RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 PHRF1Q9P1Y6 1649 aaKnown RBP32.91■■■□□ 2.86
PTPN4-207ENST00000460162 POLR3AO14802 1390 aaPredicted RBP32.9■■■□□ 2.86
PTPN4-207ENST00000460162 BRWD3Q6RI45 1802 aa32.9■■■□□ 2.86
PTPN4-207ENST00000460162 CENPJQ9HC77 1338 aaPredicted RBP32.86■■■□□ 2.85
PTPN4-207ENST00000460162 FAM83GA6ND36 823 aa32.86■■■□□ 2.85
PTPN4-207ENST00000460162 PAK3O75914 559 aaPredicted RBP32.85■■■□□ 2.85
PTPN4-207ENST00000460162 CCDC61Q9Y6R9 512 aa32.85■■■□□ 2.85
PTPN4-207ENST00000460162 L3MBTL2Q969R5 705 aa32.84■■■□□ 2.85
PTPN4-207ENST00000460162 CCDC125Q86Z20 511 aa32.81■■■□□ 2.84
PTPN4-207ENST00000460162 CCDC9Q9Y3X0 531 aaKnown RBP32.81■■■□□ 2.84
PTPN4-207ENST00000460162 ACEP12821 1306 aa32.8■■■□□ 2.84
PTPN4-207ENST00000460162 PLEKHG3A1L390 1219 aa32.8■■■□□ 2.84
PTPN4-207ENST00000460162 BTG4Q9NY30 223 aa32.79■■■□□ 2.84
PTPN4-207ENST00000460162 SIN3AQ96ST3 1273 aa32.78■■■□□ 2.84
PTPN4-207ENST00000460162 PPIP5K1Q6PFW1 1433 aa32.77■■■□□ 2.84
PTPN4-207ENST00000460162 ONECUT3O60422 494 aaPredicted RBP32.77■■■□□ 2.84
PTPN4-207ENST00000460162 SEPT12Q8IYM1 358 aa32.77■■■□□ 2.84
PTPN4-207ENST00000460162 NRKQ7Z2Y5 1582 aa32.77■■■□□ 2.84
PTPN4-207ENST00000460162 SRPK2P78362 688 aaKnown RBP32.75■■■□□ 2.83
PTPN4-207ENST00000460162 NBPF8Q3BBV2 869 aa32.75■■■□□ 2.83
PTPN4-207ENST00000460162 BLMP54132 1417 aaPredicted RBP32.75■■■□□ 2.83
PTPN4-207ENST00000460162 PRDM11Q9NQV5 511 aa32.74■■■□□ 2.83
PTPN4-207ENST00000460162 KIAA0232Q92628 1395 aa32.72■■■□□ 2.83
PTPN4-207ENST00000460162 ROCK2O75116 1388 aaKnown RBP32.71■■■□□ 2.83
PTPN4-207ENST00000460162 BRD4O60885 1362 aaPredicted RBP32.7■■■□□ 2.83
PTPN4-207ENST00000460162 THSD7AQ9UPZ6 1657 aa32.7■■■□□ 2.83
PTPN4-207ENST00000460162 NEUROD1Q13562 356 aa32.7■■■□□ 2.83
PTPN4-207ENST00000460162 CABP2Q9NPB3 220 aa32.69■■■□□ 2.82
PTPN4-207ENST00000460162 KRT27Q7Z3Y8 459 aa32.67■■■□□ 2.82
PTPN4-207ENST00000460162 SPATA31A5Q5VU36 1347 aa32.67■■■□□ 2.82
PTPN4-207ENST00000460162 SPATA31A7Q8IWB4 1347 aa32.67■■■□□ 2.82
PTPN4-207ENST00000460162 USP19O94966 1318 aa32.66■■■□□ 2.82
PTPN4-207ENST00000460162 A0A0G2JS52 829 aa32.65■■■□□ 2.82
PTPN4-207ENST00000460162 MYT1Q01538 1121 aa32.65■■■□□ 2.82
PTPN4-207ENST00000460162 FAM98CQ17RN3 349 aaKnown RBP32.65■■■□□ 2.82
PTPN4-207ENST00000460162 NUTM2GQ5VZR2 741 aa32.65■■■□□ 2.82
PTPN4-207ENST00000460162 USP6P35125 1406 aa32.64■■■□□ 2.82
PTPN4-207ENST00000460162 EVC2Q86UK5 1308 aa32.64■■■□□ 2.82
PTPN4-207ENST00000460162 ABTB2Q8N961 1025 aa32.64■■■□□ 2.82
PTPN4-207ENST00000460162 LMO7Q8WWI1 1683 aa32.64■■■□□ 2.82
PTPN4-207ENST00000460162 CPDO75976 1380 aa32.62■■■□□ 2.81
PTPN4-207ENST00000460162 ZC3H6P61129 1189 aaKnown RBP32.6■■■□□ 2.81
PTPN4-207ENST00000460162 CHRNA2Q15822 529 aa32.6■■■□□ 2.81
PTPN4-207ENST00000460162 AKAP12Q02952 1782 aa32.59■■■□□ 2.81
PTPN4-207ENST00000460162 NLRP13Q86W25 1043 aa32.58■■■□□ 2.81
PTPN4-207ENST00000460162 PIK3C2AO00443 1686 aa32.58■■■□□ 2.81
PTPN4-207ENST00000460162 RGPD1P0DJD0 1748 aa32.57■■■□□ 2.81
PTPN4-207ENST00000460162 SLIT3O75094 1523 aa32.57■■■□□ 2.8
PTPN4-207ENST00000460162 SPATA31A1Q5TZJ5 1347 aa32.57■■■□□ 2.8
PTPN4-207ENST00000460162 SF3B2Q13435 895 aaKnown RBP32.57■■■□□ 2.8
PTPN4-207ENST00000460162 CABP1Q9NZU7 370 aa32.57■■■□□ 2.8
PTPN4-207ENST00000460162 ZRANB1Q9UGI0 708 aa32.57■■■□□ 2.8
PTPN4-207ENST00000460162 SSH2Q76I76 1423 aa32.57■■■□□ 2.8
PTPN4-207ENST00000460162 CAMTA1Q9Y6Y1 1673 aa32.56■■■□□ 2.8
PTPN4-207ENST00000460162 SBNO2Q9Y2G9 1366 aa32.55■■■□□ 2.8
PTPN4-207ENST00000460162 STRN4Q9NRL3 753 aa32.53■■■□□ 2.8
PTPN4-207ENST00000460162 TONSLQ96HA7 1378 aa32.51■■■□□ 2.79
PTPN4-207ENST00000460162 GCP02774 474 aa32.5■■■□□ 2.79
PTPN4-207ENST00000460162 DEFB132Q7Z7B7 95 aa32.49■■■□□ 2.79
PTPN4-207ENST00000460162 MON2Q7Z3U7 1717 aa32.48■■■□□ 2.79
PTPN4-207ENST00000460162 TNS1Q9HBL0 1735 aaKnown RBP32.48■■■□□ 2.79
PTPN4-207ENST00000460162 COL5A2P05997 1499 aaPredicted RBP32.48■■■□□ 2.79
PTPN4-207ENST00000460162 EVA1CP58658 441 aa32.46■■■□□ 2.79
PTPN4-207ENST00000460162 NLRP6P59044 892 aa32.45■■■□□ 2.79
PTPN4-207ENST00000460162 CPSF1Q10570 1443 aaKnown RBP32.44■■■□□ 2.78
PTPN4-207ENST00000460162 BARGINQ6ZT62 677 aa32.44■■■□□ 2.78
PTPN4-207ENST00000460162 ZNF692Q9BU19 519 aaPredicted RBP32.44■■■□□ 2.78
PTPN4-207ENST00000460162 CARD11Q9BXL7 1154 aa32.44■■■□□ 2.78
PTPN4-207ENST00000460162 SRCAPQ6ZRS2 3230 aa32.43■■■□□ 2.78
PTPN4-207ENST00000460162 BAG6P46379 1132 aa32.43■■■□□ 2.78
PTPN4-207ENST00000460162 PARP4Q9UKK3 1724 aaKnown RBP32.42■■■□□ 2.78
PTPN4-207ENST00000460162 COL18A1P39060 1754 aa32.41■■■□□ 2.78
PTPN4-207ENST00000460162 LARP1Q6PKG0 1096 aaKnown RBP32.41■■■□□ 2.78
PTPN4-207ENST00000460162 USP35Q9P2H5 1018 aa32.41■■■□□ 2.78
PTPN4-207ENST00000460162 AATKQ6ZMQ8 1374 aa32.41■■■□□ 2.78
PTPN4-207ENST00000460162 DISP2A7MBM2 1401 aa32.41■■■□□ 2.78
PTPN4-207ENST00000460162 TTC21AQ8NDW8 1320 aa32.4■■■□□ 2.78
PTPN4-207ENST00000460162 FAM182BQ5T319 152 aa32.39■■■□□ 2.78
PTPN4-207ENST00000460162 TCP11L2Q8N4U5 519 aa32.39■■■□□ 2.78
PTPN4-207ENST00000460162 TTC21BQ7Z4L5 1316 aa32.39■■■□□ 2.78
PTPN4-207ENST00000460162 USP54Q70EL1 1684 aa32.38■■■□□ 2.77
PTPN4-207ENST00000460162 CRB1P82279 1406 aa32.38■■■□□ 2.77
PTPN4-207ENST00000460162 TRIM26Q12899 539 aaPredicted RBP32.38■■■□□ 2.77
PTPN4-207ENST00000460162 THRAP3Q9Y2W1 955 aaKnown RBP32.38■■■□□ 2.77
PTPN4-207ENST00000460162 KTN1Q86UP2 1357 aaKnown RBP32.36■■■□□ 2.77
PTPN4-207ENST00000460162 WNK3Q9BYP7 1800 aa32.36■■■□□ 2.77
PTPN4-207ENST00000460162 NFAT5O94916 1531 aa32.34■■■□□ 2.77
PTPN4-207ENST00000460162 ABCC6O95255 1503 aa32.33■■■□□ 2.77
PTPN4-207ENST00000460162 FAM196AQ6ZSG2 479 aa32.33■■■□□ 2.77
PTPN4-207ENST00000460162 CD163L1Q9NR16 1453 aa32.32■■■□□ 2.76
PTPN4-207ENST00000460162 ZBTB7CA1YPR0 619 aa32.32■■■□□ 2.76
PTPN4-207ENST00000460162 KCNH5Q8NCM2 988 aa32.32■■■□□ 2.76
PTPN4-207ENST00000460162 LRRC37A3O60309 1634 aa32.31■■■□□ 2.76
PTPN4-207ENST00000460162 PDE3BQ13370 1112 aa32.29■■■□□ 2.76
PTPN4-207ENST00000460162 RGPD5Q99666 1765 aa32.29■■■□□ 2.76
PTPN4-207ENST00000460162 LRP5O75197 1615 aa32.27■■■□□ 2.76
PTPN4-207ENST00000460162 EN1Q05925 392 aaPredicted RBP32.26■■■□□ 2.75
PTPN4-207ENST00000460162 ARHGEF25Q86VW2 580 aa32.26■■■□□ 2.75
PTPN4-207ENST00000460162 WDR17Q8IZU2 1322 aa32.26■■■□□ 2.75
PTPN4-207ENST00000460162 USP31Q70CQ4 1352 aa32.25■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms