RNA–Protein interactions for RNA: ENST00000455554.2

LINC02540-201, Transcript of long intergenic non-protein coding RNA 2540, humanhuman

TSL 3 BASIC

Gene LINC02540, Length 570 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02540-201ENST00000455554 KCNH2Q12809 1159 aa6.62□□□□□ -1.35
LINC02540-201ENST00000455554 ZNF511Q8NB15 262 aa6.62□□□□□ -1.35
LINC02540-201ENST00000455554 VARSP26640 1264 aaKnown RBP6.61□□□□□ -1.35
LINC02540-201ENST00000455554 PRR7Q8TB68 274 aa6.61□□□□□ -1.35
LINC02540-201ENST00000455554 ZFAND3Q9H8U3 227 aa6.61□□□□□ -1.35
LINC02540-201ENST00000455554 NR3C2P08235 984 aa6.6□□□□□ -1.35
LINC02540-201ENST00000455554 SSTR3P32745 418 aaPredicted RBP6.6□□□□□ -1.35
LINC02540-201ENST00000455554 WDR4P57081 412 aaKnown RBP6.6□□□□□ -1.35
LINC02540-201ENST00000455554 SCARF1Q14162 830 aa6.6□□□□□ -1.35
LINC02540-201ENST00000455554 MPNDQ8N594 471 aa6.6□□□□□ -1.35
LINC02540-201ENST00000455554 FOXJ1Q92949 421 aa6.6□□□□□ -1.35
LINC02540-201ENST00000455554 C4orf48Q5BLP8 95 aa6.59□□□□□ -1.35
LINC02540-201ENST00000455554 DESI1Q6ICB0 168 aa6.59□□□□□ -1.35
LINC02540-201ENST00000455554 SPDYE5A6NIY4 337 aa6.58□□□□□ -1.36
LINC02540-201ENST00000455554 ADH1CP00326 375 aa6.58□□□□□ -1.36
LINC02540-201ENST00000455554 VSIG8P0DPA2 414 aa6.58□□□□□ -1.36
LINC02540-201ENST00000455554 MTMR2Q13614 643 aa6.58□□□□□ -1.36
LINC02540-201ENST00000455554 ITPKCQ96DU7 683 aa6.58□□□□□ -1.36
LINC02540-201ENST00000455554 CFAP99D6REC4 459 aa6.57□□□□□ -1.36
LINC02540-201ENST00000455554 KRT76Q01546 638 aa6.57□□□□□ -1.36
LINC02540-201ENST00000455554 SUZ12Q15022 739 aaKnown RBP6.57□□□□□ -1.36
LINC02540-201ENST00000455554 C6orf118Q5T5N4 469 aa6.57□□□□□ -1.36
LINC02540-201ENST00000455554 MAP10Q9P2G4 905 aa6.57□□□□□ -1.36
LINC02540-201ENST00000455554 PCDHB15Q9Y5E8 787 aa6.57□□□□□ -1.36
LINC02540-201ENST00000455554 TTLL12Q14166 644 aaPredicted RBP6.56□□□□□ -1.36
LINC02540-201ENST00000455554 GPR161Q8N6U8 529 aaKnown RBP6.56□□□□□ -1.36
LINC02540-201ENST00000455554 FAM174AQ8TBP5 190 aa6.56□□□□□ -1.36
LINC02540-201ENST00000455554 PPFIA3O75145 1194 aa6.55□□□□□ -1.36
LINC02540-201ENST00000455554 ZIC2O95409 532 aaPredicted RBP6.55□□□□□ -1.36
LINC02540-201ENST00000455554 CTHP32929 405 aa6.55□□□□□ -1.36
LINC02540-201ENST00000455554 KCTD17Q8N5Z5 321 aa6.55□□□□□ -1.36
LINC02540-201ENST00000455554 F12P00748 615 aaPredicted RBP6.54□□□□□ -1.36
LINC02540-201ENST00000455554 GRM5P41594 1212 aa6.54□□□□□ -1.36
LINC02540-201ENST00000455554 ARID5BQ14865 1188 aa6.54□□□□□ -1.36
LINC02540-201ENST00000455554 LYPD8Q6UX82 237 aa6.54□□□□□ -1.36
LINC02540-201ENST00000455554 CDK15Q96Q40 435 aa6.54□□□□□ -1.36
LINC02540-201ENST00000455554 PER1O15534 1290 aaPredicted RBP6.53□□□□□ -1.36
LINC02540-201ENST00000455554 GJA5P36382 358 aa6.53□□□□□ -1.36
LINC02540-201ENST00000455554 DNMT3LQ9UJW3 386 aa6.53□□□□□ -1.36
LINC02540-201ENST00000455554 MAN1A2O60476 641 aa6.52□□□□□ -1.37
LINC02540-201ENST00000455554 AMHR2Q16671 573 aa6.52□□□□□ -1.37
LINC02540-201ENST00000455554 GIGYF2Q6Y7W6 1299 aaKnown RBP6.52□□□□□ -1.37
LINC02540-201ENST00000455554 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.52□□□□□ -1.37
LINC02540-201ENST00000455554 CABLES1Q8TDN4 633 aa6.52□□□□□ -1.37
LINC02540-201ENST00000455554 BEGAINQ9BUH8 593 aa6.52□□□□□ -1.37
LINC02540-201ENST00000455554 NR5A1Q13285 461 aa6.51□□□□□ -1.37
LINC02540-201ENST00000455554 DIXDC1Q155Q3 683 aa6.51□□□□□ -1.37
LINC02540-201ENST00000455554 RSBN1LQ6PCB5 846 aaPredicted RBP6.51□□□□□ -1.37
LINC02540-201ENST00000455554 TBC1D2Q9BYX2 928 aa6.51□□□□□ -1.37
LINC02540-201ENST00000455554 HRCP23327 699 aa6.5□□□□□ -1.37
LINC02540-201ENST00000455554 KCNMA1Q12791 1236 aa6.5□□□□□ -1.37
LINC02540-201ENST00000455554 BARGINQ6ZT62 677 aa6.5□□□□□ -1.37
LINC02540-201ENST00000455554 VSIG10Q8N0Z9 540 aa6.5□□□□□ -1.37
LINC02540-201ENST00000455554 LINC00528Q8N1L1 170 aa6.5□□□□□ -1.37
LINC02540-201ENST00000455554 SOS2Q07890 1332 aaPredicted RBP6.5□□□□□ -1.37
LINC02540-201ENST00000455554 UPP2O95045 317 aa6.49□□□□□ -1.37
LINC02540-201ENST00000455554 BMP2P12643 396 aa6.49□□□□□ -1.37
LINC02540-201ENST00000455554 AGERQ15109 404 aa6.49□□□□□ -1.37
LINC02540-201ENST00000455554 MEIOBQ8N635 442 aa6.49□□□□□ -1.37
LINC02540-201ENST00000455554 ZBTB3Q9H5J0 574 aa6.49□□□□□ -1.37
LINC02540-201ENST00000455554 SPTLC1O15269 473 aa6.48□□□□□ -1.37
LINC02540-201ENST00000455554 RNFT1Q5M7Z0 435 aa6.48□□□□□ -1.37
LINC02540-201ENST00000455554 BPHLQ86WA6 291 aaPredicted RBP6.48□□□□□ -1.37
LINC02540-201ENST00000455554 CNTNAP3BQ96NU0 1288 aa6.48□□□□□ -1.37
LINC02540-201ENST00000455554 CNTNAP3Q9BZ76 1288 aa6.48□□□□□ -1.37
LINC02540-201ENST00000455554 CSPP1Q1MSJ5 1256 aa6.47□□□□□ -1.37
LINC02540-201ENST00000455554 WHAMMQ8TF30 809 aa6.47□□□□□ -1.37
LINC02540-201ENST00000455554 ZMYND10O75800 440 aa6.46□□□□□ -1.38
LINC02540-201ENST00000455554 FSHRP23945 695 aa6.46□□□□□ -1.38
LINC02540-201ENST00000455554 PRPF38BQ5VTL8 546 aaKnown RBP6.46□□□□□ -1.38
LINC02540-201ENST00000455554 PARP9Q8IXQ6 854 aa6.46□□□□□ -1.38
LINC02540-201ENST00000455554 C1QTNF2Q9BXJ5 285 aa6.46□□□□□ -1.38
LINC02540-201ENST00000455554 FIGNL2A6NMB9 653 aa6.45□□□□□ -1.38
LINC02540-201ENST00000455554 RASSF7Q02833 373 aa6.45□□□□□ -1.38
LINC02540-201ENST00000455554 QPCTQ16769 361 aa6.45□□□□□ -1.38
LINC02540-201ENST00000455554 RIC3Q7Z5B4 369 aa6.45□□□□□ -1.38
LINC02540-201ENST00000455554 SH3RF1Q7Z6J0 888 aa6.45□□□□□ -1.38
LINC02540-201ENST00000455554 LIMD1Q9UGP4 676 aa6.45□□□□□ -1.38
LINC02540-201ENST00000455554 ADAMTS8Q9UP79 889 aa6.45□□□□□ -1.38
LINC02540-201ENST00000455554 PTSQ03393 145 aa6.44□□□□□ -1.38
LINC02540-201ENST00000455554 CBLBQ13191 982 aa6.44□□□□□ -1.38
LINC02540-201ENST00000455554 ZNF385CQ66K41 422 aaPredicted RBP6.44□□□□□ -1.38
LINC02540-201ENST00000455554 ARMC2Q8NEN0 867 aa6.44□□□□□ -1.38
LINC02540-201ENST00000455554 COL25A1Q9BXS0 654 aaPredicted RBP6.44□□□□□ -1.38
LINC02540-201ENST00000455554 TSC1Q92574 1164 aa6.43□□□□□ -1.38
LINC02540-201ENST00000455554 TSEN34Q9BSV6 310 aaKnown RBP6.43□□□□□ -1.38
LINC02540-201ENST00000455554 MAP4K5Q9Y4K4 846 aa6.43□□□□□ -1.38
LINC02540-201ENST00000455554 GDF11O95390 407 aa6.42□□□□□ -1.38
LINC02540-201ENST00000455554 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.42□□□□□ -1.38
LINC02540-201ENST00000455554 NBPF14Q5TI25 921 aa6.42□□□□□ -1.38
LINC02540-201ENST00000455554 VASH1Q7L8A9 365 aaPredicted RBP6.42□□□□□ -1.38
LINC02540-201ENST00000455554 SH3BP5LQ7L8J4 393 aa6.42□□□□□ -1.38
LINC02540-201ENST00000455554 TMEM151AQ8N4L1 468 aa6.42□□□□□ -1.38
LINC02540-201ENST00000455554 ZC3H15Q8WU90 426 aaKnown RBP6.42□□□□□ -1.38
LINC02540-201ENST00000455554 EMILIN1Q9Y6C2 1016 aa6.42□□□□□ -1.38
LINC02540-201ENST00000455554 TRMT44Q8IYL2 757 aaKnown RBP6.41□□□□□ -1.38
LINC02540-201ENST00000455554 CCDC116Q8IYX3 515 aa6.41□□□□□ -1.38
LINC02540-201ENST00000455554 MAGEB6P1A0A0J9YX57 407 aa6.4□□□□□ -1.38
LINC02540-201ENST00000455554 NUTM2BA6NNL0 878 aaPredicted RBP6.4□□□□□ -1.38
LINC02540-201ENST00000455554 TTLL8A6PVC2 850 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms