RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SMPD1P17405 629 aa8.85□□□□□ -0.99
USP40-209ENST00000452724 SMCPP49901 116 aaPredicted RBP8.85□□□□□ -0.99
USP40-209ENST00000452724 SH3BP2P78314 561 aa8.85□□□□□ -0.99
USP40-209ENST00000452724 POLR3EQ9NVU0 708 aa8.85□□□□□ -0.99
USP40-209ENST00000452724 J3QL48 77 aa8.84□□□□□ -0.99
USP40-209ENST00000452724 ALDH1A1P00352 501 aa8.84□□□□□ -0.99
USP40-209ENST00000452724 QPCTQ16769 361 aa8.84□□□□□ -0.99
USP40-209ENST00000452724 LINC01559Q495D7 138 aa8.84□□□□□ -0.99
USP40-209ENST00000452724 ZNF511Q8NB15 262 aa8.84□□□□□ -0.99
USP40-209ENST00000452724 BAP1Q92560 729 aa8.84□□□□□ -0.99
USP40-209ENST00000452724 ATP1B4Q9UN42 357 aaPredicted RBP8.84□□□□□ -0.99
USP40-209ENST00000452724 GPBP1L1Q9HC44 474 aaPredicted RBP8.83□□□□□ -1
USP40-209ENST00000452724 WASF2Q9Y6W5 498 aa8.83□□□□□ -1
USP40-209ENST00000452724 VARSP26640 1264 aaKnown RBP8.82□□□□□ -1
USP40-209ENST00000452724 PLEKHG3A1L390 1219 aa8.81□□□□□ -1
USP40-209ENST00000452724 F12P00748 615 aaPredicted RBP8.81□□□□□ -1
USP40-209ENST00000452724 SKIV2LQ15477 1246 aaKnown RBP8.81□□□□□ -1
USP40-209ENST00000452724 SH3D19Q5HYK7 790 aa8.81□□□□□ -1
USP40-209ENST00000452724 ARMC2Q8NEN0 867 aa8.81□□□□□ -1
USP40-209ENST00000452724 MAP10Q9P2G4 905 aa8.8□□□□□ -1
USP40-209ENST00000452724 SIAH2O43255 324 aa8.79□□□□□ -1
USP40-209ENST00000452724 FAM174AQ8TBP5 190 aa8.79□□□□□ -1
USP40-209ENST00000452724 FAM117AQ9C073 453 aa8.79□□□□□ -1
USP40-209ENST00000452724 PER1O15534 1290 aaPredicted RBP8.78□□□□□ -1
USP40-209ENST00000452724 AGERQ15109 404 aa8.78□□□□□ -1
USP40-209ENST00000452724 RTL5Q5HYW3 569 aaPredicted RBP8.78□□□□□ -1
USP40-209ENST00000452724 HPS1Q92902 700 aa8.78□□□□□ -1
USP40-209ENST00000452724 NBPF14Q5TI25 921 aa8.77□□□□□ -1.01
USP40-209ENST00000452724 MPNDQ8N594 471 aa8.77□□□□□ -1.01
USP40-209ENST00000452724 BPHLQ86WA6 291 aaPredicted RBP8.76□□□□□ -1.01
USP40-209ENST00000452724 POTECB2RU33 542 aa8.75□□□□□ -1.01
USP40-209ENST00000452724 SENP2Q9HC62 589 aa8.75□□□□□ -1.01
USP40-209ENST00000452724 ATP13A2Q9NQ11 1180 aa8.75□□□□□ -1.01
USP40-209ENST00000452724 DACH1Q9UI36 760 aa8.75□□□□□ -1.01
USP40-209ENST00000452724 C11orf95C9JLR9 678 aaPredicted RBP8.74□□□□□ -1.01
USP40-209ENST00000452724 GMPR2Q9P2T1 348 aaKnown RBP8.74□□□□□ -1.01
USP40-209ENST00000452724 TLL2Q9Y6L7 1015 aa8.74□□□□□ -1.01
USP40-209ENST00000452724 GPKOWQ92917 476 aaPredicted RBP eCLIP8.73□□□□□ -1.01
USP40-209ENST00000452724 FOXJ1Q92949 421 aa8.73□□□□□ -1.01
USP40-209ENST00000452724 ZNF775Q96BV0 537 aaPredicted RBP8.73□□□□□ -1.01
USP40-209ENST00000452724 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.73□□□□□ -1.01
USP40-209ENST00000452724 CAPN5O15484 640 aaPredicted RBP8.72□□□□□ -1.01
USP40-209ENST00000452724 PPP2R2DQ66LE6 453 aa8.72□□□□□ -1.01
USP40-209ENST00000452724 PROCA1Q8NCQ7 364 aaPredicted RBP8.72□□□□□ -1.01
USP40-209ENST00000452724 KIFC2Q96AC6 838 aa8.72□□□□□ -1.01
USP40-209ENST00000452724 CTDSPL2Q05D32 466 aa8.71□□□□□ -1.02
USP40-209ENST00000452724 ARID5BQ14865 1188 aa8.71□□□□□ -1.02
USP40-209ENST00000452724 ADH1CP00326 375 aa8.7□□□□□ -1.02
USP40-209ENST00000452724 NNTQ13423 1086 aa8.7□□□□□ -1.02
USP40-209ENST00000452724 PNMA1Q8ND90 353 aa8.7□□□□□ -1.02
USP40-209ENST00000452724 PCMTD1Q96MG8 357 aaPredicted RBP8.7□□□□□ -1.02
USP40-209ENST00000452724 GOPCQ9HD26 462 aa8.7□□□□□ -1.02
USP40-209ENST00000452724 AP1G2O75843 785 aa8.69□□□□□ -1.02
USP40-209ENST00000452724 IL27Q8NEV9 243 aa8.69□□□□□ -1.02
USP40-209ENST00000452724 CDK15Q96Q40 435 aa8.69□□□□□ -1.02
USP40-209ENST00000452724 NR5A1Q13285 461 aa8.68□□□□□ -1.02
USP40-209ENST00000452724 TRIM47Q96LD4 638 aa8.68□□□□□ -1.02
USP40-209ENST00000452724 ZC3H4Q9UPT8 1303 aaKnown RBP8.68□□□□□ -1.02
USP40-209ENST00000452724 MAGEB6P1A0A0J9YX57 407 aa8.67□□□□□ -1.02
USP40-209ENST00000452724 TMEM132AQ24JP5 1023 aa8.67□□□□□ -1.02
USP40-209ENST00000452724 SH3BP5LQ7L8J4 393 aa8.67□□□□□ -1.02
USP40-209ENST00000452724 FKBPLQ9UIM3 349 aa8.67□□□□□ -1.02
USP40-209ENST00000452724 WDR4P57081 412 aaKnown RBP8.66□□□□□ -1.02
USP40-209ENST00000452724 C4orf48Q5BLP8 95 aa8.66□□□□□ -1.02
USP40-209ENST00000452724 PDXDC2PQ6P474 469 aa8.66□□□□□ -1.02
USP40-209ENST00000452724 SH3RF1Q7Z6J0 888 aa8.66□□□□□ -1.02
USP40-209ENST00000452724 LRRN4Q8WUT4 740 aa8.66□□□□□ -1.02
USP40-209ENST00000452724 C1QTNF2Q9BXJ5 285 aa8.66□□□□□ -1.02
USP40-209ENST00000452724 MAP4K5Q9Y4K4 846 aa8.65□□□□□ -1.02
USP40-209ENST00000452724 SCARF1Q14162 830 aa8.64□□□□□ -1.03
USP40-209ENST00000452724 NR6A1Q15406 480 aa8.64□□□□□ -1.03
USP40-209ENST00000452724 VASH1Q7L8A9 365 aaPredicted RBP8.64□□□□□ -1.03
USP40-209ENST00000452724 TRMT44Q8IYL2 757 aaKnown RBP8.64□□□□□ -1.03
USP40-209ENST00000452724 ARHGAP9Q9BRR9 750 aa8.64□□□□□ -1.03
USP40-209ENST00000452724 CARD14Q9BXL6 1004 aa8.64□□□□□ -1.03
USP40-209ENST00000452724 USP17L8P0C7I0 530 aa8.63□□□□□ -1.03
USP40-209ENST00000452724 BMP1P13497 986 aa8.63□□□□□ -1.03
USP40-209ENST00000452724 RFC5P40937 340 aa8.63□□□□□ -1.03
USP40-209ENST00000452724 TMEM259Q4ZIN3 620 aa8.63□□□□□ -1.03
USP40-209ENST00000452724 CDV3Q9UKY7 258 aaKnown RBP8.63□□□□□ -1.03
USP40-209ENST00000452724 SNRPBP14678 240 aaKnown RBP8.62□□□□□ -1.03
USP40-209ENST00000452724 TIMP2P16035 220 aa8.62□□□□□ -1.03
USP40-209ENST00000452724 PTK2Q05397 1052 aa8.62□□□□□ -1.03
USP40-209ENST00000452724 FBXO31Q5XUX0 539 aaPredicted RBP8.62□□□□□ -1.03
USP40-209ENST00000452724 ZBTB33Q86T24 672 aa8.62□□□□□ -1.03
USP40-209ENST00000452724 GPSM3Q9Y4H4 160 aa8.62□□□□□ -1.03
USP40-209ENST00000452724 ZIC2O95409 532 aaPredicted RBP8.61□□□□□ -1.03
USP40-209ENST00000452724 FSHRP23945 695 aa8.61□□□□□ -1.03
USP40-209ENST00000452724 GRM5P41594 1212 aa8.61□□□□□ -1.03
USP40-209ENST00000452724 ERFEQ4G0M1 354 aa8.61□□□□□ -1.03
USP40-209ENST00000452724 TREML4Q6UXN2 200 aa8.61□□□□□ -1.03
USP40-209ENST00000452724 TRIM46Q7Z4K8 759 aa8.61□□□□□ -1.03
USP40-209ENST00000452724 SLC10A4Q96EP9 437 aa8.61□□□□□ -1.03
USP40-209ENST00000452724 UPP2O95045 317 aa8.6□□□□□ -1.03
USP40-209ENST00000452724 MRPL14Q6P1L8 145 aaKnown RBP8.6□□□□□ -1.03
USP40-209ENST00000452724 KLF16Q9BXK1 252 aaPredicted RBP8.59□□□□□ -1.03
USP40-209ENST00000452724 EMILIN1Q9Y6C2 1016 aa8.59□□□□□ -1.03
USP40-209ENST00000452724 WFS1O76024 890 aa8.58□□□□□ -1.04
USP40-209ENST00000452724 NR3C2P08235 984 aa8.58□□□□□ -1.04
USP40-209ENST00000452724 CCDC116Q8IYX3 515 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms