RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 EIF4G2P78344 907 aaKnown RBP eCLIP20.16■□□□□ 0.82
COL3A1-203ENST00000450867 TMF1P82094 1093 aa20.16■□□□□ 0.82
COL3A1-203ENST00000450867 PIK3C2AO00443 1686 aa20.16■□□□□ 0.82
COL3A1-203ENST00000450867 ZNF692Q9BU19 519 aaPredicted RBP20.15■□□□□ 0.82
COL3A1-203ENST00000450867 HSPA5P11021 654 aaKnown RBP20.13■□□□□ 0.81
COL3A1-203ENST00000450867 CDCA8Q53HL2 280 aa20.13■□□□□ 0.81
COL3A1-203ENST00000450867 NUTM2BA6NNL0 878 aaPredicted RBP20.12■□□□□ 0.81
COL3A1-203ENST00000450867 NUTM2EB1AL46 878 aaPredicted RBP20.12■□□□□ 0.81
COL3A1-203ENST00000450867 NUTM2AQ8IVF1 878 aaPredicted RBP20.12■□□□□ 0.81
COL3A1-203ENST00000450867 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.12■□□□□ 0.81
COL3A1-203ENST00000450867 RGS17Q9UGC6 210 aaPredicted RBP20.11■□□□□ 0.81
COL3A1-203ENST00000450867 NWD2Q9ULI1 1742 aa20.1■□□□□ 0.81
COL3A1-203ENST00000450867 PLCH1Q4KWH8 1693 aa20.1■□□□□ 0.81
COL3A1-203ENST00000450867 KTN1Q86UP2 1357 aaKnown RBP20.09■□□□□ 0.81
COL3A1-203ENST00000450867 USP19O94966 1318 aa20.09■□□□□ 0.81
COL3A1-203ENST00000450867 PAK3O75914 559 aaPredicted RBP20.09■□□□□ 0.81
COL3A1-203ENST00000450867 SLC12A5Q9H2X9 1139 aa20.09■□□□□ 0.81
COL3A1-203ENST00000450867 EDC4Q6P2E9 1401 aaKnown RBP20.09■□□□□ 0.81
COL3A1-203ENST00000450867 A0A1W2PP64 1363 aa20.08■□□□□ 0.81
COL3A1-203ENST00000450867 TTC21AQ8NDW8 1320 aa20.08■□□□□ 0.81
COL3A1-203ENST00000450867 SLIT3O75094 1523 aa20.08■□□□□ 0.81
COL3A1-203ENST00000450867 MEX3CQ5U5Q3 659 aaKnown RBP20.08■□□□□ 0.81
COL3A1-203ENST00000450867 PHF23Q9BUL5 403 aaPredicted RBP20.08■□□□□ 0.81
COL3A1-203ENST00000450867 TTC21BQ7Z4L5 1316 aa20.07■□□□□ 0.8
COL3A1-203ENST00000450867 LMOD2Q6P5Q4 547 aa20.07■□□□□ 0.8
COL3A1-203ENST00000450867 TERF2IPQ9NYB0 399 aa20.07■□□□□ 0.8
COL3A1-203ENST00000450867 COL14A1Q05707 1796 aaKnown RBP20.07■□□□□ 0.8
COL3A1-203ENST00000450867 ANKRD36BQ8N2N9 1353 aa20.07■□□□□ 0.8
COL3A1-203ENST00000450867 SLIT2O94813 1529 aa20.06■□□□□ 0.8
COL3A1-203ENST00000450867 ADAMTS2O95450 1211 aa20.05■□□□□ 0.8
COL3A1-203ENST00000450867 HDGFL2Q7Z4V5 671 aaPredicted RBP20.05■□□□□ 0.8
COL3A1-203ENST00000450867 FNBP4Q8N3X1 1017 aaPredicted RBP20.05■□□□□ 0.8
COL3A1-203ENST00000450867 ABTB2Q8N961 1025 aa20.05■□□□□ 0.8
COL3A1-203ENST00000450867 TMC1Q8TDI8 760 aa20.05■□□□□ 0.8
COL3A1-203ENST00000450867 CABLES1Q8TDN4 633 aa20.05■□□□□ 0.8
COL3A1-203ENST00000450867 NRAPQ86VF7 1730 aa20.04■□□□□ 0.8
COL3A1-203ENST00000450867 AFF2P51816 1311 aa20.03■□□□□ 0.8
COL3A1-203ENST00000450867 ZNF772Q68DY9 489 aaPredicted RBP20.03■□□□□ 0.8
COL3A1-203ENST00000450867 NLRP13Q86W25 1043 aa20.03■□□□□ 0.8
COL3A1-203ENST00000450867 C8orf37Q96NL8 207 aa20.03■□□□□ 0.8
COL3A1-203ENST00000450867 USP31Q70CQ4 1352 aa20.03■□□□□ 0.8
COL3A1-203ENST00000450867 BCL9LQ86UU0 1499 aa20.02■□□□□ 0.8
COL3A1-203ENST00000450867 KIF20BQ96Q89 1820 aa20.02■□□□□ 0.79
COL3A1-203ENST00000450867 LMO7Q8WWI1 1683 aa20.01■□□□□ 0.79
COL3A1-203ENST00000450867 CPDO75976 1380 aa20.01■□□□□ 0.79
COL3A1-203ENST00000450867 NGLY1Q96IV0 654 aa20.01■□□□□ 0.79
COL3A1-203ENST00000450867 NFAT5O94916 1531 aa19.99■□□□□ 0.79
COL3A1-203ENST00000450867 HAP1P54257 671 aaPredicted RBP19.99■□□□□ 0.79
COL3A1-203ENST00000450867 POTEAQ6S8J7 498 aa19.99■□□□□ 0.79
COL3A1-203ENST00000450867 OVOS2A0A0J9YW53 1432 aa19.99■□□□□ 0.79
COL3A1-203ENST00000450867 OVOS2Q6IE36 1432 aa19.99■□□□□ 0.79
COL3A1-203ENST00000450867 NLRP6P59044 892 aa19.98■□□□□ 0.79
COL3A1-203ENST00000450867 NUTM2GQ5VZR2 741 aa19.98■□□□□ 0.79
COL3A1-203ENST00000450867 ATRNO75882 1429 aa19.98■□□□□ 0.79
COL3A1-203ENST00000450867 COL18A1P39060 1754 aa19.98■□□□□ 0.79
COL3A1-203ENST00000450867 C11orf95C9JLR9 678 aaPredicted RBP19.97■□□□□ 0.79
COL3A1-203ENST00000450867 GCP02774 474 aa19.96■□□□□ 0.79
COL3A1-203ENST00000450867 ABCC6O95255 1503 aa19.96■□□□□ 0.79
COL3A1-203ENST00000450867 KIAA0232Q92628 1395 aa19.95■□□□□ 0.79
COL3A1-203ENST00000450867 CDK12Q9NYV4 1490 aaPredicted RBP19.95■□□□□ 0.78
COL3A1-203ENST00000450867 FAM83GA6ND36 823 aa19.95■□□□□ 0.78
COL3A1-203ENST00000450867 USP21Q9UK80 565 aa19.95■□□□□ 0.78
COL3A1-203ENST00000450867 LTN1O94822 1766 aa19.95■□□□□ 0.78
COL3A1-203ENST00000450867 ANKRD26Q9UPS8 1709 aa19.94■□□□□ 0.78
COL3A1-203ENST00000450867 ILDR2Q71H61 639 aa19.94■□□□□ 0.78
COL3A1-203ENST00000450867 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.94■□□□□ 0.78
COL3A1-203ENST00000450867 NME9Q86XW9 330 aa19.93■□□□□ 0.78
COL3A1-203ENST00000450867 KIF7Q2M1P5 1343 aa19.93■□□□□ 0.78
COL3A1-203ENST00000450867 PLEKHG5O94827 1062 aa19.92■□□□□ 0.78
COL3A1-203ENST00000450867 UNC5CLQ8IV45 518 aa19.92■□□□□ 0.78
COL3A1-203ENST00000450867 KCNH5Q8NCM2 988 aa19.92■□□□□ 0.78
COL3A1-203ENST00000450867 PRDM11Q9NQV5 511 aa19.92■□□□□ 0.78
COL3A1-203ENST00000450867 GLI3P10071 1580 aa19.91■□□□□ 0.78
COL3A1-203ENST00000450867 CAMTA1Q9Y6Y1 1673 aa19.91■□□□□ 0.78
COL3A1-203ENST00000450867 RGPD5Q99666 1765 aa19.91■□□□□ 0.78
COL3A1-203ENST00000450867 CARD14Q9BXL6 1004 aa19.91■□□□□ 0.78
COL3A1-203ENST00000450867 QTRT2Q9H974 415 aaKnown RBP19.91■□□□□ 0.78
COL3A1-203ENST00000450867 TRPC5Q9UL62 973 aaPredicted RBP19.91■□□□□ 0.78
COL3A1-203ENST00000450867 NSD3Q9BZ95 1437 aa19.91■□□□□ 0.78
COL3A1-203ENST00000450867 ZRANB1Q9UGI0 708 aa19.9■□□□□ 0.78
COL3A1-203ENST00000450867 AATKQ6ZMQ8 1374 aa19.9■□□□□ 0.78
COL3A1-203ENST00000450867 ZC3H6P61129 1189 aaKnown RBP19.89■□□□□ 0.77
COL3A1-203ENST00000450867 CCDC7Q96M83 1385 aa19.88■□□□□ 0.77
COL3A1-203ENST00000450867 FYB1O15117 783 aa19.88■□□□□ 0.77
COL3A1-203ENST00000450867 RBM6P78332 1123 aaKnown RBP19.88■□□□□ 0.77
COL3A1-203ENST00000450867 VPS72Q15906 364 aa19.88■□□□□ 0.77
COL3A1-203ENST00000450867 ARHGEF25Q86VW2 580 aa19.88■□□□□ 0.77
COL3A1-203ENST00000450867 ZEB1P37275 1124 aaPredicted RBP19.87■□□□□ 0.77
COL3A1-203ENST00000450867 BTG4Q9NY30 223 aa19.87■□□□□ 0.77
COL3A1-203ENST00000450867 RXRBP28702 533 aa19.86■□□□□ 0.77
COL3A1-203ENST00000450867 COL5A2P05997 1499 aaPredicted RBP19.86■□□□□ 0.77
COL3A1-203ENST00000450867 WASHC2AQ641Q2 1341 aa19.85■□□□□ 0.77
COL3A1-203ENST00000450867 CHRNA2Q15822 529 aa19.85■□□□□ 0.77
COL3A1-203ENST00000450867 COG3Q96JB2 828 aa19.84■□□□□ 0.77
COL3A1-203ENST00000450867 GJD4Q96KN9 370 aaPredicted RBP19.84■□□□□ 0.77
COL3A1-203ENST00000450867 POLR3GLQ9BT43 218 aa19.84■□□□□ 0.77
COL3A1-203ENST00000450867 RGS12O14924 1447 aa19.84■□□□□ 0.77
COL3A1-203ENST00000450867 PANK3Q9H999 370 aa19.83■□□□□ 0.77
COL3A1-203ENST00000450867 CGNL1Q0VF96 1302 aa19.82■□□□□ 0.76
COL3A1-203ENST00000450867 THSD7AQ9UPZ6 1657 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms