RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 CCT4P50991 539 aaKnown RBP17.9■□□□□ 0.46
PTPRU-205ENST00000460170 GPRASP1Q5JY77 1395 aa17.9■□□□□ 0.46
PTPRU-205ENST00000460170 DUSP27Q5VZP5 1158 aa17.9■□□□□ 0.46
PTPRU-205ENST00000460170 DISP3Q9P2K9 1392 aa17.9■□□□□ 0.46
PTPRU-205ENST00000460170 RASSF8Q8NHQ8 419 aa17.89■□□□□ 0.45
PTPRU-205ENST00000460170 MSH5O43196 834 aa17.89■□□□□ 0.45
PTPRU-205ENST00000460170 ADGRL1O94910 1474 aa17.89■□□□□ 0.45
PTPRU-205ENST00000460170 RRS1Q15050 365 aaKnown RBP17.89■□□□□ 0.45
PTPRU-205ENST00000460170 MCM2P49736 904 aa17.89■□□□□ 0.45
PTPRU-205ENST00000460170 HSP90AA2PQ14568 343 aaPredicted RBP17.89■□□□□ 0.45
PTPRU-205ENST00000460170 CCDC61Q9Y6R9 512 aa17.89■□□□□ 0.45
PTPRU-205ENST00000460170 TMEM57Q8N5G2 664 aa17.88■□□□□ 0.45
PTPRU-205ENST00000460170 PLEKHO1Q53GL0 409 aaPredicted RBP17.88■□□□□ 0.45
PTPRU-205ENST00000460170 HDGFL1Q5TGJ6 251 aa17.88■□□□□ 0.45
PTPRU-205ENST00000460170 BICD2Q8TD16 824 aa17.88■□□□□ 0.45
PTPRU-205ENST00000460170 CPLX1O14810 134 aa17.87■□□□□ 0.45
PTPRU-205ENST00000460170 SYNE3Q6ZMZ3 975 aa17.87■□□□□ 0.45
PTPRU-205ENST00000460170 ATF3P18847 181 aa17.86■□□□□ 0.45
PTPRU-205ENST00000460170 CD109Q6YHK3 1445 aa17.86■□□□□ 0.45
PTPRU-205ENST00000460170 THEMISQ8N1K5 641 aaPredicted RBP17.86■□□□□ 0.45
PTPRU-205ENST00000460170 SKAP1Q86WV1 359 aa17.86■□□□□ 0.45
PTPRU-205ENST00000460170 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.86■□□□□ 0.45
PTPRU-205ENST00000460170 NASPP49321 788 aaPredicted RBP17.85■□□□□ 0.45
PTPRU-205ENST00000460170 SSH1Q8WYL5 1049 aa17.85■□□□□ 0.45
PTPRU-205ENST00000460170 NUDT16Q96DE0 195 aaKnown RBP17.85■□□□□ 0.45
PTPRU-205ENST00000460170 ESCO1Q5FWF5 840 aa17.85■□□□□ 0.45
PTPRU-205ENST00000460170 NUP153P49790 1475 aaKnown RBP17.85■□□□□ 0.45
PTPRU-205ENST00000460170 AKAP17AQ02040 695 aaKnown RBP17.85■□□□□ 0.45
PTPRU-205ENST00000460170 RALGAPBQ86X10 1494 aa17.85■□□□□ 0.45
PTPRU-205ENST00000460170 LRPPRCP42704 1394 aaKnown RBP17.85■□□□□ 0.45
PTPRU-205ENST00000460170 APPP05067 770 aa17.85■□□□□ 0.45
PTPRU-205ENST00000460170 ABCC11Q96J66 1382 aa17.85■□□□□ 0.45
PTPRU-205ENST00000460170 TRDNQ13061 729 aa17.85■□□□□ 0.45
PTPRU-205ENST00000460170 NEUROD6Q96NK8 337 aa17.85■□□□□ 0.45
PTPRU-205ENST00000460170 FAM43AQ8N2R8 423 aa17.84■□□□□ 0.45
PTPRU-205ENST00000460170 SLC26A8Q96RN1 970 aa17.84■□□□□ 0.45
PTPRU-205ENST00000460170 FAM135AQ9P2D6 1515 aa17.84■□□□□ 0.45
PTPRU-205ENST00000460170 RAPGEF6Q8TEU7 1601 aa17.84■□□□□ 0.45
PTPRU-205ENST00000460170 LRRCC1Q9C099 1032 aa17.84■□□□□ 0.45
PTPRU-205ENST00000460170 TMX4Q9H1E5 349 aaPredicted RBP17.84■□□□□ 0.45
PTPRU-205ENST00000460170 FSD1Q9BTV5 496 aa17.83■□□□□ 0.45
PTPRU-205ENST00000460170 TCOF1Q13428 1488 aaKnown RBP17.83■□□□□ 0.45
PTPRU-205ENST00000460170 K7ELQ4 463 aaPredicted RBP17.83■□□□□ 0.44
PTPRU-205ENST00000460170 MBD3O95983 291 aa17.83■□□□□ 0.44
PTPRU-205ENST00000460170 PSMA5P28066 241 aa17.83■□□□□ 0.44
PTPRU-205ENST00000460170 RPAP2Q8IXW5 612 aaPredicted RBP17.83■□□□□ 0.44
PTPRU-205ENST00000460170 BRPF3Q9ULD4 1205 aa17.83■□□□□ 0.44
PTPRU-205ENST00000460170 CAVIN1Q6NZI2 390 aaKnown RBP17.83■□□□□ 0.44
PTPRU-205ENST00000460170 CREBRFQ8IUR6 639 aa17.83■□□□□ 0.44
PTPRU-205ENST00000460170 TRIM29Q14134 588 aa17.82■□□□□ 0.44
PTPRU-205ENST00000460170 WAPLQ7Z5K2 1190 aa17.82■□□□□ 0.44
PTPRU-205ENST00000460170 THUMPD2Q9BTF0 503 aaKnown RBP17.82■□□□□ 0.44
PTPRU-205ENST00000460170 ATP10BO94823 1461 aa17.82■□□□□ 0.44
PTPRU-205ENST00000460170 SRCIN1Q9C0H9 1055 aa17.82■□□□□ 0.44
PTPRU-205ENST00000460170 ALDH1L2Q3SY69 923 aa17.81■□□□□ 0.44
PTPRU-205ENST00000460170 IDI1Q13907 227 aa17.81■□□□□ 0.44
PTPRU-205ENST00000460170 ERC1Q8IUD2 1116 aa17.81■□□□□ 0.44
PTPRU-205ENST00000460170 C14orf93Q9H972 538 aaKnown RBP17.81■□□□□ 0.44
PTPRU-205ENST00000460170 CWC22Q9HCG8 908 aaKnown RBP17.81■□□□□ 0.44
PTPRU-205ENST00000460170 PRPF40AO75400 957 aaKnown RBP17.8■□□□□ 0.44
PTPRU-205ENST00000460170 AMER1Q5JTC6 1135 aaPredicted RBP17.8■□□□□ 0.44
PTPRU-205ENST00000460170 NOS1P29475 1434 aa17.8■□□□□ 0.44
PTPRU-205ENST00000460170 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.79■□□□□ 0.44
PTPRU-205ENST00000460170 SYTL4Q96C24 671 aaPredicted RBP17.79■□□□□ 0.44
PTPRU-205ENST00000460170 DHX29Q7Z478 1369 aaKnown RBP17.79■□□□□ 0.44
PTPRU-205ENST00000460170 SASS6Q6UVJ0 657 aa17.79■□□□□ 0.44
PTPRU-205ENST00000460170 CFAP43Q8NDM7 1665 aa17.79■□□□□ 0.44
PTPRU-205ENST00000460170 HIP1O00291 1037 aa17.79■□□□□ 0.44
PTPRU-205ENST00000460170 CIZ1Q9ULV3 898 aaPredicted RBP17.79■□□□□ 0.44
PTPRU-205ENST00000460170 CTTNBP2Q8WZ74 1663 aa17.79■□□□□ 0.44
PTPRU-205ENST00000460170 ZNF530Q6P9A1 599 aaPredicted RBP17.79■□□□□ 0.44
PTPRU-205ENST00000460170 IFT57Q9NWB7 429 aa17.79■□□□□ 0.44
PTPRU-205ENST00000460170 RNF214Q8ND24 703 aa17.79■□□□□ 0.44
PTPRU-205ENST00000460170 MCM4P33991 863 aa17.78■□□□□ 0.44
PTPRU-205ENST00000460170 CCDC73Q6ZRK6 1079 aa17.78■□□□□ 0.44
PTPRU-205ENST00000460170 FANCAO15360 1455 aa17.78■□□□□ 0.44
PTPRU-205ENST00000460170 RALYLQ86SE5 291 aaKnown RBP17.77■□□□□ 0.44
PTPRU-205ENST00000460170 WASHC4Q2M389 1173 aa17.77■□□□□ 0.44
PTPRU-205ENST00000460170 TPD52L1Q16890 204 aaPredicted RBP17.77■□□□□ 0.44
PTPRU-205ENST00000460170 NSD2O96028 1365 aa17.77■□□□□ 0.43
PTPRU-205ENST00000460170 PRAG1Q86YV5 1406 aa17.76■□□□□ 0.43
PTPRU-205ENST00000460170 TPM3P06753 285 aa17.76■□□□□ 0.43
PTPRU-205ENST00000460170 PDCP20941 246 aa17.76■□□□□ 0.43
PTPRU-205ENST00000460170 PROSER2Q86WR7 435 aaPredicted RBP17.76■□□□□ 0.43
PTPRU-205ENST00000460170 NME9Q86XW9 330 aa17.75■□□□□ 0.43
PTPRU-205ENST00000460170 G3V3G9 751 aa17.75■□□□□ 0.43
PTPRU-205ENST00000460170 DCAF8Q5TAQ9 597 aa17.75■□□□□ 0.43
PTPRU-205ENST00000460170 NFXL1Q6ZNB6 911 aa17.75■□□□□ 0.43
PTPRU-205ENST00000460170 PARD3Q8TEW0 1356 aa17.75■□□□□ 0.43
PTPRU-205ENST00000460170 ITSN2Q9NZM3 1697 aa17.75■□□□□ 0.43
PTPRU-205ENST00000460170 CLSTN1O94985 981 aa17.75■□□□□ 0.43
PTPRU-205ENST00000460170 FOSBP53539 338 aa17.75■□□□□ 0.43
PTPRU-205ENST00000460170 CCDC27Q2M243 656 aa17.75■□□□□ 0.43
PTPRU-205ENST00000460170 NUP160Q12769 1436 aa17.74■□□□□ 0.43
PTPRU-205ENST00000460170 TRIM27P14373 513 aa17.74■□□□□ 0.43
PTPRU-205ENST00000460170 DCTN1Q14203 1278 aa17.74■□□□□ 0.43
PTPRU-205ENST00000460170 EMILIN1Q9Y6C2 1016 aa17.74■□□□□ 0.43
PTPRU-205ENST00000460170 TATP17735 454 aaPredicted RBP17.74■□□□□ 0.43
PTPRU-205ENST00000460170 MCM10Q7L590 875 aa17.74■□□□□ 0.43
PTPRU-205ENST00000460170 IL27Q8NEV9 243 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms