RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-208ENST00000457745 NPC1L1Q9UHC9 1359 aa11.95□□□□□ -0.5
RIF1-208ENST00000457745 MARF1Q9Y4F3 1742 aaKnown RBP11.95□□□□□ -0.5
RIF1-208ENST00000457745 ZNF335Q9H4Z2 1342 aaPredicted RBP11.95□□□□□ -0.5
RIF1-208ENST00000457745 PPP2R1AP30153 589 aa11.94□□□□□ -0.5
RIF1-208ENST00000457745 KNSTRNQ9Y448 316 aa11.94□□□□□ -0.5
RIF1-208ENST00000457745 TMEM94Q12767 1356 aa11.93□□□□□ -0.5
RIF1-208ENST00000457745 NINLQ9Y2I6 1382 aa11.93□□□□□ -0.5
RIF1-208ENST00000457745 MYBBP1AQ9BQG0 1328 aaKnown RBP11.93□□□□□ -0.5
RIF1-208ENST00000457745 SENP3-EIF4A1A0A087X0R7 540 aa11.93□□□□□ -0.5
RIF1-208ENST00000457745 MRS2Q9HD23 443 aa11.93□□□□□ -0.5
RIF1-208ENST00000457745 SSH2Q76I76 1423 aa11.93□□□□□ -0.5
RIF1-208ENST00000457745 LRRC7Q96NW7 1537 aa11.92□□□□□ -0.5
RIF1-208ENST00000457745 SHPRHQ149N8 1683 aa11.92□□□□□ -0.5
RIF1-208ENST00000457745 SLC24A1O60721 1099 aa11.92□□□□□ -0.5
RIF1-208ENST00000457745 FBLN1P23142 703 aa11.92□□□□□ -0.5
RIF1-208ENST00000457745 RALBP1Q15311 655 aa11.92□□□□□ -0.5
RIF1-208ENST00000457745 PMFBP1Q8TBY8 1022 aa11.92□□□□□ -0.5
RIF1-208ENST00000457745 GGNBP2Q9H3C7 697 aa11.92□□□□□ -0.5
RIF1-208ENST00000457745 ACEP12821 1306 aa11.91□□□□□ -0.5
RIF1-208ENST00000457745 PIK3C2AO00443 1686 aa11.91□□□□□ -0.5
RIF1-208ENST00000457745 FYB1O15117 783 aa11.91□□□□□ -0.5
RIF1-208ENST00000457745 PROSER2Q86WR7 435 aaPredicted RBP11.91□□□□□ -0.5
RIF1-208ENST00000457745 NME9Q86XW9 330 aa11.91□□□□□ -0.5
RIF1-208ENST00000457745 CCDC61Q9Y6R9 512 aa11.91□□□□□ -0.5
RIF1-208ENST00000457745 ANKARQ7Z5J8 1434 aa11.91□□□□□ -0.5
RIF1-208ENST00000457745 PLEKHG3A1L390 1219 aa11.9□□□□□ -0.5
RIF1-208ENST00000457745 USP6P35125 1406 aa11.9□□□□□ -0.5
RIF1-208ENST00000457745 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.9□□□□□ -0.5
RIF1-208ENST00000457745 POLR3AO14802 1390 aaPredicted RBP11.9□□□□□ -0.5
RIF1-208ENST00000457745 MST1RQ04912 1400 aa11.89□□□□□ -0.51
RIF1-208ENST00000457745 EDC4Q6P2E9 1401 aaKnown RBP11.89□□□□□ -0.51
RIF1-208ENST00000457745 TNNT2P45379 298 aaPredicted RBP11.89□□□□□ -0.51
RIF1-208ENST00000457745 PNISRQ8TF01 805 aaKnown RBP11.89□□□□□ -0.51
RIF1-208ENST00000457745 AKT1S1Q96B36 256 aa11.89□□□□□ -0.51
RIF1-208ENST00000457745 BRD4O60885 1362 aaPredicted RBP11.89□□□□□ -0.51
RIF1-208ENST00000457745 ORAI2Q96SN7 254 aa11.88□□□□□ -0.51
RIF1-208ENST00000457745 COL3A1P02461 1466 aaPredicted RBP11.88□□□□□ -0.51
RIF1-208ENST00000457745 C1orf167Q5SNV9 1468 aa11.88□□□□□ -0.51
RIF1-208ENST00000457745 PEAK1Q9H792 1746 aa11.87□□□□□ -0.51
RIF1-208ENST00000457745 TRPM3Q9HCF6 1732 aaPredicted RBP11.87□□□□□ -0.51
RIF1-208ENST00000457745 HDGFL2Q7Z4V5 671 aaPredicted RBP11.87□□□□□ -0.51
RIF1-208ENST00000457745 NLRP13Q86W25 1043 aa11.87□□□□□ -0.51
RIF1-208ENST00000457745 FAM9BQ8IZU0 186 aa11.87□□□□□ -0.51
RIF1-208ENST00000457745 TERF2IPQ9NYB0 399 aa11.87□□□□□ -0.51
RIF1-208ENST00000457745 CGNL1Q0VF96 1302 aa11.86□□□□□ -0.51
RIF1-208ENST00000457745 TTC21BQ7Z4L5 1316 aa11.86□□□□□ -0.51
RIF1-208ENST00000457745 OVOS2A0A0J9YW53 1432 aa11.86□□□□□ -0.51
RIF1-208ENST00000457745 OVOS2Q6IE36 1432 aa11.86□□□□□ -0.51
RIF1-208ENST00000457745 LTBP4Q8N2S1 1624 aa11.86□□□□□ -0.51
RIF1-208ENST00000457745 MORC1Q86VD1 984 aa11.86□□□□□ -0.51
RIF1-208ENST00000457745 USP54Q70EL1 1684 aa11.85□□□□□ -0.51
RIF1-208ENST00000457745 NSD2O96028 1365 aa11.85□□□□□ -0.51
RIF1-208ENST00000457745 SPDYE2BA6NHP3 402 aa11.85□□□□□ -0.51
RIF1-208ENST00000457745 SPDYE6P0CI01 402 aa11.85□□□□□ -0.51
RIF1-208ENST00000457745 SPDYE2Q495Y8 402 aa11.85□□□□□ -0.51
RIF1-208ENST00000457745 DDX17Q92841 729 aaKnown RBP11.85□□□□□ -0.51
RIF1-208ENST00000457745 XPCQ01831 940 aaPredicted RBP11.84□□□□□ -0.51
RIF1-208ENST00000457745 C14orf37Q86TY3 774 aa11.84□□□□□ -0.51
RIF1-208ENST00000457745 ZNF692Q9BU19 519 aaPredicted RBP11.84□□□□□ -0.51
RIF1-208ENST00000457745 PHF8Q9UPP1 1060 aa11.84□□□□□ -0.51
RIF1-208ENST00000457745 MAP2P11137 1827 aaKnown RBP11.83□□□□□ -0.51
RIF1-208ENST00000457745 HAX1O00165 279 aa11.83□□□□□ -0.52
RIF1-208ENST00000457745 PIP4P2Q8N4L2 257 aa11.83□□□□□ -0.52
RIF1-208ENST00000457745 KIF1AQ12756 1690 aa11.82□□□□□ -0.52
RIF1-208ENST00000457745 REM2Q8IYK8 340 aaPredicted RBP11.82□□□□□ -0.52
RIF1-208ENST00000457745 BLMP54132 1417 aaPredicted RBP11.82□□□□□ -0.52
RIF1-208ENST00000457745 DCCP43146 1447 aa11.81□□□□□ -0.52
RIF1-208ENST00000457745 NCOA3Q9Y6Q9 1424 aa11.81□□□□□ -0.52
RIF1-208ENST00000457745 MTHFSP49914 203 aa11.81□□□□□ -0.52
RIF1-208ENST00000457745 ESCO1Q5FWF5 840 aa11.81□□□□□ -0.52
RIF1-208ENST00000457745 C19orf44Q9H6X5 657 aa11.81□□□□□ -0.52
RIF1-208ENST00000457745 ALS2Q96Q42 1657 aa11.81□□□□□ -0.52
RIF1-208ENST00000457745 SMG6Q86US8 1419 aaKnown RBP11.8□□□□□ -0.52
RIF1-208ENST00000457745 NUTM2GQ5VZR2 741 aa11.8□□□□□ -0.52
RIF1-208ENST00000457745 NGDNQ8NEJ9 315 aaKnown RBP11.8□□□□□ -0.52
RIF1-208ENST00000457745 EMILIN1Q9Y6C2 1016 aa11.8□□□□□ -0.52
RIF1-208ENST00000457745 POLKQ9UBT6 870 aa11.79□□□□□ -0.52
RIF1-208ENST00000457745 ADAMTS8Q9UP79 889 aa11.79□□□□□ -0.52
RIF1-208ENST00000457745 USP31Q70CQ4 1352 aa11.79□□□□□ -0.52
RIF1-208ENST00000457745 PXDNQ92626 1479 aa11.78□□□□□ -0.52
RIF1-208ENST00000457745 CRYBG1Q9Y4K1 1723 aa11.78□□□□□ -0.52
RIF1-208ENST00000457745 FOXO3O43524 673 aa11.78□□□□□ -0.52
RIF1-208ENST00000457745 HNRNPUQ00839 825 aaKnown RBP eCLIP11.78□□□□□ -0.52
RIF1-208ENST00000457745 RRS1Q15050 365 aaKnown RBP11.78□□□□□ -0.52
RIF1-208ENST00000457745 MED1Q15648 1581 aaPredicted RBP11.78□□□□□ -0.52
RIF1-208ENST00000457745 MSH6P52701 1360 aa11.78□□□□□ -0.52
RIF1-208ENST00000457745 NFAT5O94916 1531 aa11.77□□□□□ -0.52
RIF1-208ENST00000457745 SOX12O15370 315 aa11.76□□□□□ -0.53
RIF1-208ENST00000457745 CCDC146Q8IYE0 955 aa11.76□□□□□ -0.53
RIF1-208ENST00000457745 PNPLA6Q8IY17 1366 aa11.76□□□□□ -0.53
RIF1-208ENST00000457745 IQSEC2Q5JU85 1478 aa11.76□□□□□ -0.53
RIF1-208ENST00000457745 CDK12Q9NYV4 1490 aaPredicted RBP11.76□□□□□ -0.53
RIF1-208ENST00000457745 LTN1O94822 1766 aa11.75□□□□□ -0.53
RIF1-208ENST00000457745 ATF3P18847 181 aa11.75□□□□□ -0.53
RIF1-208ENST00000457745 BRINP3Q76B58 766 aa11.75□□□□□ -0.53
RIF1-208ENST00000457745 TTC21AQ8NDW8 1320 aa11.75□□□□□ -0.53
RIF1-208ENST00000457745 AATKQ6ZMQ8 1374 aa11.75□□□□□ -0.53
RIF1-208ENST00000457745 SLIT3O75094 1523 aa11.75□□□□□ -0.53
RIF1-208ENST00000457745 NHSL1Q5SYE7 1610 aa11.75□□□□□ -0.53
RIF1-208ENST00000457745 RGPD1P0DJD0 1748 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms