RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 SRPK2P78362 688 aaKnown RBP28.19■■■□□ 2.1
COL9A3-202ENST00000452372 CCDC61Q9Y6R9 512 aa28.19■■■□□ 2.1
COL9A3-202ENST00000452372 SBNO2Q9Y2G9 1366 aa28.19■■■□□ 2.1
COL9A3-202ENST00000452372 ITSN1Q15811 1721 aa28.18■■■□□ 2.1
COL9A3-202ENST00000452372 FAM83GA6ND36 823 aa28.18■■■□□ 2.1
COL9A3-202ENST00000452372 ATAD2Q6PL18 1390 aa28.18■■■□□ 2.1
COL9A3-202ENST00000452372 GLI3P10071 1580 aa28.18■■■□□ 2.1
COL9A3-202ENST00000452372 ABCA3Q99758 1704 aa28.18■■■□□ 2.1
COL9A3-202ENST00000452372 CABP2Q9NPB3 220 aa28.17■■■□□ 2.1
COL9A3-202ENST00000452372 ALS2Q96Q42 1657 aa28.15■■■□□ 2.1
COL9A3-202ENST00000452372 HAP1P54257 671 aaPredicted RBP28.14■■■□□ 2.1
COL9A3-202ENST00000452372 ST20-MTHFSA0A0A6YYL1 179 aa28.13■■■□□ 2.09
COL9A3-202ENST00000452372 PLEKHG3A1L390 1219 aa28.13■■■□□ 2.09
COL9A3-202ENST00000452372 NGDNQ8NEJ9 315 aaKnown RBP28.13■■■□□ 2.09
COL9A3-202ENST00000452372 TOPAZ1Q8N9V7 1692 aa28.13■■■□□ 2.09
COL9A3-202ENST00000452372 VPS72Q15906 364 aa28.12■■■□□ 2.09
COL9A3-202ENST00000452372 PLCH1Q4KWH8 1693 aa28.11■■■□□ 2.09
COL9A3-202ENST00000452372 NWD2Q9ULI1 1742 aa28.11■■■□□ 2.09
COL9A3-202ENST00000452372 USP47Q96K76 1375 aa28.11■■■□□ 2.09
COL9A3-202ENST00000452372 ONECUT3O60422 494 aaPredicted RBP28.09■■■□□ 2.09
COL9A3-202ENST00000452372 TESK2Q96S53 571 aa28.09■■■□□ 2.09
COL9A3-202ENST00000452372 SLC24A1O60721 1099 aa28.08■■■□□ 2.09
COL9A3-202ENST00000452372 BRWD3Q6RI45 1802 aa28.08■■■□□ 2.09
COL9A3-202ENST00000452372 POLR3AO14802 1390 aaPredicted RBP28.08■■■□□ 2.09
COL9A3-202ENST00000452372 PPIP5K1Q6PFW1 1433 aa28.08■■■□□ 2.09
COL9A3-202ENST00000452372 ACEP12821 1306 aa28.07■■■□□ 2.08
COL9A3-202ENST00000452372 CABP1Q9NZU7 370 aa28.05■■■□□ 2.08
COL9A3-202ENST00000452372 CRYBG1Q9Y4K1 1723 aa28.04■■■□□ 2.08
COL9A3-202ENST00000452372 PAK3O75914 559 aaPredicted RBP28.04■■■□□ 2.08
COL9A3-202ENST00000452372 SEPT12Q8IYM1 358 aa28.04■■■□□ 2.08
COL9A3-202ENST00000452372 PUS7Q96PZ0 661 aaKnown RBP28.03■■■□□ 2.08
COL9A3-202ENST00000452372 CCDC125Q86Z20 511 aa28.02■■■□□ 2.08
COL9A3-202ENST00000452372 BTG4Q9NY30 223 aa28.02■■■□□ 2.08
COL9A3-202ENST00000452372 NRAPQ86VF7 1730 aa28.01■■■□□ 2.07
COL9A3-202ENST00000452372 CCDC9Q9Y3X0 531 aaKnown RBP27.99■■■□□ 2.07
COL9A3-202ENST00000452372 COL14A1Q05707 1796 aaKnown RBP27.99■■■□□ 2.07
COL9A3-202ENST00000452372 TMF1P82094 1093 aa27.96■■■□□ 2.07
COL9A3-202ENST00000452372 SRCAPQ6ZRS2 3230 aa27.95■■■□□ 2.07
COL9A3-202ENST00000452372 EIF4G2P78344 907 aaKnown RBP eCLIP27.95■■■□□ 2.06
COL9A3-202ENST00000452372 ZNF692Q9BU19 519 aaPredicted RBP27.94■■■□□ 2.06
COL9A3-202ENST00000452372 BRD4O60885 1362 aaPredicted RBP27.94■■■□□ 2.06
COL9A3-202ENST00000452372 NUTM2GQ5VZR2 741 aa27.93■■■□□ 2.06
COL9A3-202ENST00000452372 FAM98CQ17RN3 349 aaKnown RBP27.92■■■□□ 2.06
COL9A3-202ENST00000452372 KRT27Q7Z3Y8 459 aa27.92■■■□□ 2.06
COL9A3-202ENST00000452372 PRDM11Q9NQV5 511 aa27.92■■■□□ 2.06
COL9A3-202ENST00000452372 SPATA31A5Q5VU36 1347 aa27.92■■■□□ 2.06
COL9A3-202ENST00000452372 SPATA31A7Q8IWB4 1347 aa27.92■■■□□ 2.06
COL9A3-202ENST00000452372 KIAA0232Q92628 1395 aa27.91■■■□□ 2.06
COL9A3-202ENST00000452372 USP6P35125 1406 aa27.91■■■□□ 2.06
COL9A3-202ENST00000452372 BLMP54132 1417 aaPredicted RBP27.91■■■□□ 2.06
COL9A3-202ENST00000452372 TMC1Q8TDI8 760 aa27.9■■■□□ 2.06
COL9A3-202ENST00000452372 CPSF1Q10570 1443 aaKnown RBP27.9■■■□□ 2.06
COL9A3-202ENST00000452372 CHRNA2Q15822 529 aa27.89■■■□□ 2.06
COL9A3-202ENST00000452372 SLC12A5Q9H2X9 1139 aa27.89■■■□□ 2.06
COL9A3-202ENST00000452372 PHRF1Q9P1Y6 1649 aaKnown RBP27.89■■■□□ 2.05
COL9A3-202ENST00000452372 AKAP12Q02952 1782 aa27.88■■■□□ 2.05
COL9A3-202ENST00000452372 HSPA5P11021 654 aaKnown RBP27.88■■■□□ 2.05
COL9A3-202ENST00000452372 ZC3H6P61129 1189 aaKnown RBP27.88■■■□□ 2.05
COL9A3-202ENST00000452372 CDCA8Q53HL2 280 aa27.88■■■□□ 2.05
COL9A3-202ENST00000452372 DEFB132Q7Z7B7 95 aa27.87■■■□□ 2.05
COL9A3-202ENST00000452372 SSH2Q76I76 1423 aa27.86■■■□□ 2.05
COL9A3-202ENST00000452372 ABTB2Q8N961 1025 aa27.86■■■□□ 2.05
COL9A3-202ENST00000452372 NINLQ9Y2I6 1382 aa27.86■■■□□ 2.05
COL9A3-202ENST00000452372 KTN1Q86UP2 1357 aaKnown RBP27.85■■■□□ 2.05
COL9A3-202ENST00000452372 CD163L1Q9NR16 1453 aa27.84■■■□□ 2.05
COL9A3-202ENST00000452372 ZRANB1Q9UGI0 708 aa27.84■■■□□ 2.05
COL9A3-202ENST00000452372 TERF2IPQ9NYB0 399 aa27.83■■■□□ 2.05
COL9A3-202ENST00000452372 USP19O94966 1318 aa27.83■■■□□ 2.05
COL9A3-202ENST00000452372 HDGFL2Q7Z4V5 671 aaPredicted RBP27.82■■■□□ 2.04
COL9A3-202ENST00000452372 SPATA31A1Q5TZJ5 1347 aa27.82■■■□□ 2.04
COL9A3-202ENST00000452372 TTC21BQ7Z4L5 1316 aa27.81■■■□□ 2.04
COL9A3-202ENST00000452372 A0A0G2JS52 829 aa27.8■■■□□ 2.04
COL9A3-202ENST00000452372 MYT1Q01538 1121 aa27.8■■■□□ 2.04
COL9A3-202ENST00000452372 NLRP13Q86W25 1043 aa27.8■■■□□ 2.04
COL9A3-202ENST00000452372 THSD7AQ9UPZ6 1657 aa27.8■■■□□ 2.04
COL9A3-202ENST00000452372 MON2Q7Z3U7 1717 aa27.8■■■□□ 2.04
COL9A3-202ENST00000452372 TTC21AQ8NDW8 1320 aa27.79■■■□□ 2.04
COL9A3-202ENST00000452372 FAM182BQ5T319 152 aa27.79■■■□□ 2.04
COL9A3-202ENST00000452372 STRN4Q9NRL3 753 aa27.79■■■□□ 2.04
COL9A3-202ENST00000452372 CAMTA1Q9Y6Y1 1673 aa27.78■■■□□ 2.04
COL9A3-202ENST00000452372 NRKQ7Z2Y5 1582 aa27.78■■■□□ 2.04
COL9A3-202ENST00000452372 CPDO75976 1380 aa27.78■■■□□ 2.04
COL9A3-202ENST00000452372 GCP02774 474 aa27.78■■■□□ 2.04
COL9A3-202ENST00000452372 A0A1W2PP64 1363 aa27.77■■■□□ 2.04
COL9A3-202ENST00000452372 NLRP6P59044 892 aa27.76■■■□□ 2.03
COL9A3-202ENST00000452372 SF3B2Q13435 895 aaKnown RBP27.75■■■□□ 2.03
COL9A3-202ENST00000452372 PIK3C2AO00443 1686 aa27.74■■■□□ 2.03
COL9A3-202ENST00000452372 LMO7Q8WWI1 1683 aa27.74■■■□□ 2.03
COL9A3-202ENST00000452372 EDC4Q6P2E9 1401 aaKnown RBP27.73■■■□□ 2.03
COL9A3-202ENST00000452372 ANKRD36BQ8N2N9 1353 aa27.73■■■□□ 2.03
COL9A3-202ENST00000452372 EVA1CP58658 441 aa27.72■■■□□ 2.03
COL9A3-202ENST00000452372 LARP1Q6PKG0 1096 aaKnown RBP27.72■■■□□ 2.03
COL9A3-202ENST00000452372 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.72■■■□□ 2.03
COL9A3-202ENST00000452372 BARGINQ6ZT62 677 aa27.7■■■□□ 2.02
COL9A3-202ENST00000452372 USP35Q9P2H5 1018 aa27.69■■■□□ 2.02
COL9A3-202ENST00000452372 MYOM1P52179 1685 aa27.68■■■□□ 2.02
COL9A3-202ENST00000452372 C11orf95C9JLR9 678 aaPredicted RBP27.67■■■□□ 2.02
COL9A3-202ENST00000452372 USP31Q70CQ4 1352 aa27.67■■■□□ 2.02
COL9A3-202ENST00000452372 SLIT3O75094 1523 aa27.67■■■□□ 2.02
COL9A3-202ENST00000452372 NME9Q86XW9 330 aa27.66■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms