa14.45□□□□□ -0.1
NPHP4-204ENST00000460696 TSPYL4Q9UJ04 414 aa14.45□□□□□ -0.1
NPHP4-204ENST00000460696 KCNJ4P48050 445 aa14.44□□□□□ -0.1
NPHP4-204ENST00000460696 TOM1O60784 492 aa14.44□□□□□ -0.1
NPHP4-204ENST00000460696 PCDHB15Q9Y5E8 787 aa14.44□□□□□ -0.1
NPHP4-204ENST00000460696 NINLQ9Y2I6 1382 aa14.44□□□□□ -0.1
NPHP4-204ENST00000460696 EIF2S2P20042 333 aaKnown RBP14.43□□□□□ -0.1
NPHP4-204ENST00000460696 PIK3C2GO75747 1445 aa14.43□□□□□ -0.1
NPHP4-204ENST00000460696 MAGI2Q86UL8 1455 aa14.43□□□□□ -0.1
NPHP4-204ENST00000460696 CT47B1P0C2W7 299 aaPredicted RBP14.43□□□□□ -0.1
NPHP4-204ENST00000460696 CFAP44Q96MT7 982 aa14.43□□□□□ -0.1
NPHP4-204ENST00000460696 NPHP1O15259 732 aa14.43□□□□□ -0.1
NPHP4-204ENST00000460696 TRIM27P14373 513 aa14.43□□□□□ -0.1
NPHP4-204ENST00000460696 FKBP5Q13451 457 aaPredicted RBP14.43□□□□□ -0.1
NPHP4-204ENST00000460696 MCCP23508 829 aa14.42□□□□□ -0.1
NPHP4-204ENST00000460696 ATP10AO60312 1499 aa14.42□□□□□ -0.1
NPHP4-204ENST00000460696 CLASP1Q7Z460 1538 aa14.42□□□□□ -0.1
NPHP4-204ENST00000460696 GOLGA6L3A6NEY3 463 aa14.42□□□□□ -0.1
NPHP4-204ENST00000460696 RLBP1P12271 317 aa14.42□□□□□ -0.1
NPHP4-204ENST00000460696 ATP7AQ04656 1500 aa14.42□□□□□ -0.1
NPHP4-204ENST00000460696 NFE2L2Q16236 605 aa14.42□□□□□ -0.1
NPHP4-204ENST00000460696 RILPL2Q969X0 211 aa14.42□□□□□ -0.1
NPHP4-204ENST00000460696 KCNA6P17658 529 aa14.41□□□□□ -0.1
NPHP4-204ENST00000460696 FOXD4L5Q5VV16 416 aaPredicted RBP14.41□□□□□ -0.1
NPHP4-204ENST00000460696 FOXD4L4Q8WXT5 416 aaPredicted RBP14.41□□□□□ -0.1
NPHP4-204ENST00000460696 POLR3AO14802 1390 aaPredicted RBP14.41□□□□□ -0.1
NPHP4-204ENST00000460696 LMTK3Q96Q04 1460 aa14.41□□□□□ -0.1
NPHP4-204ENST00000460696 NLRP2Q9NX02 1062 aa14.4□□□□□ -0.1
NPHP4-204ENST00000460696 MYO5CQ9NQX4 1742 aa14.4□□□□□ -0.1
NPHP4-204ENST00000460696 CHMP5Q9NZZ3 219 aa14.4□□□□□ -0.1
NPHP4-204ENST00000460696 ANKRD36BQ8N2N9 1353 aa14.4□□□□□ -0.1
NPHP4-204ENST00000460696 NGLY1Q96IV0 654 aa14.4□□□□□ -0.1
NPHP4-204ENST00000460696 ZNF692Q9BU19 519 aaPredicted RBP14.39□□□□□ -0.11
NPHP4-204ENST00000460696 PREX2Q70Z35 1606 aa14.39□□□□□ -0.11
NPHP4-204ENST00000460696 DDX17Q92841 729 aaKnown RBP14.39□□□□□ -0.11
NPHP4-204ENST00000460696 LTKP29376 864 aa14.38□□□□□ -0.11
NPHP4-204ENST00000460696 PRDM11Q9NQV5 511 aa14.38□□□□□ -0.11
NPHP4-204ENST00000460696 MIS18AQ9NYP9 233 aa14.38□□□□□ -0.11
NPHP4-204ENST00000460696 KDM5DQ9BY66 1539 aa14.38□□□□□ -0.11
NPHP4-204ENST00000460696 NAP1L5Q96NT1 182 aaPredicted RBP14.38□□□□□ -0.11
NPHP4-204ENST00000460696 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.38□□□□□ -0.11
NPHP4-204ENST00000460696 BLMP54132 1417 aaPredicted RBP14.38□□□□□ -0.11
NPHP4-204ENST00000460696 WASLO00401 505 aaPredicted RBP14.38□□□□□ -0.11
NPHP4-204ENST00000460696 UHRF1BP1LA0JNW5 1464 aa14.38□□□□□ -0.11
NPHP4-204ENST00000460696 SLC4A2P04920 1241 aa14.37□□□□□ -0.11
NPHP4-204ENST00000460696 TEFQ10587 303 aa14.37□□□□□ -0.11
NPHP4-204ENST00000460696 C8orf34Q49A92 452 aa14.37□□□□□ -0.11
NPHP4-204ENST00000460696 KIAA1211Q6ZU35 1233 aa14.37□□□□□ -0.11
NPHP4-204ENST00000460696 MCM10Q7L590 875 aa14.37□□□□□ -0.11
NPHP4-204ENST00000460696 CHD1LQ86WJ1 897 aa14.37□□□□□ -0.11
NPHP4-204ENST00000460696 ZRANB1Q9UGI0 708 aa14.37□□□□□ -0.11
NPHP4-204ENST00000460696 UGGT1Q9NYU2 1555 aa14.37□□□□□ -0.11
NPHP4-204ENST00000460696 PLCB2Q00722 1185 aa14.37□□□□□ -0.11
NPHP4-204ENST00000460696 IL27Q8NEV9 243 aa14.37□□□□□ -0.11
NPHP4-204ENST00000460696 BRPF3Q9ULD4 1205 aa14.37□□□□□ -0.11
NPHP4-204ENST00000460696 FAM83GA6ND36 823 aa14.36□□□□□ -0.11
NPHP4-204ENST00000460696 PTMAP06454 111 aaKnown RBP14.36□□□□□ -0.11
NPHP4-204ENST00000460696 ADCY10Q96PN6 1610 aa14.36□□□□□ -0.11
NPHP4-204ENST00000460696 ZNF335Q9H4Z2 1342 aaPredicted RBP14.36□□□□□ -0.11
NPHP4-204ENST00000460696 ST18O60284 1047 aa14.36□□□□□ -0.11
NPHP4-204ENST00000460696 NPC1L1Q9UHC9 1359 aa14.36□□□□□ -0.11
NPHP4-204ENST00000460696 ZMYM4Q5VZL5 1548 aa14.36□□□□□ -0.11
NPHP4-204ENST00000460696 ZCCHC11Q5TAX3 1644 aaKnown RBP14.36□□□□□ -0.11
NPHP4-204ENST00000460696 NSD2O96028 1365 aa14.35□□□□□ -0.11
NPHP4-204ENST00000460696 KLHL34Q8N239 644 aa14.35□□□□□ -0.11
NPHP4-204ENST00000460696 FOXD4L6Q3SYB3 417 aaPredicted RBP14.35□□□□□ -0.11
NPHP4-204ENST00000460696 FOXD4L3Q6VB84 417 aaPredicted RBP14.35□□□□□ -0.11
NPHP4-204ENST00000460696 CABLES1Q8TDN4 633 aa14.35□□□□□ -0.11
NPHP4-204ENST00000460696 NEO1Q92859 1461 aa14.35□□□□□ -0.11
NPHP4-204ENST00000460696 A0A1W2PP64 1363 aa14.34□□□□□ -0.11
NPHP4-204ENST00000460696 GCC1Q96CN9 775 aa14.34□□□□□ -0.11
NPHP4-204ENST00000460696 TAOK2Q9UL54 1235 aa14.34□□□□□ -0.11
NPHP4-204ENST00000460696 FGD1P98174 961 aa14.34□□□□□ -0.11
NPHP4-204ENST00000460696 DDX11L8A8MPP1 907 aa14.33□□□□□ -0.11
NPHP4-204ENST00000460696 ABCC11Q96J66 1382 aa14.33□□□□□ -0.12
NPHP4-204ENST00000460696 PTPRTO14522 1441 aa14.33□□□□□ -0.12
NPHP4-204ENST00000460696 CDC45O75419 566 aa14.33□□□□□ -0.12
NPHP4-204ENST00000460696 DDX49Q9Y6V7 483 aaKnown RBP14.33□□□□□ -0.12
NPHP4-204ENST00000460696 SEC24BO95487 1268 aa14.32□□□□□ -0.12
NPHP4-204ENST00000460696 POLKQ9UBT6 870 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms