RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 IQGAP3Q86VI3 1631 aa14.56□□□□□ -0.08
CPSF3-202ENST00000460593 ZSCAN23Q3MJ62 389 aa14.56□□□□□ -0.08
CPSF3-202ENST00000460593 KDM5AP29375 1690 aaKnown RBP14.56□□□□□ -0.08
CPSF3-202ENST00000460593 CEP152O94986 1710 aa14.56□□□□□ -0.08
CPSF3-202ENST00000460593 IFT140Q96RY7 1462 aa14.55□□□□□ -0.08
CPSF3-202ENST00000460593 TMEM132EQ6IEE7 984 aa14.55□□□□□ -0.08
CPSF3-202ENST00000460593 TSC1Q92574 1164 aa14.55□□□□□ -0.08
CPSF3-202ENST00000460593 ZHX1Q9UKY1 873 aaPredicted RBP14.55□□□□□ -0.08
CPSF3-202ENST00000460593 GOLGA6L22H0YM25 854 aa14.55□□□□□ -0.08
CPSF3-202ENST00000460593 KLHL40Q2TBA0 621 aa14.55□□□□□ -0.08
CPSF3-202ENST00000460593 RNF214Q8ND24 703 aa14.55□□□□□ -0.08
CPSF3-202ENST00000460593 SHPRHQ149N8 1683 aa14.55□□□□□ -0.08
CPSF3-202ENST00000460593 CALD1Q05682 793 aaKnown RBP14.55□□□□□ -0.08
CPSF3-202ENST00000460593 SCAPERQ9BY12 1400 aa14.54□□□□□ -0.08
CPSF3-202ENST00000460593 PRPF40AO75400 957 aaKnown RBP14.53□□□□□ -0.08
CPSF3-202ENST00000460593 SAFB2Q14151 953 aaKnown RBP eCLIP14.53□□□□□ -0.08
CPSF3-202ENST00000460593 AFAP1Q8N556 730 aa14.53□□□□□ -0.08
CPSF3-202ENST00000460593 CFAP53Q96M91 514 aa14.53□□□□□ -0.08
CPSF3-202ENST00000460593 ATP10AO60312 1499 aa14.53□□□□□ -0.08
CPSF3-202ENST00000460593 NSFL1CQ9UNZ2 370 aaKnown RBP14.53□□□□□ -0.08
CPSF3-202ENST00000460593 MAST1Q9Y2H9 1570 aa14.53□□□□□ -0.08
CPSF3-202ENST00000460593 ELL2O00472 640 aaPredicted RBP14.53□□□□□ -0.08
CPSF3-202ENST00000460593 TRIM35Q9UPQ4 493 aa14.53□□□□□ -0.08
CPSF3-202ENST00000460593 ZGPATQ8N5A5 531 aaKnown RBP14.52□□□□□ -0.08
CPSF3-202ENST00000460593 UGGT1Q9NYU2 1555 aa14.52□□□□□ -0.09
CPSF3-202ENST00000460593 TPRNQ4KMQ1 711 aa14.52□□□□□ -0.09
CPSF3-202ENST00000460593 NUTM2DQ5VT03 806 aaPredicted RBP14.52□□□□□ -0.09
CPSF3-202ENST00000460593 TTC37Q6PGP7 1564 aa14.51□□□□□ -0.09
CPSF3-202ENST00000460593 FAM177BA6PVY3 158 aa14.51□□□□□ -0.09
CPSF3-202ENST00000460593 TMPOP42166 694 aaKnown RBP14.51□□□□□ -0.09
CPSF3-202ENST00000460593 CCDC27Q2M243 656 aa14.51□□□□□ -0.09
CPSF3-202ENST00000460593 BMP2KLQ5H9B9 411 aa14.51□□□□□ -0.09
CPSF3-202ENST00000460593 LMBRD1Q9NUN5 540 aa14.51□□□□□ -0.09
CPSF3-202ENST00000460593 GPT2Q8TD30 523 aa14.5□□□□□ -0.09
CPSF3-202ENST00000460593 PREX2Q70Z35 1606 aa14.5□□□□□ -0.09
CPSF3-202ENST00000460593 SYCE3A1L190 88 aa14.5□□□□□ -0.09
CPSF3-202ENST00000460593 NOL7Q9UMY1 257 aaKnown RBP14.5□□□□□ -0.09
CPSF3-202ENST00000460593 PTPRTO14522 1441 aa14.5□□□□□ -0.09
CPSF3-202ENST00000460593 FOXD4L6Q3SYB3 417 aaPredicted RBP14.5□□□□□ -0.09
CPSF3-202ENST00000460593 FOXD4L3Q6VB84 417 aaPredicted RBP14.5□□□□□ -0.09
CPSF3-202ENST00000460593 ATAD2Q6PL18 1390 aa14.5□□□□□ -0.09
CPSF3-202ENST00000460593 CD109Q6YHK3 1445 aa14.49□□□□□ -0.09
CPSF3-202ENST00000460593 CLTCL1P53675 1640 aa14.49□□□□□ -0.09
CPSF3-202ENST00000460593 APBB1O00213 710 aa14.49□□□□□ -0.09
CPSF3-202ENST00000460593 THUMPD2Q9BTF0 503 aaKnown RBP14.49□□□□□ -0.09
CPSF3-202ENST00000460593 ZNF518AQ6AHZ1 1483 aa14.49□□□□□ -0.09
CPSF3-202ENST00000460593 C16orf71Q8IYS4 520 aaPredicted RBP14.48□□□□□ -0.09
CPSF3-202ENST00000460593 GGNBP2Q9H3C7 697 aa14.48□□□□□ -0.09
CPSF3-202ENST00000460593 ZNF445P59923 1031 aa14.48□□□□□ -0.09
CPSF3-202ENST00000460593 SIRT2Q8IXJ6 389 aa14.48□□□□□ -0.09
CPSF3-202ENST00000460593 GSPT1P15170 499 aaKnown RBP14.47□□□□□ -0.09
CPSF3-202ENST00000460593 TMEM63CQ9P1W3 806 aa14.47□□□□□ -0.09
CPSF3-202ENST00000460593 TRAPPC8Q9Y2L5 1435 aa14.47□□□□□ -0.09
CPSF3-202ENST00000460593 DUOX2Q9NRD8 1548 aa14.47□□□□□ -0.09
CPSF3-202ENST00000460593 PPIP5K1Q6PFW1 1433 aa14.47□□□□□ -0.09
CPSF3-202ENST00000460593 FBLN1P23142 703 aa14.46□□□□□ -0.09
CPSF3-202ENST00000460593 ZNF830Q96NB3 372 aaPredicted RBP14.46□□□□□ -0.09
CPSF3-202ENST00000460593 CABP2Q9NPB3 220 aa14.46□□□□□ -0.09
CPSF3-202ENST00000460593 ZKSCAN5Q9Y2L8 839 aa14.46□□□□□ -0.09
CPSF3-202ENST00000460593 KIF16BQ96L93 1317 aa14.46□□□□□ -0.09
CPSF3-202ENST00000460593 SPHKAPQ2M3C7 1700 aa14.46□□□□□ -0.09
CPSF3-202ENST00000460593 KANK1Q14678 1352 aa14.46□□□□□ -0.09
CPSF3-202ENST00000460593 KIF3BO15066 747 aa14.46□□□□□ -0.1
CPSF3-202ENST00000460593 PTMSP20962 102 aa14.46□□□□□ -0.1
CPSF3-202ENST00000460593 C17orf53Q8N3J3 647 aaPredicted RBP14.46□□□□□ -0.1
CPSF3-202ENST00000460593 OTUD7AQ8TE49 926 aaPredicted RBP14.46□□□□□ -0.1
CPSF3-202ENST00000460593 ZNF500O60304 480 aaPredicted RBP14.45□□□□□ -0.1
CPSF3-202ENST00000460593 PDLIM2Q96JY6 352 aa14.45□□□□□ -0.1
CPSF3-202ENST00000460593 PLEKHF1Q96S99 279 aa14.45□□□□□ -0.1
CPSF3-202ENST00000460593 ZDHHC9Q9Y397 364 aa14.45□□□□□ -0.1
CPSF3-202ENST00000460593 ERCC6Q03468 1493 aa14.45□□□□□ -0.1
CPSF3-202ENST00000460593 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.45□□□□□ -0.1
CPSF3-202ENST00000460593 NOL8Q76FK4 1167 aaKnown RBP14.44□□□□□ -0.1
CPSF3-202ENST00000460593 TSPYL6Q8N831 410 aa14.44□□□□□ -0.1
CPSF3-202ENST00000460593 SPAG9O60271 1321 aaKnown RBP14.44□□□□□ -0.1
CPSF3-202ENST00000460593 ZBTB7BO15156 539 aaPredicted RBP14.44□□□□□ -0.1
CPSF3-202ENST00000460593 NOS1P29475 1434 aa14.43□□□□□ -0.1
CPSF3-202ENST00000460593 CDC45O75419 566 aa14.43□□□□□ -0.1
CPSF3-202ENST00000460593 PTMAP06454 111 aaKnown RBP14.43□□□□□ -0.1
CPSF3-202ENST00000460593 DNTTIP2Q5QJE6 756 aaKnown RBP14.43□□□□□ -0.1
CPSF3-202ENST00000460593 IPO8O15397 1037 aaKnown RBP14.43□□□□□ -0.1
CPSF3-202ENST00000460593 TRPM2O94759 1503 aa14.42□□□□□ -0.1
CPSF3-202ENST00000460593 CLEC17AQ6ZS10 378 aa14.42□□□□□ -0.1
CPSF3-202ENST00000460593 ABCA6Q8N139 1617 aa14.42□□□□□ -0.1
CPSF3-202ENST00000460593 IBTKQ9P2D0 1353 aaPredicted RBP14.41□□□□□ -0.1
CPSF3-202ENST00000460593 CYP2E1P05181 493 aaPredicted RBP14.41□□□□□ -0.1
CPSF3-202ENST00000460593 SMARCA5O60264 1052 aaPredicted RBP14.41□□□□□ -0.1
CPSF3-202ENST00000460593 GDPD2Q9HCC8 539 aa14.41□□□□□ -0.1
CPSF3-202ENST00000460593 CBX1P83916 185 aa14.4□□□□□ -0.1
CPSF3-202ENST00000460593 CT47B1P0C2W7 299 aaPredicted RBP14.4□□□□□ -0.1
CPSF3-202ENST00000460593 TERF1P54274 439 aa14.4□□□□□ -0.1
CPSF3-202ENST00000460593 NUCB2P80303 420 aa14.4□□□□□ -0.1
CPSF3-202ENST00000460593 SHROOM2Q13796 1616 aa14.4□□□□□ -0.1
CPSF3-202ENST00000460593 SASS6Q6UVJ0 657 aa14.4□□□□□ -0.1
CPSF3-202ENST00000460593 PLEKHM2Q8IWE5 1019 aa14.4□□□□□ -0.1
CPSF3-202ENST00000460593 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.4□□□□□ -0.1
CPSF3-202ENST00000460593 DYNC1I1O14576 645 aa14.39□□□□□ -0.11
CPSF3-202ENST00000460593 EFCAB2Q5VUJ9 269 aa14.39□□□□□ -0.11
CPSF3-202ENST00000460593 LRSAM1Q6UWE0 723 aa14.39□□□□□ -0.11
CPSF3-202ENST00000460593 MAP7D2Q96T17 732 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms