RNA–Protein interactions for RNA: ENST00000460431.1

SMARCD3-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 3

Gene SMARCD3, Length 673 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-204ENST00000460431 ARHGEF10O15013 1369 aa23.31■■□□□ 1.32
SMARCD3-204ENST00000460431 ALS2Q96Q42 1657 aa23.3■■□□□ 1.32
SMARCD3-204ENST00000460431 LMOD2Q6P5Q4 547 aa23.3■■□□□ 1.32
SMARCD3-204ENST00000460431 PPIP5K1Q6PFW1 1433 aa23.3■■□□□ 1.32
SMARCD3-204ENST00000460431 MARF1Q9Y4F3 1742 aaKnown RBP23.3■■□□□ 1.32
SMARCD3-204ENST00000460431 CABLES1Q8TDN4 633 aa23.29■■□□□ 1.32
SMARCD3-204ENST00000460431 GJD4Q96KN9 370 aaPredicted RBP23.28■■□□□ 1.32
SMARCD3-204ENST00000460431 SLIT2O94813 1529 aa23.28■■□□□ 1.32
SMARCD3-204ENST00000460431 UNC5CLQ8IV45 518 aa23.27■■□□□ 1.32
SMARCD3-204ENST00000460431 CABP1Q9NZU7 370 aa23.27■■□□□ 1.32
SMARCD3-204ENST00000460431 PAK3O75914 559 aaPredicted RBP23.26■■□□□ 1.31
SMARCD3-204ENST00000460431 ST20-MTHFSA0A0A6YYL1 179 aa23.24■■□□□ 1.31
SMARCD3-204ENST00000460431 ABCA3Q99758 1704 aa23.23■■□□□ 1.31
SMARCD3-204ENST00000460431 PLEKHG5O94827 1062 aa23.23■■□□□ 1.31
SMARCD3-204ENST00000460431 HAP1P54257 671 aaPredicted RBP23.23■■□□□ 1.31
SMARCD3-204ENST00000460431 TESK2Q96S53 571 aa23.23■■□□□ 1.31
SMARCD3-204ENST00000460431 ATAD2Q6PL18 1390 aa23.23■■□□□ 1.31
SMARCD3-204ENST00000460431 BRD4O60885 1362 aaPredicted RBP23.2■■□□□ 1.3
SMARCD3-204ENST00000460431 SLC24A1O60721 1099 aa23.2■■□□□ 1.3
SMARCD3-204ENST00000460431 PUS7Q96PZ0 661 aaKnown RBP23.2■■□□□ 1.3
SMARCD3-204ENST00000460431 USP47Q96K76 1375 aa23.19■■□□□ 1.3
SMARCD3-204ENST00000460431 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.19■■□□□ 1.3
SMARCD3-204ENST00000460431 ZNF692Q9BU19 519 aaPredicted RBP23.18■■□□□ 1.3
SMARCD3-204ENST00000460431 CRYBG1Q9Y4K1 1723 aa23.18■■□□□ 1.3
SMARCD3-204ENST00000460431 AKAP12Q02952 1782 aa23.17■■□□□ 1.3
SMARCD3-204ENST00000460431 FAM83GA6ND36 823 aa23.17■■□□□ 1.3
SMARCD3-204ENST00000460431 VPS72Q15906 364 aa23.17■■□□□ 1.3
SMARCD3-204ENST00000460431 GLI3P10071 1580 aa23.17■■□□□ 1.3
SMARCD3-204ENST00000460431 USP6P35125 1406 aa23.16■■□□□ 1.3
SMARCD3-204ENST00000460431 ABTB2Q8N961 1025 aa23.16■■□□□ 1.3
SMARCD3-204ENST00000460431 CPSF1Q10570 1443 aaKnown RBP23.15■■□□□ 1.3
SMARCD3-204ENST00000460431 SSH2Q76I76 1423 aa23.14■■□□□ 1.29
SMARCD3-204ENST00000460431 NUTM2GQ5VZR2 741 aa23.13■■□□□ 1.29
SMARCD3-204ENST00000460431 ONECUT3O60422 494 aaPredicted RBP23.11■■□□□ 1.29
SMARCD3-204ENST00000460431 NLRP13Q86W25 1043 aa23.11■■□□□ 1.29
SMARCD3-204ENST00000460431 NWD2Q9ULI1 1742 aa23.11■■□□□ 1.29
SMARCD3-204ENST00000460431 TMC1Q8TDI8 760 aa23.1■■□□□ 1.29
SMARCD3-204ENST00000460431 SLC12A5Q9H2X9 1139 aa23.1■■□□□ 1.29
SMARCD3-204ENST00000460431 PHRF1Q9P1Y6 1649 aaKnown RBP23.1■■□□□ 1.29
SMARCD3-204ENST00000460431 PLCH1Q4KWH8 1693 aa23.09■■□□□ 1.29
SMARCD3-204ENST00000460431 TMF1P82094 1093 aa23.09■■□□□ 1.29
SMARCD3-204ENST00000460431 CCDC125Q86Z20 511 aa23.09■■□□□ 1.29
SMARCD3-204ENST00000460431 SEPT12Q8IYM1 358 aa23.09■■□□□ 1.29
SMARCD3-204ENST00000460431 KTN1Q86UP2 1357 aaKnown RBP23.09■■□□□ 1.29
SMARCD3-204ENST00000460431 USP19O94966 1318 aa23.08■■□□□ 1.29
SMARCD3-204ENST00000460431 TTC21BQ7Z4L5 1316 aa23.08■■□□□ 1.29
SMARCD3-204ENST00000460431 MON2Q7Z3U7 1717 aa23.08■■□□□ 1.29
SMARCD3-204ENST00000460431 BTG4Q9NY30 223 aa23.08■■□□□ 1.29
SMARCD3-204ENST00000460431 CCDC9Q9Y3X0 531 aaKnown RBP23.08■■□□□ 1.29
SMARCD3-204ENST00000460431 CD163L1Q9NR16 1453 aa23.08■■□□□ 1.29
SMARCD3-204ENST00000460431 COL14A1Q05707 1796 aaKnown RBP23.07■■□□□ 1.28
SMARCD3-204ENST00000460431 NLRP6P59044 892 aa23.06■■□□□ 1.28
SMARCD3-204ENST00000460431 PIK3C2AO00443 1686 aa23.06■■□□□ 1.28
SMARCD3-204ENST00000460431 TTC21AQ8NDW8 1320 aa23.06■■□□□ 1.28
SMARCD3-204ENST00000460431 NRKQ7Z2Y5 1582 aa23.06■■□□□ 1.28
SMARCD3-204ENST00000460431 NINLQ9Y2I6 1382 aa23.05■■□□□ 1.28
SMARCD3-204ENST00000460431 HDGFL2Q7Z4V5 671 aaPredicted RBP23.05■■□□□ 1.28
SMARCD3-204ENST00000460431 PRDM11Q9NQV5 511 aa23.05■■□□□ 1.28
SMARCD3-204ENST00000460431 EP400Q96L91 3159 aa23.05■■□□□ 1.28
SMARCD3-204ENST00000460431 KIAA0232Q92628 1395 aa23.04■■□□□ 1.28
SMARCD3-204ENST00000460431 GCP02774 474 aa23.04■■□□□ 1.28
SMARCD3-204ENST00000460431 ZC3H6P61129 1189 aaKnown RBP23.04■■□□□ 1.28
SMARCD3-204ENST00000460431 TERF2IPQ9NYB0 399 aa23.04■■□□□ 1.28
SMARCD3-204ENST00000460431 CDCA8Q53HL2 280 aa23.03■■□□□ 1.28
SMARCD3-204ENST00000460431 NRAPQ86VF7 1730 aa23.02■■□□□ 1.28
SMARCD3-204ENST00000460431 EIF4G2P78344 907 aaKnown RBP eCLIP23.01■■□□□ 1.27
SMARCD3-204ENST00000460431 A0A1W2PP64 1363 aa23.01■■□□□ 1.27
SMARCD3-204ENST00000460431 CPDO75976 1380 aa23.01■■□□□ 1.27
SMARCD3-204ENST00000460431 SLIT3O75094 1523 aa23■■□□□ 1.27
SMARCD3-204ENST00000460431 CHRNA2Q15822 529 aa23■■□□□ 1.27
SMARCD3-204ENST00000460431 BLMP54132 1417 aaPredicted RBP22.99■■□□□ 1.27
SMARCD3-204ENST00000460431 FAM98CQ17RN3 349 aaKnown RBP22.99■■□□□ 1.27
SMARCD3-204ENST00000460431 KRT27Q7Z3Y8 459 aa22.99■■□□□ 1.27
SMARCD3-204ENST00000460431 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.99■■□□□ 1.27
SMARCD3-204ENST00000460431 EDC4Q6P2E9 1401 aaKnown RBP22.99■■□□□ 1.27
SMARCD3-204ENST00000460431 BRWD3Q6RI45 1802 aa22.98■■□□□ 1.27
SMARCD3-204ENST00000460431 SPATA31A5Q5VU36 1347 aa22.98■■□□□ 1.27
SMARCD3-204ENST00000460431 SPATA31A7Q8IWB4 1347 aa22.98■■□□□ 1.27
SMARCD3-204ENST00000460431 HSPA5P11021 654 aaKnown RBP22.97■■□□□ 1.27
SMARCD3-204ENST00000460431 USP31Q70CQ4 1352 aa22.96■■□□□ 1.27
SMARCD3-204ENST00000460431 NME9Q86XW9 330 aa22.95■■□□□ 1.26
SMARCD3-204ENST00000460431 ANKRD36BQ8N2N9 1353 aa22.95■■□□□ 1.26
SMARCD3-204ENST00000460431 USP54Q70EL1 1684 aa22.94■■□□□ 1.26
SMARCD3-204ENST00000460431 A0A0G2JS52 829 aa22.94■■□□□ 1.26
SMARCD3-204ENST00000460431 MYT1Q01538 1121 aa22.94■■□□□ 1.26
SMARCD3-204ENST00000460431 KCNH5Q8NCM2 988 aa22.94■■□□□ 1.26
SMARCD3-204ENST00000460431 ZRANB1Q9UGI0 708 aa22.94■■□□□ 1.26
SMARCD3-204ENST00000460431 LMO7Q8WWI1 1683 aa22.93■■□□□ 1.26
SMARCD3-204ENST00000460431 DEFB132Q7Z7B7 95 aa22.93■■□□□ 1.26
SMARCD3-204ENST00000460431 CAMTA1Q9Y6Y1 1673 aa22.93■■□□□ 1.26
SMARCD3-204ENST00000460431 SPATA31A1Q5TZJ5 1347 aa22.91■■□□□ 1.26
SMARCD3-204ENST00000460431 ARHGEF25Q86VW2 580 aa22.91■■□□□ 1.26
SMARCD3-204ENST00000460431 MYOM1P52179 1685 aa22.9■■□□□ 1.26
SMARCD3-204ENST00000460431 AATKQ6ZMQ8 1374 aa22.9■■□□□ 1.26
SMARCD3-204ENST00000460431 COL18A1P39060 1754 aa22.9■■□□□ 1.26
SMARCD3-204ENST00000460431 EVA1CP58658 441 aa22.89■■□□□ 1.25
SMARCD3-204ENST00000460431 SF3B2Q13435 895 aaKnown RBP22.89■■□□□ 1.25
SMARCD3-204ENST00000460431 STRN4Q9NRL3 753 aa22.89■■□□□ 1.25
SMARCD3-204ENST00000460431 NFAT5O94916 1531 aa22.88■■□□□ 1.25
SMARCD3-204ENST00000460431 SOX12O15370 315 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms