RNA–Protein interactions for RNA: ENST00000459639.5

U2AF1-204, Transcript of U2 small nuclear RNA auxiliary factor 1, human

TSL 1 (best) BASIC

Gene U2AF1, Length 1,675 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
U2AF1-204	ENST00000459639	WDR43	Q15061	677 aa	Known RBP eCLIP	32.69	■■■□□ 2.82
U2AF1-204	ENST00000459639	NME9	Q86XW9	330 aa		32.69	■■■□□ 2.82
U2AF1-204	ENST00000459639	NGDN	Q8NEJ9	315 aa	Known RBP	32.69	■■■□□ 2.82
U2AF1-204	ENST00000459639	DCC	P43146	1447 aa		32.69	■■■□□ 2.82
U2AF1-204	ENST00000459639	TMEM94	Q12767	1356 aa		32.69	■■■□□ 2.82
U2AF1-204	ENST00000459639	MTHFS	P49914	203 aa		32.68	■■■□□ 2.82
U2AF1-204	ENST00000459639	TTC21A	Q8NDW8	1320 aa		32.67	■■■□□ 2.82
U2AF1-204	ENST00000459639	XIRP1	Q702N8	1843 aa	Known RBP	32.67	■■■□□ 2.82
U2AF1-204	ENST00000459639	CFAP53	Q96M91	514 aa		32.66	■■■□□ 2.82
U2AF1-204	ENST00000459639	C19orf44	Q9H6X5	657 aa		32.66	■■■□□ 2.82
U2AF1-204	ENST00000459639	MAP2	P11137	1827 aa	Known RBP	32.65	■■■□□ 2.82
U2AF1-204	ENST00000459639	PHF8	Q9UPP1	1060 aa		32.65	■■■□□ 2.82
U2AF1-204	ENST00000459639	COG3	Q96JB2	828 aa		32.64	■■■□□ 2.82
U2AF1-204	ENST00000459639	KIF1A	Q12756	1690 aa		32.64	■■■□□ 2.82
U2AF1-204	ENST00000459639	OVOS2	A0A0J9YW53	1432 aa		32.64	■■■□□ 2.82
U2AF1-204	ENST00000459639	OVOS2	Q6IE36	1432 aa		32.64	■■■□□ 2.82
U2AF1-204	ENST00000459639	USP54	Q70EL1	1684 aa		32.63	■■■□□ 2.81
U2AF1-204	ENST00000459639	ADAMTS8	Q9UP79	889 aa		32.62	■■■□□ 2.81
U2AF1-204	ENST00000459639	AATK	Q6ZMQ8	1374 aa		32.62	■■■□□ 2.81
U2AF1-204	ENST00000459639	PIK3C2A	O00443	1686 aa		32.62	■■■□□ 2.81
U2AF1-204	ENST00000459639	COL3A1	P02461	1466 aa	Predicted RBP	32.6	■■■□□ 2.81
U2AF1-204	ENST00000459639	SMG6	Q86US8	1419 aa	Known RBP	32.6	■■■□□ 2.81
U2AF1-204	ENST00000459639	ZRANB1	Q9UGI0	708 aa		32.59	■■■□□ 2.81
U2AF1-204	ENST00000459639	DMRT2	Q9Y5R5	561 aa		32.58	■■■□□ 2.81
U2AF1-204	ENST00000459639	C1orf167	Q5SNV9	1468 aa		32.58	■■■□□ 2.81
U2AF1-204	ENST00000459639	USP31	Q70CQ4	1352 aa		32.57	■■■□□ 2.8
U2AF1-204	ENST00000459639	LRRC7	Q96NW7	1537 aa		32.57	■■■□□ 2.8
U2AF1-204	ENST00000459639	ESCO1	Q5FWF5	840 aa		32.56	■■■□□ 2.8
U2AF1-204	ENST00000459639	PNPLA6	Q8IY17	1366 aa		32.55	■■■□□ 2.8
U2AF1-204	ENST00000459639	MST1R	Q04912	1400 aa		32.55	■■■□□ 2.8
U2AF1-204	ENST00000459639	MSH6	P52701	1360 aa		32.54	■■■□□ 2.8
U2AF1-204	ENST00000459639	MARF1	Q9Y4F3	1742 aa	Known RBP	32.54	■■■□□ 2.8
U2AF1-204	ENST00000459639	ATF3	P18847	181 aa		32.53	■■■□□ 2.8
U2AF1-204	ENST00000459639	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.53	■■■□□ 2.8
U2AF1-204	ENST00000459639	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.53	■■■□□ 2.8
U2AF1-204	ENST00000459639	POLK	Q9UBT6	870 aa		32.52	■■■□□ 2.8
U2AF1-204	ENST00000459639	CADPS2	Q86UW7	1296 aa		32.5	■■■□□ 2.79
U2AF1-204	ENST00000459639	ORAI2	Q96SN7	254 aa		32.48	■■■□□ 2.79
U2AF1-204	ENST00000459639	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.46	■■■□□ 2.79
U2AF1-204	ENST00000459639	NUDC	Q9Y266	331 aa		32.45	■■■□□ 2.79
U2AF1-204	ENST00000459639	PSME1	Q06323	249 aa		32.43	■■■□□ 2.78
U2AF1-204	ENST00000459639	FBLN1	P23142	703 aa		32.43	■■■□□ 2.78
U2AF1-204	ENST00000459639	EMILIN1	Q9Y6C2	1016 aa		32.43	■■■□□ 2.78
U2AF1-204	ENST00000459639	DIAPH1	O60610	1272 aa	Known RBP	32.41	■■■□□ 2.78
U2AF1-204	ENST00000459639	PAK3	O75914	559 aa	Predicted RBP	32.4	■■■□□ 2.78
U2AF1-204	ENST00000459639	PEAK1	Q9H792	1746 aa		32.39	■■■□□ 2.78
U2AF1-204	ENST00000459639	PPM1G	O15355	546 aa	Predicted RBP	32.39	■■■□□ 2.78
U2AF1-204	ENST00000459639	NLRP6	P59044	892 aa		32.39	■■■□□ 2.78
U2AF1-204	ENST00000459639	ABTB2	Q8N961	1025 aa		32.39	■■■□□ 2.78
U2AF1-204	ENST00000459639	SENP3-EIF4A1	A0A087X0R7	540 aa		32.38	■■■□□ 2.77
U2AF1-204	ENST00000459639	RRS1	Q15050	365 aa	Known RBP	32.38	■■■□□ 2.77
U2AF1-204	ENST00000459639	CCDC146	Q8IYE0	955 aa		32.38	■■■□□ 2.77
U2AF1-204	ENST00000459639	FOXO3	O43524	673 aa		32.37	■■■□□ 2.77
U2AF1-204	ENST00000459639	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.37	■■■□□ 2.77
U2AF1-204	ENST00000459639	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.37	■■■□□ 2.77
U2AF1-204	ENST00000459639	IQSEC2	Q5JU85	1478 aa		32.36	■■■□□ 2.77
U2AF1-204	ENST00000459639	PDE3B	Q13370	1112 aa		32.35	■■■□□ 2.77
U2AF1-204	ENST00000459639	NGEF	Q8N5V2	710 aa		32.35	■■■□□ 2.77
U2AF1-204	ENST00000459639	RUNDC1	Q96C34	613 aa		32.34	■■■□□ 2.77
U2AF1-204	ENST00000459639	ALS2	Q96Q42	1657 aa		32.34	■■■□□ 2.77
U2AF1-204	ENST00000459639	U2SURP	O15042	1029 aa	Known RBP	32.33	■■■□□ 2.77
U2AF1-204	ENST00000459639	SALL2	Q9Y467	1007 aa	Predicted RBP	32.32	■■■□□ 2.76
U2AF1-204	ENST00000459639	APAF1	O14727	1248 aa		32.31	■■■□□ 2.76
U2AF1-204	ENST00000459639	KRT28	Q7Z3Y7	464 aa		32.31	■■■□□ 2.76
U2AF1-204	ENST00000459639	SBNO1	A3KN83	1393 aa		32.3	■■■□□ 2.76
U2AF1-204	ENST00000459639	KIF24	Q5T7B8	1368 aa		32.3	■■■□□ 2.76
U2AF1-204	ENST00000459639	NUTM2G	Q5VZR2	741 aa		32.29	■■■□□ 2.76
U2AF1-204	ENST00000459639	GTF3C3	Q9Y5Q9	886 aa		32.29	■■■□□ 2.76
U2AF1-204	ENST00000459639	MAP3K19	Q56UN5	1328 aa		32.29	■■■□□ 2.76
U2AF1-204	ENST00000459639	LTN1	O94822	1766 aa		32.29	■■■□□ 2.76
U2AF1-204	ENST00000459639	NFAT5	O94916	1531 aa		32.29	■■■□□ 2.76
U2AF1-204	ENST00000459639	IL13	P35225	146 aa		32.28	■■■□□ 2.76
U2AF1-204	ENST00000459639	NPHP3	Q7Z494	1330 aa		32.28	■■■□□ 2.76
U2AF1-204	ENST00000459639	SLIT3	O75094	1523 aa		32.28	■■■□□ 2.76
U2AF1-204	ENST00000459639	ZNF521	Q96K83	1311 aa		32.27	■■■□□ 2.76
U2AF1-204	ENST00000459639	FLT4	P35916	1363 aa		32.27	■■■□□ 2.76
U2AF1-204	ENST00000459639	XPC	Q01831	940 aa	Predicted RBP	32.27	■■■□□ 2.76
U2AF1-204	ENST00000459639	SOX12	O15370	315 aa		32.26	■■■□□ 2.75
U2AF1-204	ENST00000459639	PNN	Q9H307	717 aa	Known RBP	32.26	■■■□□ 2.75
U2AF1-204	ENST00000459639	PHRF1	Q9P1Y6	1649 aa	Known RBP	32.25	■■■□□ 2.75
U2AF1-204	ENST00000459639	RGPD1	P0DJD0	1748 aa		32.24	■■■□□ 2.75
U2AF1-204	ENST00000459639	PXDN	Q92626	1479 aa		32.24	■■■□□ 2.75
U2AF1-204	ENST00000459639	LTBP4	Q8N2S1	1624 aa		32.23	■■■□□ 2.75
U2AF1-204	ENST00000459639	NCBP3	Q53F19	620 aa	Known RBP	32.23	■■■□□ 2.75
U2AF1-204	ENST00000459639	RTL1	A6NKG5	1358 aa		32.22	■■■□□ 2.75
U2AF1-204	ENST00000459639	FCHSD2	O94868	740 aa		32.22	■■■□□ 2.75
U2AF1-204	ENST00000459639	PLEKHF1	Q96S99	279 aa		32.22	■■■□□ 2.75
U2AF1-204	ENST00000459639	TCP11L2	Q8N4U5	519 aa		32.21	■■■□□ 2.75
U2AF1-204	ENST00000459639	KCNH5	Q8NCM2	988 aa		32.21	■■■□□ 2.75
U2AF1-204	ENST00000459639	USP19	O94966	1318 aa		32.21	■■■□□ 2.75
U2AF1-204	ENST00000459639	BRINP3	Q76B58	766 aa		32.21	■■■□□ 2.75
U2AF1-204	ENST00000459639	SLAIN2	Q9P270	581 aa		32.21	■■■□□ 2.75
U2AF1-204	ENST00000459639	EIF4A2	Q14240	407 aa	Known RBP	32.19	■■■□□ 2.74
U2AF1-204	ENST00000459639	AMPH	P49418	695 aa		32.18	■■■□□ 2.74
U2AF1-204	ENST00000459639	RSPH6A	Q9H0K4	717 aa		32.18	■■■□□ 2.74
U2AF1-204	ENST00000459639	TNS3	Q68CZ2	1445 aa		32.18	■■■□□ 2.74
U2AF1-204	ENST00000459639	MAPK8IP3	Q9UPT6	1336 aa		32.18	■■■□□ 2.74
U2AF1-204	ENST00000459639	HSP90AB2P	Q58FF8	381 aa		32.18	■■■□□ 2.74
U2AF1-204	ENST00000459639	NHSL1	Q5SYE7	1610 aa		32.16	■■■□□ 2.74
U2AF1-204	ENST00000459639	GOLGA2	Q08379	1002 aa		32.15	■■■□□ 2.74

Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms