RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 CLUAP1Q96AJ1 413 aa14.08□□□□□ -0.16
RFX3-211ENST00000458034 U2AF1L5P0DN76 240 aaPredicted RBP14.07□□□□□ -0.16
RFX3-211ENST00000458034 U2AF1Q01081 240 aaKnown RBP eCLIP14.07□□□□□ -0.16
RFX3-211ENST00000458034 USP35Q9P2H5 1018 aa14.07□□□□□ -0.16
RFX3-211ENST00000458034 DAXXQ9UER7 740 aaPredicted RBP14.07□□□□□ -0.16
RFX3-211ENST00000458034 SPATA31D1Q6ZQQ2 1576 aa14.07□□□□□ -0.16
RFX3-211ENST00000458034 COL3A1P02461 1466 aaPredicted RBP14.06□□□□□ -0.16
RFX3-211ENST00000458034 TSPOAP1O95153 1857 aa14.06□□□□□ -0.16
RFX3-211ENST00000458034 DEKP35659 375 aaKnown RBP14.06□□□□□ -0.16
RFX3-211ENST00000458034 RARSP54136 660 aaKnown RBP14.06□□□□□ -0.16
RFX3-211ENST00000458034 STK26Q9P289 416 aa14.06□□□□□ -0.16
RFX3-211ENST00000458034 STAG3Q9UJ98 1225 aa14.06□□□□□ -0.16
RFX3-211ENST00000458034 ZMYM3Q14202 1370 aa14.06□□□□□ -0.16
RFX3-211ENST00000458034 NEUROD2Q15784 382 aa14.05□□□□□ -0.16
RFX3-211ENST00000458034 PIP4P2Q8N4L2 257 aa14.05□□□□□ -0.16
RFX3-211ENST00000458034 RRP7AQ9Y3A4 280 aaKnown RBP14.05□□□□□ -0.16
RFX3-211ENST00000458034 ATP7BP35670 1465 aa14.05□□□□□ -0.16
RFX3-211ENST00000458034 CDC42BPGQ6DT37 1551 aa14.05□□□□□ -0.16
RFX3-211ENST00000458034 SETD1AO15047 1707 aaKnown RBP14.04□□□□□ -0.16
RFX3-211ENST00000458034 PRAM1Q96QH2 718 aa14.04□□□□□ -0.16
RFX3-211ENST00000458034 IL16Q14005 1332 aa14.04□□□□□ -0.16
RFX3-211ENST00000458034 RIMBP3CA6NJZ7 1639 aa14.04□□□□□ -0.16
RFX3-211ENST00000458034 RIMBP3BA6NNM3 1639 aa14.04□□□□□ -0.16
RFX3-211ENST00000458034 RIMBP3Q9UFD9 1639 aa14.04□□□□□ -0.16
RFX3-211ENST00000458034 RGS3P49796 1198 aa14.03□□□□□ -0.16
RFX3-211ENST00000458034 SAFB2Q14151 953 aaKnown RBP eCLIP14.03□□□□□ -0.16
RFX3-211ENST00000458034 C8orf34Q49A92 452 aa14.03□□□□□ -0.16
RFX3-211ENST00000458034 REM2Q8IYK8 340 aaPredicted RBP14.03□□□□□ -0.16
RFX3-211ENST00000458034 FRAT1Q92837 279 aaPredicted RBP14.03□□□□□ -0.16
RFX3-211ENST00000458034 COG6Q9Y2V7 657 aa14.03□□□□□ -0.16
RFX3-211ENST00000458034 MINK1Q8N4C8 1332 aaPredicted RBP14.03□□□□□ -0.16
RFX3-211ENST00000458034 ARHGEF40Q8TER5 1519 aa14.03□□□□□ -0.16
RFX3-211ENST00000458034 KNDC1Q76NI1 1749 aa14.03□□□□□ -0.16
RFX3-211ENST00000458034 CD163L1Q9NR16 1453 aa14.02□□□□□ -0.16
RFX3-211ENST00000458034 PANK1Q8TE04 598 aa14.02□□□□□ -0.17
RFX3-211ENST00000458034 NLRP1Q9C000 1473 aa14.01□□□□□ -0.17
RFX3-211ENST00000458034 RIMS2Q9UQ26 1411 aa14.01□□□□□ -0.17
RFX3-211ENST00000458034 A2ML1A8K2U0 1454 aa14□□□□□ -0.17
RFX3-211ENST00000458034 U2SURPO15042 1029 aaKnown RBP14□□□□□ -0.17
RFX3-211ENST00000458034 NEFMP07197 916 aa14□□□□□ -0.17
RFX3-211ENST00000458034 FAM69CQ0P6D2 419 aa14□□□□□ -0.17
RFX3-211ENST00000458034 ZKSCAN2Q63HK3 967 aa14□□□□□ -0.17
RFX3-211ENST00000458034 SKAP1Q86WV1 359 aa14□□□□□ -0.17
RFX3-211ENST00000458034 CDK19Q9BWU1 502 aa14□□□□□ -0.17
RFX3-211ENST00000458034 GGNBP2Q9H3C7 697 aa14□□□□□ -0.17
RFX3-211ENST00000458034 RWDD1Q9H446 243 aaPredicted RBP14□□□□□ -0.17
RFX3-211ENST00000458034 FYB1O15117 783 aa13.99□□□□□ -0.17
RFX3-211ENST00000458034 DIAPH1O60610 1272 aaKnown RBP13.99□□□□□ -0.17
RFX3-211ENST00000458034 IGHDP01880 384 aa13.99□□□□□ -0.17
RFX3-211ENST00000458034 TMPOP42166 694 aaKnown RBP13.99□□□□□ -0.17
RFX3-211ENST00000458034 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.99□□□□□ -0.17
RFX3-211ENST00000458034 FTSJ3Q8IY81 847 aaKnown RBP13.98□□□□□ -0.17
RFX3-211ENST00000458034 PLEKHF1Q96S99 279 aa13.98□□□□□ -0.17
RFX3-211ENST00000458034 BCL11AQ9H165 835 aa13.98□□□□□ -0.17
RFX3-211ENST00000458034 ZBTB12Q9Y330 459 aaPredicted RBP13.98□□□□□ -0.17
RFX3-211ENST00000458034 ITSN1Q15811 1721 aa13.98□□□□□ -0.17
RFX3-211ENST00000458034 PNPLA6Q8IY17 1366 aa13.97□□□□□ -0.17
RFX3-211ENST00000458034 MVPQ14764 893 aaKnown RBP13.97□□□□□ -0.17
RFX3-211ENST00000458034 FBXO31Q5XUX0 539 aaPredicted RBP13.97□□□□□ -0.17
RFX3-211ENST00000458034 CYB5RLQ6IPT4 315 aa13.97□□□□□ -0.17
RFX3-211ENST00000458034 ATF5Q9Y2D1 282 aaPredicted RBP13.97□□□□□ -0.17
RFX3-211ENST00000458034 MAP2P11137 1827 aaKnown RBP13.97□□□□□ -0.17
RFX3-211ENST00000458034 HDGFP51858 240 aaKnown RBP13.96□□□□□ -0.17
RFX3-211ENST00000458034 DZIP1LQ8IYY4 767 aaKnown RBP13.96□□□□□ -0.17
RFX3-211ENST00000458034 LAS1LQ9Y4W2 734 aaKnown RBP13.96□□□□□ -0.17
RFX3-211ENST00000458034 MON2Q7Z3U7 1717 aa13.95□□□□□ -0.18
RFX3-211ENST00000458034 NRXN3Q9Y4C0 1643 aa13.95□□□□□ -0.18
RFX3-211ENST00000458034 CALD1Q05682 793 aaKnown RBP13.95□□□□□ -0.18
RFX3-211ENST00000458034 UPF2Q9HAU5 1272 aaKnown RBP13.95□□□□□ -0.18
RFX3-211ENST00000458034 SMC4Q9NTJ3 1288 aa13.95□□□□□ -0.18
RFX3-211ENST00000458034 AKAP12Q02952 1782 aa13.95□□□□□ -0.18
RFX3-211ENST00000458034 EDC4Q6P2E9 1401 aaKnown RBP13.95□□□□□ -0.18
RFX3-211ENST00000458034 LRRC7Q96NW7 1537 aa13.95□□□□□ -0.18
RFX3-211ENST00000458034 KIF16BQ96L93 1317 aa13.94□□□□□ -0.18
RFX3-211ENST00000458034 IPO8O15397 1037 aaKnown RBP13.94□□□□□ -0.18
RFX3-211ENST00000458034 FCHSD2O94868 740 aa13.94□□□□□ -0.18
RFX3-211ENST00000458034 BECN1Q14457 450 aa13.94□□□□□ -0.18
RFX3-211ENST00000458034 ZNF428Q96B54 188 aa13.94□□□□□ -0.18
RFX3-211ENST00000458034 DDX19BQ9UMR2 479 aa13.94□□□□□ -0.18
RFX3-211ENST00000458034 FAM135BQ49AJ0 1406 aa13.93□□□□□ -0.18
RFX3-211ENST00000458034 HAX1O00165 279 aa13.93□□□□□ -0.18
RFX3-211ENST00000458034 RIPK4P57078 832 aa13.93□□□□□ -0.18
RFX3-211ENST00000458034 CABP1Q9NZU7 370 aa13.93□□□□□ -0.18
RFX3-211ENST00000458034 TRIM35Q9UPQ4 493 aa13.93□□□□□ -0.18
RFX3-211ENST00000458034 CPS1P31327 1500 aa13.93□□□□□ -0.18
RFX3-211ENST00000458034 CDK12Q9NYV4 1490 aaPredicted RBP13.93□□□□□ -0.18
RFX3-211ENST00000458034 RLBP1P12271 317 aa13.92□□□□□ -0.18
RFX3-211ENST00000458034 EXOSC9Q06265 439 aaKnown RBP13.92□□□□□ -0.18
RFX3-211ENST00000458034 ALDH1L2Q3SY69 923 aa13.92□□□□□ -0.18
RFX3-211ENST00000458034 SIRT1Q96EB6 747 aa13.92□□□□□ -0.18
RFX3-211ENST00000458034 BCL2L13Q9BXK5 485 aa13.92□□□□□ -0.18
RFX3-211ENST00000458034 CHMP4BQ9H444 224 aaKnown RBP13.92□□□□□ -0.18
RFX3-211ENST00000458034 ESF1Q9H501 851 aaKnown RBP13.92□□□□□ -0.18
RFX3-211ENST00000458034 PDZRN3Q9UPQ7 1066 aa13.91□□□□□ -0.18
RFX3-211ENST00000458034 PCDHB15Q9Y5E8 787 aa13.91□□□□□ -0.18
RFX3-211ENST00000458034 TECPR2O15040 1411 aa13.9□□□□□ -0.18
RFX3-211ENST00000458034 PPIP5K1Q6PFW1 1433 aa13.9□□□□□ -0.18
RFX3-211ENST00000458034 ATF7IPQ6VMQ6 1270 aa13.9□□□□□ -0.18
RFX3-211ENST00000458034 TSR2Q969E8 191 aaKnown RBP13.9□□□□□ -0.18
RFX3-211ENST00000458034 AATKQ6ZMQ8 1374 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms